Lag0017450 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017450
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCysteine/Histidine-rich C1 domain family protein
Locationchr5: 3860624 .. 3861136 (+)
RNA-Seq ExpressionLag0017450
SyntenyLag0017450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCCAACAAATCAATCCAACACAAGCATAATTTCAAACAGCAGAGATCAAAAGTCGAAGAAGCACTCACCGAAACTCACTCAGGCATTTCGTCGAACGTCTTCTCGGCACGCACCAGCGCCGAATCGAAACATGAATCGATCTCACCGATTCCGCCTCAGATCAACAACAACAAACATCAAGAGGATTACGAACCTCAAATTCTCTGCTGCGGATGCGATCGGCCGATGATGTTGATCGGAGTGGAGAACTCGACTCTGTGCTACATTTGCAAGGCGACGCCATCGACGTACGTGTGTGCGCCATGTTCGAGCGGATTGATTAACTTTTTCGACAGAGGATGTGCGGAAATGCCGAGAGAGATCGATTATCCGTATCACCACCACGCTCTGAGGCTGAGATATCGAAGAAGTTCTTACTGCTCCGCCTGTCTCCGGCGATCCGACGGCTTCAATTTTGGTTGCGAGAAATGTAAGTTCATTGTCGATGTTAAATGTGCTCTCAGATAA

mRNA sequence

ATGGACTCCAACAAATCAATCCAACACAAGCATAATTTCAAACAGCAGAGATCAAAAGTCGAAGAAGCACTCACCGAAACTCACTCAGGCATTTCGTCGAACGTCTTCTCGGCACGCACCAGCGCCGAATCGAAACATGAATCGATCTCACCGATTCCGCCTCAGATCAACAACAACAAACATCAAGAGGATTACGAACCTCAAATTCTCTGCTGCGGATGCGATCGGCCGATGATGTTGATCGGAGTGGAGAACTCGACTCTGTGCTACATTTGCAAGGCGACGCCATCGACGTACGTGTGTGCGCCATGTTCGAGCGGATTGATTAACTTTTTCGACAGAGGATGTGCGGAAATGCCGAGAGAGATCGATTATCCGTATCACCACCACGCTCTGAGGCTGAGATATCGAAGAAGTTCTTACTGCTCCGCCTGTCTCCGGCGATCCGACGGCTTCAATTTTGGTTGCGAGAAATGTAAGTTCATTGTCGATGTTAAATGTGCTCTCAGATAA

Coding sequence (CDS)

ATGGACTCCAACAAATCAATCCAACACAAGCATAATTTCAAACAGCAGAGATCAAAAGTCGAAGAAGCACTCACCGAAACTCACTCAGGCATTTCGTCGAACGTCTTCTCGGCACGCACCAGCGCCGAATCGAAACATGAATCGATCTCACCGATTCCGCCTCAGATCAACAACAACAAACATCAAGAGGATTACGAACCTCAAATTCTCTGCTGCGGATGCGATCGGCCGATGATGTTGATCGGAGTGGAGAACTCGACTCTGTGCTACATTTGCAAGGCGACGCCATCGACGTACGTGTGTGCGCCATGTTCGAGCGGATTGATTAACTTTTTCGACAGAGGATGTGCGGAAATGCCGAGAGAGATCGATTATCCGTATCACCACCACGCTCTGAGGCTGAGATATCGAAGAAGTTCTTACTGCTCCGCCTGTCTCCGGCGATCCGACGGCTTCAATTTTGGTTGCGAGAAATGTAAGTTCATTGTCGATGTTAAATGTGCTCTCAGATAA

Protein sequence

MDSNKSIQHKHNFKQQRSKVEEALTETHSGISSNVFSARTSAESKHESISPIPPQINNNKHQEDYEPQILCCGCDRPMMLIGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAEMPREIDYPYHHHALRLRYRRSSYCSACLRRSDGFNFGCEKCKFIVDVKCALR
Homology
BLAST of Lag0017450 vs. NCBI nr
Match: KAG6579395.1 (hypothetical protein SDJN03_23843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-30
Identity = 72/169 (42.60%), Postives = 95/169 (56.21%), Query Frame = 0

Query: 11  HNFKQQRSKVEEALTE------THSGISSNVFSARTSAE---SKHESISPIPPQINNNKH 70
           H F    S++E   TE       HS + +    A    E   S   S S       +N  
Sbjct: 5   HPFLLPPSRIEHGHTEFENFHPIHSLVRTRPSIADLEDETPPSNQSSSSNTHNSTKSNNQ 64

Query: 71  QEDYEPQILCCGCDRPMMLIGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAEMPR 130
           QE  E  + CC C +P+  IGVE++TLCY+C    STY C PCS+G INFFDR C+E+P+
Sbjct: 65  QERNEEGVSCCACHKPLTPIGVESTTLCYVCNKLHSTYFCGPCSNGWINFFDRRCSELPK 124

Query: 131 EIDYPYHHHALRLRYRRSSYCSACLRRSDGFNFGCEKCKFIVDVKCALR 171
           EI YPYH H L +  R++S C  C +R   FN+GC+ C FIVD+KC L+
Sbjct: 125 EIHYPYHRHRLTMSIRKNSNCWVCGKRCGAFNYGCDGCSFIVDIKCVLK 173

BLAST of Lag0017450 vs. NCBI nr
Match: XP_028056396.1 (uncharacterized protein LOC114260456 [Camellia sinensis] >THG20191.1 hypothetical protein TEA_005576 [Camellia sinensis var. sinensis])

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-09
Identity = 48/127 (37.80%), Postives = 63/127 (49.61%), Query Frame = 0

Query: 54  PQINNNKHQEDYEPQILCCGCDRPMMLIGVENSTLCYICKATPST------YVCAPCSSG 113
           PQ+ N+ H     P ILC            ++  L Y C     T      YVC  C  G
Sbjct: 142 PQLPNHPH-----PLILC-----------YKDKNLTYKCTCCSLTIDGDCLYVCLQC-KG 201

Query: 114 LINFFDRGCAEMPREIDYPYH-HHALRLR-----YRRSSYCSACLRRSDGFNFGCEKCKF 169
           L++     CAEMP +I++P+H  H+L L+     Y R   CS C +R DGF + C KCKF
Sbjct: 202 LLH---HSCAEMPWKIEHPFHSSHSLFLQSRSGFYDREFICSLCCQRRDGFAYHCHKCKF 248

BLAST of Lag0017450 vs. NCBI nr
Match: XP_035551576.1 (uncharacterized protein LOC109008056 [Juglans regia] >KAF5454028.1 hypothetical protein F2P56_023726 [Juglans regia])

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-08
Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 0

Query: 81  IGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAEMPREIDYPYHHHALRLRYRRS- 140
           +G+       +    P  Y C  C      F  + C E+PR+I +P H H L LR + + 
Sbjct: 348 VGINKKCNACMRSIFPPFYNCTQCGF----FLHKACVELPRKIRHPLHQHPLILRSKATF 407

Query: 141 -SYCSACLRRSDGFNFGCEKCKFIVDVKCAL 170
            S C  C R   GF + CEKCKF +DV+C+L
Sbjct: 408 CSVCKTCCRLCSGFTYNCEKCKFNIDVQCSL 434

BLAST of Lag0017450 vs. NCBI nr
Match: XP_028056383.1 (uncharacterized protein LOC114260454 isoform X1 [Camellia sinensis] >XP_028056384.1 uncharacterized protein LOC114260454 isoform X1 [Camellia sinensis] >XP_028056386.1 uncharacterized protein LOC114260454 isoform X2 [Camellia sinensis] >XP_028056387.1 uncharacterized protein LOC114260454 isoform X1 [Camellia sinensis] >XP_028056388.1 uncharacterized protein LOC114260454 isoform X1 [Camellia sinensis] >XP_028056389.1 uncharacterized protein LOC114260454 isoform X3 [Camellia sinensis] >XP_028056390.1 uncharacterized protein LOC114260454 isoform X1 [Camellia sinensis] >XP_028056391.1 uncharacterized protein LOC114260454 isoform X1 [Camellia sinensis] >XP_028056392.1 uncharacterized protein LOC114260454 isoform X1 [Camellia sinensis] >XP_028056393.1 uncharacterized protein LOC114260454 isoform X1 [Camellia sinensis])

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-08
Identity = 42/120 (35.00%), Postives = 56/120 (46.67%), Query Frame = 0

Query: 55  QINNNKHQEDYEPQILCCGCDRPMMLIGVENSTLCYICKATPSTYVCAPCSSGLINFFDR 114
           Q  +   Q ++    + C  D+ +    +   T C +       YVC  C   L N    
Sbjct: 141 QFQHQNDQPNHPHPFILCHKDQNL----IYKCTCCDLVINEDCVYVCLQCKGLLHN---- 200

Query: 115 GCAEMPREIDYPYH-HHALRLRYRRSSY-----CSACLRRSDGFNFGCEKCKFIVDVKCA 169
            C E+P EI +P+H  H L LR R  SY     CS C +R  GF + C KCKF+VDV CA
Sbjct: 201 SCLELPWEIKHPFHSSHPLVLRSRPGSYDREFICSVCCQRRHGFAYHCFKCKFVVDVHCA 252

BLAST of Lag0017450 vs. NCBI nr
Match: THG20173.1 (hypothetical protein TEA_005558 [Camellia sinensis var. sinensis])

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-08
Identity = 42/120 (35.00%), Postives = 56/120 (46.67%), Query Frame = 0

Query: 55  QINNNKHQEDYEPQILCCGCDRPMMLIGVENSTLCYICKATPSTYVCAPCSSGLINFFDR 114
           Q  +   Q ++    + C  D+ +    +   T C +       YVC  C   L N    
Sbjct: 141 QFQHQNDQPNHPHPFILCHKDQNL----IYKCTCCDLVINEDCVYVCLQCKGLLHN---- 200

Query: 115 GCAEMPREIDYPYH-HHALRLRYRRSSY-----CSACLRRSDGFNFGCEKCKFIVDVKCA 169
            C E+P EI +P+H  H L LR R  SY     CS C +R  GF + C KCKF+VDV CA
Sbjct: 201 SCLELPWEIKHPFHSSHPLVLRSRPGSYDREFICSVCCQRRHGFAYHCFKCKFVVDVHCA 252

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6579395.12.5e-3042.60hypothetical protein SDJN03_23843, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_028056396.14.2e-0937.80uncharacterized protein LOC114260456 [Camellia sinensis] >THG20191.1 hypothetica... [more]
XP_035551576.13.6e-0836.26uncharacterized protein LOC109008056 [Juglans regia] >KAF5454028.1 hypothetical ... [more]
XP_028056383.16.1e-0835.00uncharacterized protein LOC114260454 isoform X1 [Camellia sinensis] >XP_02805638... [more]
THG20173.16.1e-0835.00hypothetical protein TEA_005558 [Camellia sinensis var. sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004146DC1PFAMPF03107C1_2coord: 126..168
e-value: 3.2E-9
score: 36.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableSUPERFAMILY57889Cysteine-rich domaincoord: 97..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017450.1Lag0017450.1mRNA