Lag0016692 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016692
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF4218 domain-containing protein
Location	chr12: 40320845 .. 40321798 (-)
RNA-Seq Expression	Lag0016692
Synteny	Lag0016692

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAATGGAAGTAGAAGATGATGATTTGTTGTTTGCTGAGCTTACGAGACGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGATTGTTCACACGGTTCGTTTCGCTTTTCTCGATCTTTAGCCATTCACTTTTTTTTTTTTTTATTAGGCTTTGAACTTTTAAACTTAGTGTTTGTTTAATGTTTGATAGGTCTATGTTGTTAATATTGTTTATTTGTGCTACTAAACACTTTTCGAAGTCAAATGTGATCTGTTGGAGTTTAAAAATAGCGACTAATGAAACGTGACATTAAAAGTTTAAAGAGATGTTAGAAATTTTTTGAAGTATTTCTTCTTTTTTTTTTCAAAATACAAGTTTGAGTGTGTAGTGAGCTACTCTTCAATTCCATCGGTTTCTCTAATCAAACTAAAATCTGACAATTCCTTTCTTAAACATTCATTAAATTGAGAAGTTAAACTCACAACTTAAAGTTCCGACCTTTAAAAACGTTCCGACCTTTAAAAACTTTAGGAGGTGTTTGGTCTAAGGAGTTGTGTTGTGGGACCCACAAACTTATTAACTAATTACAATACTCTATCGTGAGTCTCACAAACTTATTAACTACTACTCAACTCCTACGACAAAACAATTTTAGATTTCATAATTTCAACTCCTTGGACCAAACTGAGATCAAACTTGTAACTAAACATATCATTAATGTTTCAGGATTTGACTCGGACGATACACCGAGTTCGACCTAGACAGCTGCCTTTAATGGTGGATTACGAGCAAAACTTTGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCGGCACGGTTGCCGCCGCCGAGGAGGAAGCAGAGGAATGCCGCCGCCGCCGCCGCCTATAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCATCTTCAACCTATTATTTTAAGCCTAGAAAGGGCTAA

mRNA sequence

ATGCAAATGGAAGTAGAAGATGATGATTTGTTGTTTGCTGAGCTTACGAGACGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGATTGTTCACACGGATTTGACTCGGACGATACACCGAGTTCGACCTAGACAGCTGCCTTTAATGGTGGATTACGAGCAAAACTTTGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCGGCACGGTTGCCGCCGCCGAGGAGGAAGCAGAGGAATGCCGCCGCCGCCGCCGCCTATAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCATCTTCAACCTATTATTTTAAGCCTAGAAAGGGCTAA

Coding sequence (CDS)

ATGCAAATGGAAGTAGAAGATGATGATTTGTTGTTTGCTGAGCTTACGAGACGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGATTGTTCACACGGATTTGACTCGGACGATACACCGAGTTCGACCTAGACAGCTGCCTTTAATGGTGGATTACGAGCAAAACTTTGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCGGCACGGTTGCCGCCGCCGAGGAGGAAGCAGAGGAATGCCGCCGCCGCCGCCGCCTATAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCATCTTCAACCTATTATTTTAAGCCTAGAAAGGGCTAA

Protein sequence

MQMEVEDDDLLFAELTRRISLLIMDDDELPIVHTDLTRTIHRVRPRQLPLMVDYEQNFVRESKGTGVFIPARLPPPRRKQRNAAAAAAYRIKSENKRLNSQPSSTYYFKPRKG

Homology

[Close]

BLAST of Lag0016692 vs. NCBI nr
Match: XP_022930457.1 (uncharacterized protein LOC111436898 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41
Identity = 93/112 (83.04%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPIVHTDLTRTIHRVRPRQLPLMVDYEQNFVR 60
           M+ EV DDDLLFAELTRRISLLIMDDDELP VHTDL+RTIHRVRP QLPLMVDYE  FVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAAYRIKSENKRLNSQPSSTYYFKPRK 113
           ESKGTGVFIP RLP P+RK RN      YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRN---VVGYRIKSENKRLNSQPSSTYYFKPKK 109

[Close]

BLAST of Lag0016692 vs. NCBI nr
Match: XP_023521928.1 (uncharacterized protein LOC111785772 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 2.8e-41
Identity = 92/112 (82.14%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPIVHTDLTRTIHRVRPRQLPLMVDYEQNFVR 60
           M+ EV+DDDLLFAELTRRISLLIMDDDE P VHTDL+RTIHRVRP QLPLMVDYE  FVR
Sbjct: 1   METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAAYRIKSENKRLNSQPSSTYYFKPRK 113
           ESKGTGVFIP RLP P+RK RN      YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRN---VVGYRIKSENKRLNSQPSSTYYFKPKK 109

[Close]

BLAST of Lag0016692 vs. NCBI nr
Match: KAG6593910.1 (hypothetical protein SDJN03_13386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.9 bits (450), Expect = 4.8e-41
Identity = 92/112 (82.14%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPIVHTDLTRTIHRVRPRQLPLMVDYEQNFVR 60
           M+ EV DDDLLFAELTRRISLLIMDDDELP VHTDL+RTIHRVRP +LPLMVDYE  FVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGKLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAAYRIKSENKRLNSQPSSTYYFKPRK 113
           ESKGTGVFIP RLP P+RK RN      YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRN---VVGYRIKSENKRLNSQPSSTYYFKPKK 109

[Close]

BLAST of Lag0016692 vs. NCBI nr
Match: XP_023515111.1 (uncharacterized protein LOC111779237 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 8.1e-41
Identity = 91/112 (81.25%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPIVHTDLTRTIHRVRPRQLPLMVDYEQNFVR 60
           M+ EV+DDDLLFAELTRRISLLIMDDDE P VHTDL+RTIHRVRP QLPLMVDYE  F R
Sbjct: 1   METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFAR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAAYRIKSENKRLNSQPSSTYYFKPRK 113
           ESKGTGVFIP RLP P+RK RN      YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRN---VVGYRIKSENKRLNSQPSSTYYFKPKK 109

[Close]

BLAST of Lag0016692 vs. NCBI nr
Match: KAG7026252.1 (Peroxiredoxin-2F, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-40
Identity = 91/112 (81.25%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPIVHTDLTRTIHRVRPRQLPLMVDYEQNFVR 60
           M+ EV DDDLLFAELTRRISLLIMDDDELP VHTDL+RTIHRVRP +LPLMVDYE  FVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGKLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAAYRIKSENKRLNSQPSSTYYFKPRK 113
           ESKGTGVFIP RLP P+RK  N      YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHGN---VVGYRIKSENKRLNSQPSSTYYFKPKK 109

The following BLAST results are available for this feature:

BLAST of Lag0016692 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930457.1	1.6e-41	83.04	uncharacterized protein LOC111436898 [Cucurbita moschata]	[more]
XP_023521928.1	2.8e-41	82.14	uncharacterized protein LOC111785772 [Cucurbita pepo subsp. pepo]	[more]
KAG6593910.1	4.8e-41	82.14	hypothetical protein SDJN03_13386, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023515111.1	8.1e-41	81.25	uncharacterized protein LOC111779237 [Cucurbita pepo subsp. pepo]	[more]
KAG7026252.1	3.1e-40	81.25	Peroxiredoxin-2F, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0016692 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..113
None	No IPR available	PANTHER	PTHR34956:SF2	OS05G0397300 PROTEIN	coord: 1..101
None	No IPR available	PANTHER	PTHR34956	OS05G0397300 PROTEIN	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016692.1	Lag0016692.1	mRNA