Lag0016529 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016529
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionC2H2-type domain-containing protein
Locationchr12: 38671760 .. 38672353 (-)
RNA-Seq ExpressionLag0016529
SyntenyLag0016529
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAATTTTGCCGCAGCACCGCCCAAGGAACCGCCGCCGATCTCCACCATCTACGCCCGCTAACGATTCCCGGCGGAAGCGGTCCGCTCGTCGCTTGCCGAATCTGCGACGCCGTGTTCTCCAGTAGCCAAGCCCTAATCAACCACATCGGAGCTCACGTCGCCGACGACGGCGCCGCCGCCGCCGTAGCAGCAGCAGCAGCTTCCAGAAGACATAATCAACAACGAAGCCAAATGCATCGGTTTCCGCCTGGTCCGCCGTTCTTGGCGCAGCCGCGAGCGACAGCGCTGTTTCTGCCGAGCAGATTCTCGGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCTAGAAACGTCTTCAGAGAGGGGCCGCCGCCGTGTGCTCCGCCCGTCGGCCAGTACTTGCCGAACTGGAGTGCGGCGGAGGAGGCGGCCGGCGACTGTACGAGGCCGTACATAAATCAATTGGAGAAATGTTTACCGAAAGTGGCGGACGGAGCTGAAGAAGACGACGCTCGTCAACTGTATTTCTGCAAACTAGACCTCACTCTAAAGCTCTAA

mRNA sequence

ATGGCCGAATTTTGCCGCAGCACCGCCCAAGGAACCGCCGCCGATCTCCACCATCTACGCCCGCTAACGATTCCCGGCGGAAGCGGTCCGCTCGTCGCTTGCCGAATCTGCGACGCCGTGTTCTCCAGTAGCCAAGCCCTAATCAACCACATCGGAGCTCACGTCGCCGACGACGGCGCCGCCGCCGCCGTAGCAGCAGCAGCAGCTTCCAGAAGACATAATCAACAACGAAGCCAAATGCATCGGTTTCCGCCTGGTCCGCCGTTCTTGGCGCAGCCGCGAGCGACAGCGCTGTTTCTGCCGAGCAGATTCTCGGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCTAGAAACGTCTTCAGAGAGGGGCCGCCGCCGTGTGCTCCGCCCGTCGGCCAGTACTTGCCGAACTGGAGTGCGGCGGAGGAGGCGGCCGGCGACTGTACGAGGCCGTACATAAATCAATTGGAGAAATGTTTACCGAAAGTGGCGGACGGAGCTGAAGAAGACGACGCTCGTCAACTGTATTTCTGCAAACTAGACCTCACTCTAAAGCTCTAA

Coding sequence (CDS)

ATGGCCGAATTTTGCCGCAGCACCGCCCAAGGAACCGCCGCCGATCTCCACCATCTACGCCCGCTAACGATTCCCGGCGGAAGCGGTCCGCTCGTCGCTTGCCGAATCTGCGACGCCGTGTTCTCCAGTAGCCAAGCCCTAATCAACCACATCGGAGCTCACGTCGCCGACGACGGCGCCGCCGCCGCCGTAGCAGCAGCAGCAGCTTCCAGAAGACATAATCAACAACGAAGCCAAATGCATCGGTTTCCGCCTGGTCCGCCGTTCTTGGCGCAGCCGCGAGCGACAGCGCTGTTTCTGCCGAGCAGATTCTCGGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCTAGAAACGTCTTCAGAGAGGGGCCGCCGCCGTGTGCTCCGCCCGTCGGCCAGTACTTGCCGAACTGGAGTGCGGCGGAGGAGGCGGCCGGCGACTGTACGAGGCCGTACATAAATCAATTGGAGAAATGTTTACCGAAAGTGGCGGACGGAGCTGAAGAAGACGACGCTCGTCAACTGTATTTCTGCAAACTAGACCTCACTCTAAAGCTCTAA

Protein sequence

MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWPNQLSPFARNVFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVADGAEEDDARQLYFCKLDLTLKL
Homology
BLAST of Lag0016529 vs. NCBI nr
Match: KAG6574909.1 (hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-73
Identity = 151/199 (75.88%), Postives = 165/199 (82.91%), Query Frame = 0

Query: 1   MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
           MAEF R+    TAADLHHLRPL IPG   PLVACRICDAVFSSSQALINHIGAHV+D+GA
Sbjct: 1   MAEFGRA----TAADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEGA 60

Query: 61  AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSA-PNSLGFDAAESLW 120
               ++AAASRR +QQRSQ HR PPGP     PRATA+FLPSR+S  PNSLGFDAAESLW
Sbjct: 61  ----SSAAASRRQSQQRSQTHRLPPGP-----PRATAMFLPSRYSVPPNSLGFDAAESLW 120

Query: 121 PNQLSPFARNVFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKV-ADGA 180
           PNQLSPFAR++FREGPP   PPVGQYL NW+AAEEA GDCT+PYINQLEKCLPKV   G 
Sbjct: 121 PNQLSPFARSLFREGPPSYPPPVGQYLTNWNAAEEATGDCTKPYINQLEKCLPKVGGGGG 180

Query: 181 EEDDARQLYFCKLDLTLKL 198
           EEDD RQLYF KLDL+L+L
Sbjct: 181 EEDDGRQLYFSKLDLSLRL 184

BLAST of Lag0016529 vs. NCBI nr
Match: KAA0050710.1 (hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 5.5e-61
Identity = 132/201 (65.67%), Postives = 148/201 (73.63%), Query Frame = 0

Query: 1   MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
           MA+F    A+GT ADLHHLRPL IPG   PLVACRICDAVFSSSQALINHIGAHV+D+G 
Sbjct: 1   MADF----ARGTTADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEG- 60

Query: 61  AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWP 120
                  A SRR   Q  Q  RFP GP FL   RATA+FLP+RFS+PNS+GF+ AES+W 
Sbjct: 61  -------ATSRRSQDQ--QQRRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWG 120

Query: 121 N-QLSPFARNVFREG-PPPCAPP--VGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVAD 180
           N Q+SPF R+VFR+G PPP  PP  VGQY  N    +E  GDCT+PYINQLEKCLPKV  
Sbjct: 121 NHQISPFGRSVFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGK 180

Query: 181 GAEEDDARQLYFCKLDLTLKL 198
           G EEDD RQLY  K+DLTLKL
Sbjct: 181 GGEEDDCRQLYLSKIDLTLKL 185

BLAST of Lag0016529 vs. NCBI nr
Match: KAE8651808.1 (hypothetical protein Csa_006798 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 4.0e-59
Identity = 130/201 (64.68%), Postives = 146/201 (72.64%), Query Frame = 0

Query: 1   MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
           MA+F R     T ADLHHLRPL IPG   PLVACRICDAVFSSSQALINHIGAHV+D+G 
Sbjct: 1   MADFARP----TPADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEG- 60

Query: 61  AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWP 120
                  A SRR  Q   Q  RFP GP FL  PRATA+FLP+R+S+PN +GF+ AES+W 
Sbjct: 61  -------ATSRRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWG 120

Query: 121 NQLSPFARNVFREG-PPPCAPP--VGQYLPNWSAAEE-AAGDCTRPYINQLEKCLPKVAD 180
           NQ+SPF R+VFREG   P  PP  +GQY  N  A EE   GDCT+PYINQLEKCLPKV +
Sbjct: 121 NQISPFGRSVFREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVGN 180

Query: 181 GAEEDDARQLYFCKLDLTLKL 198
           G EEDD RQLY  K+DLTLKL
Sbjct: 181 GGEEDDCRQLYLSKIDLTLKL 185

BLAST of Lag0016529 vs. NCBI nr
Match: KAB8495643.1 (hypothetical protein FH972_025385 [Carpinus fangiana])

HSP 1 Score: 72.0 bits (175), Expect = 6.4e-09
Identity = 66/190 (34.74%), Postives = 88/190 (46.32%), Query Frame = 0

Query: 25  PGGSGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQMHR-- 84
           P  S   +ACR+CD VF S+QALINHI +H+A++ +     AA+ SR+H    +++    
Sbjct: 27  PFQSPTQIACRLCDQVFMSTQALINHIESHMAEEES----TAASRSRQHRATTTRLPSQR 86

Query: 85  ---FPPGPPFLAQPRATALFLPSRFSAPN----------SLGFDAAESLWPNQLSPFARN 144
              F    P  A      L L  R S P+          S       +L P Q+SP AR 
Sbjct: 87  DLLFNCSQPNFATHPENRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QVSPMAR- 146

Query: 145 VFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVADGAEEDDARQLYF- 198
            F    P       Q      A EE  GDCT+PY++QLE  +  V   A+ +D     F 
Sbjct: 147 -FSSHAPQLILSSPQGQRRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRNDENSGIFG 206

BLAST of Lag0016529 vs. NCBI nr
Match: KAB1219262.1 (hypothetical protein CJ030_MR3G001255 [Morella rubra])

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-07
Identity = 61/195 (31.28%), Postives = 87/195 (44.62%), Query Frame = 0

Query: 25  PGGSGPL----VACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQM 84
           PGG  P     +ACR+CD VF S+QALINHI +H+ ++ +A             +    M
Sbjct: 18  PGGQRPYSPTRIACRLCDHVFLSTQALINHIESHMREEESARR-QHRTCGLPSTRDPFVM 77

Query: 85  HRFPPGPPFLAQPRATALFLP---SRFSAPNS---------LGFD---AAESLWPNQLSP 144
           + F P   ++A P  T + LP   +R               LG D   A+    P Q  P
Sbjct: 78  NSFLPA-NYIALPAPTGVTLPILENRLPPAGPVASSERHVLLGVDRIVASRPTLPPQSPP 137

Query: 145 FARNVFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVAD---GAEEDD 198
            ARN F   P    P   +       AE+   DCT+PY+NQL+  +  V D    +++ +
Sbjct: 138 MARNNFSLAPRLIVPASPR------QAEQPPKDCTKPYLNQLDHPIMAVVDITGSSDDHN 197

BLAST of Lag0016529 vs. ExPASy TrEMBL
Match: A0A5A7U6B7 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00040 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.7e-61
Identity = 132/201 (65.67%), Postives = 148/201 (73.63%), Query Frame = 0

Query: 1   MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
           MA+F    A+GT ADLHHLRPL IPG   PLVACRICDAVFSSSQALINHIGAHV+D+G 
Sbjct: 1   MADF----ARGTTADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEG- 60

Query: 61  AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWP 120
                  A SRR   Q  Q  RFP GP FL   RATA+FLP+RFS+PNS+GF+ AES+W 
Sbjct: 61  -------ATSRRSQDQ--QQRRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWG 120

Query: 121 N-QLSPFARNVFREG-PPPCAPP--VGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVAD 180
           N Q+SPF R+VFR+G PPP  PP  VGQY  N    +E  GDCT+PYINQLEKCLPKV  
Sbjct: 121 NHQISPFGRSVFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGK 180

Query: 181 GAEEDDARQLYFCKLDLTLKL 198
           G EEDD RQLY  K+DLTLKL
Sbjct: 181 GGEEDDCRQLYLSKIDLTLKL 185

BLAST of Lag0016529 vs. ExPASy TrEMBL
Match: A0A0A0LNN3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.2e-50
Identity = 116/183 (63.39%), Postives = 130/183 (71.04%), Query Frame = 0

Query: 1   MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
           MA+F R     T ADLHHLRPL IPG   PLVACRICDAVFSSSQALINHIGAHV+D+G 
Sbjct: 1   MADFARP----TPADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEG- 60

Query: 61  AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWP 120
                  A SRR  Q   Q  RFP GP FL  PRATA+FLP+R+S+PN +GF+ AES+W 
Sbjct: 61  -------ATSRRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWG 120

Query: 121 NQLSPFARNVFREG-PPPCAPP--VGQYLPNWSAAEE-AAGDCTRPYINQLEKCLPKVAD 180
           NQ+SPF R+VFREG   P  PP  +GQY  N  A EE   GDCT+PYINQLEKCLPKV  
Sbjct: 121 NQISPFGRSVFREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKG 167

BLAST of Lag0016529 vs. ExPASy TrEMBL
Match: A0A5N6L1V8 (C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_025385 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 66/190 (34.74%), Postives = 88/190 (46.32%), Query Frame = 0

Query: 25  PGGSGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQMHR-- 84
           P  S   +ACR+CD VF S+QALINHI +H+A++ +     AA+ SR+H    +++    
Sbjct: 27  PFQSPTQIACRLCDQVFMSTQALINHIESHMAEEES----TAASRSRQHRATTTRLPSQR 86

Query: 85  ---FPPGPPFLAQPRATALFLPSRFSAPN----------SLGFDAAESLWPNQLSPFARN 144
              F    P  A      L L  R S P+          S       +L P Q+SP AR 
Sbjct: 87  DLLFNCSQPNFATHPENRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QVSPMAR- 146

Query: 145 VFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVADGAEEDDARQLYF- 198
            F    P       Q      A EE  GDCT+PY++QLE  +  V   A+ +D     F 
Sbjct: 147 -FSSHAPQLILSSPQGQRRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRNDENSGIFG 206

BLAST of Lag0016529 vs. ExPASy TrEMBL
Match: A0A2N9E7H8 (C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-08
Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 0

Query: 32  VACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRS-QMHRFPPGPPFL 91
           +ACR+CD VF S+QALINHI +H+ ++ A + +           QR    + F P     
Sbjct: 26  IACRLCDNVFMSTQALINHIESHMGEEEATSRMQHRTNRLPIPSQRDICANPFQPNFALP 85

Query: 92  AQPRATALFLPSRFSAPNSLGFDAAESLW------------PNQLSPFARNVFREGPPPC 151
             PR T     +R      L        +            P  +SP ARN F       
Sbjct: 86  IPPRETQQLFENRLPVMQPLAPPERHPFYGLNRMIVPRPTLPPLVSPMARNNF------A 145

Query: 152 APPVGQYLPNWSAA-----EEAAGDCTRPYINQLEKCLPKVADGAEEDDARQLY--FCKL 198
            PP  Q++ +   A     EE +GDCT+PY+NQL+  + K+ D  + +D         KL
Sbjct: 146 VPP--QFILSAEQAQRRMVEEPSGDCTKPYLNQLDHPIMKLVDVTDSNDDNNSISGLNKL 203

BLAST of Lag0016529 vs. ExPASy TrEMBL
Match: A0A6A1W232 (C2H2-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR3G001255 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 61/195 (31.28%), Postives = 87/195 (44.62%), Query Frame = 0

Query: 25  PGGSGPL----VACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQM 84
           PGG  P     +ACR+CD VF S+QALINHI +H+ ++ +A             +    M
Sbjct: 18  PGGQRPYSPTRIACRLCDHVFLSTQALINHIESHMREEESARR-QHRTCGLPSTRDPFVM 77

Query: 85  HRFPPGPPFLAQPRATALFLP---SRFSAPNS---------LGFD---AAESLWPNQLSP 144
           + F P   ++A P  T + LP   +R               LG D   A+    P Q  P
Sbjct: 78  NSFLPA-NYIALPAPTGVTLPILENRLPPAGPVASSERHVLLGVDRIVASRPTLPPQSPP 137

Query: 145 FARNVFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVAD---GAEEDD 198
            ARN F   P    P   +       AE+   DCT+PY+NQL+  +  V D    +++ +
Sbjct: 138 MARNNFSLAPRLIVPASPR------QAEQPPKDCTKPYLNQLDHPIMAVVDITGSSDDHN 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6574909.12.2e-7375.88hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0050710.15.5e-6165.67hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa][more]
KAE8651808.14.0e-5964.68hypothetical protein Csa_006798 [Cucumis sativus][more]
KAB8495643.16.4e-0934.74hypothetical protein FH972_025385 [Carpinus fangiana][more]
KAB1219262.14.6e-0731.28hypothetical protein CJ030_MR3G001255 [Morella rubra][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U6B72.7e-6165.67C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A0A0LNN31.2e-5063.39C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 P... [more]
A0A5N6L1V83.1e-0934.74C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0253... [more]
A0A2N9E7H84.5e-0831.18C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799... [more]
A0A6A1W2322.2e-0731.28C2H2-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR3G0012... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 34..54
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 32..59
score: 8.725061

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016529.1Lag0016529.1mRNA