Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAATTTTGCCGCAGCACCGCCCAAGGAACCGCCGCCGATCTCCACCATCTACGCCCGCTAACGATTCCCGGCGGAAGCGGTCCGCTCGTCGCTTGCCGAATCTGCGACGCCGTGTTCTCCAGTAGCCAAGCCCTAATCAACCACATCGGAGCTCACGTCGCCGACGACGGCGCCGCCGCCGCCGTAGCAGCAGCAGCAGCTTCCAGAAGACATAATCAACAACGAAGCCAAATGCATCGGTTTCCGCCTGGTCCGCCGTTCTTGGCGCAGCCGCGAGCGACAGCGCTGTTTCTGCCGAGCAGATTCTCGGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCTAGAAACGTCTTCAGAGAGGGGCCGCCGCCGTGTGCTCCGCCCGTCGGCCAGTACTTGCCGAACTGGAGTGCGGCGGAGGAGGCGGCCGGCGACTGTACGAGGCCGTACATAAATCAATTGGAGAAATGTTTACCGAAAGTGGCGGACGGAGCTGAAGAAGACGACGCTCGTCAACTGTATTTCTGCAAACTAGACCTCACTCTAAAGCTCTAA
mRNA sequence
ATGGCCGAATTTTGCCGCAGCACCGCCCAAGGAACCGCCGCCGATCTCCACCATCTACGCCCGCTAACGATTCCCGGCGGAAGCGGTCCGCTCGTCGCTTGCCGAATCTGCGACGCCGTGTTCTCCAGTAGCCAAGCCCTAATCAACCACATCGGAGCTCACGTCGCCGACGACGGCGCCGCCGCCGCCGTAGCAGCAGCAGCAGCTTCCAGAAGACATAATCAACAACGAAGCCAAATGCATCGGTTTCCGCCTGGTCCGCCGTTCTTGGCGCAGCCGCGAGCGACAGCGCTGTTTCTGCCGAGCAGATTCTCGGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCTAGAAACGTCTTCAGAGAGGGGCCGCCGCCGTGTGCTCCGCCCGTCGGCCAGTACTTGCCGAACTGGAGTGCGGCGGAGGAGGCGGCCGGCGACTGTACGAGGCCGTACATAAATCAATTGGAGAAATGTTTACCGAAAGTGGCGGACGGAGCTGAAGAAGACGACGCTCGTCAACTGTATTTCTGCAAACTAGACCTCACTCTAAAGCTCTAA
Coding sequence (CDS)
ATGGCCGAATTTTGCCGCAGCACCGCCCAAGGAACCGCCGCCGATCTCCACCATCTACGCCCGCTAACGATTCCCGGCGGAAGCGGTCCGCTCGTCGCTTGCCGAATCTGCGACGCCGTGTTCTCCAGTAGCCAAGCCCTAATCAACCACATCGGAGCTCACGTCGCCGACGACGGCGCCGCCGCCGCCGTAGCAGCAGCAGCAGCTTCCAGAAGACATAATCAACAACGAAGCCAAATGCATCGGTTTCCGCCTGGTCCGCCGTTCTTGGCGCAGCCGCGAGCGACAGCGCTGTTTCTGCCGAGCAGATTCTCGGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCTAGAAACGTCTTCAGAGAGGGGCCGCCGCCGTGTGCTCCGCCCGTCGGCCAGTACTTGCCGAACTGGAGTGCGGCGGAGGAGGCGGCCGGCGACTGTACGAGGCCGTACATAAATCAATTGGAGAAATGTTTACCGAAAGTGGCGGACGGAGCTGAAGAAGACGACGCTCGTCAACTGTATTTCTGCAAACTAGACCTCACTCTAAAGCTCTAA
Protein sequence
MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWPNQLSPFARNVFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVADGAEEDDARQLYFCKLDLTLKL
Homology
BLAST of Lag0016529 vs. NCBI nr
Match:
KAG6574909.1 (hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 286.2 bits (731), Expect = 2.2e-73
Identity = 151/199 (75.88%), Postives = 165/199 (82.91%), Query Frame = 0
Query: 1 MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
MAEF R+ TAADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+GA
Sbjct: 1 MAEFGRA----TAADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEGA 60
Query: 61 AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSA-PNSLGFDAAESLW 120
++AAASRR +QQRSQ HR PPGP PRATA+FLPSR+S PNSLGFDAAESLW
Sbjct: 61 ----SSAAASRRQSQQRSQTHRLPPGP-----PRATAMFLPSRYSVPPNSLGFDAAESLW 120
Query: 121 PNQLSPFARNVFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKV-ADGA 180
PNQLSPFAR++FREGPP PPVGQYL NW+AAEEA GDCT+PYINQLEKCLPKV G
Sbjct: 121 PNQLSPFARSLFREGPPSYPPPVGQYLTNWNAAEEATGDCTKPYINQLEKCLPKVGGGGG 180
Query: 181 EEDDARQLYFCKLDLTLKL 198
EEDD RQLYF KLDL+L+L
Sbjct: 181 EEDDGRQLYFSKLDLSLRL 184
BLAST of Lag0016529 vs. NCBI nr
Match:
KAA0050710.1 (hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 245.0 bits (624), Expect = 5.5e-61
Identity = 132/201 (65.67%), Postives = 148/201 (73.63%), Query Frame = 0
Query: 1 MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
MA+F A+GT ADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+G
Sbjct: 1 MADF----ARGTTADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEG- 60
Query: 61 AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWP 120
A SRR Q Q RFP GP FL RATA+FLP+RFS+PNS+GF+ AES+W
Sbjct: 61 -------ATSRRSQDQ--QQRRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWG 120
Query: 121 N-QLSPFARNVFREG-PPPCAPP--VGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVAD 180
N Q+SPF R+VFR+G PPP PP VGQY N +E GDCT+PYINQLEKCLPKV
Sbjct: 121 NHQISPFGRSVFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGK 180
Query: 181 GAEEDDARQLYFCKLDLTLKL 198
G EEDD RQLY K+DLTLKL
Sbjct: 181 GGEEDDCRQLYLSKIDLTLKL 185
BLAST of Lag0016529 vs. NCBI nr
Match:
KAE8651808.1 (hypothetical protein Csa_006798 [Cucumis sativus])
HSP 1 Score: 238.8 bits (608), Expect = 4.0e-59
Identity = 130/201 (64.68%), Postives = 146/201 (72.64%), Query Frame = 0
Query: 1 MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
MA+F R T ADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+G
Sbjct: 1 MADFARP----TPADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEG- 60
Query: 61 AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWP 120
A SRR Q Q RFP GP FL PRATA+FLP+R+S+PN +GF+ AES+W
Sbjct: 61 -------ATSRRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWG 120
Query: 121 NQLSPFARNVFREG-PPPCAPP--VGQYLPNWSAAEE-AAGDCTRPYINQLEKCLPKVAD 180
NQ+SPF R+VFREG P PP +GQY N A EE GDCT+PYINQLEKCLPKV +
Sbjct: 121 NQISPFGRSVFREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVGN 180
Query: 181 GAEEDDARQLYFCKLDLTLKL 198
G EEDD RQLY K+DLTLKL
Sbjct: 181 GGEEDDCRQLYLSKIDLTLKL 185
BLAST of Lag0016529 vs. NCBI nr
Match:
KAB8495643.1 (hypothetical protein FH972_025385 [Carpinus fangiana])
HSP 1 Score: 72.0 bits (175), Expect = 6.4e-09
Identity = 66/190 (34.74%), Postives = 88/190 (46.32%), Query Frame = 0
Query: 25 PGGSGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQMHR-- 84
P S +ACR+CD VF S+QALINHI +H+A++ + AA+ SR+H +++
Sbjct: 27 PFQSPTQIACRLCDQVFMSTQALINHIESHMAEEES----TAASRSRQHRATTTRLPSQR 86
Query: 85 ---FPPGPPFLAQPRATALFLPSRFSAPN----------SLGFDAAESLWPNQLSPFARN 144
F P A L L R S P+ S +L P Q+SP AR
Sbjct: 87 DLLFNCSQPNFATHPENRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QVSPMAR- 146
Query: 145 VFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVADGAEEDDARQLYF- 198
F P Q A EE GDCT+PY++QLE + V A+ +D F
Sbjct: 147 -FSSHAPQLILSSPQGQRRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRNDENSGIFG 206
BLAST of Lag0016529 vs. NCBI nr
Match:
KAB1219262.1 (hypothetical protein CJ030_MR3G001255 [Morella rubra])
HSP 1 Score: 65.9 bits (159), Expect = 4.6e-07
Identity = 61/195 (31.28%), Postives = 87/195 (44.62%), Query Frame = 0
Query: 25 PGGSGPL----VACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQM 84
PGG P +ACR+CD VF S+QALINHI +H+ ++ +A + M
Sbjct: 18 PGGQRPYSPTRIACRLCDHVFLSTQALINHIESHMREEESARR-QHRTCGLPSTRDPFVM 77
Query: 85 HRFPPGPPFLAQPRATALFLP---SRFSAPNS---------LGFD---AAESLWPNQLSP 144
+ F P ++A P T + LP +R LG D A+ P Q P
Sbjct: 78 NSFLPA-NYIALPAPTGVTLPILENRLPPAGPVASSERHVLLGVDRIVASRPTLPPQSPP 137
Query: 145 FARNVFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVAD---GAEEDD 198
ARN F P P + AE+ DCT+PY+NQL+ + V D +++ +
Sbjct: 138 MARNNFSLAPRLIVPASPR------QAEQPPKDCTKPYLNQLDHPIMAVVDITGSSDDHN 197
BLAST of Lag0016529 vs. ExPASy TrEMBL
Match:
A0A5A7U6B7 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00040 PE=4 SV=1)
HSP 1 Score: 245.0 bits (624), Expect = 2.7e-61
Identity = 132/201 (65.67%), Postives = 148/201 (73.63%), Query Frame = 0
Query: 1 MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
MA+F A+GT ADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+G
Sbjct: 1 MADF----ARGTTADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEG- 60
Query: 61 AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWP 120
A SRR Q Q RFP GP FL RATA+FLP+RFS+PNS+GF+ AES+W
Sbjct: 61 -------ATSRRSQDQ--QQRRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWG 120
Query: 121 N-QLSPFARNVFREG-PPPCAPP--VGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVAD 180
N Q+SPF R+VFR+G PPP PP VGQY N +E GDCT+PYINQLEKCLPKV
Sbjct: 121 NHQISPFGRSVFRDGVPPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGK 180
Query: 181 GAEEDDARQLYFCKLDLTLKL 198
G EEDD RQLY K+DLTLKL
Sbjct: 181 GGEEDDCRQLYLSKIDLTLKL 185
BLAST of Lag0016529 vs. ExPASy TrEMBL
Match:
A0A0A0LNN3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 1.2e-50
Identity = 116/183 (63.39%), Postives = 130/183 (71.04%), Query Frame = 0
Query: 1 MAEFCRSTAQGTAADLHHLRPLTIPGGSGPLVACRICDAVFSSSQALINHIGAHVADDGA 60
MA+F R T ADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+G
Sbjct: 1 MADFARP----TPADLHHLRPLPIPG--SPLVACRICDAVFSSSQALINHIGAHVSDEG- 60
Query: 61 AAAVAAAAASRRHNQQRSQMHRFPPGPPFLAQPRATALFLPSRFSAPNSLGFDAAESLWP 120
A SRR Q Q RFP GP FL PRATA+FLP+R+S+PN +GF+ AES+W
Sbjct: 61 -------ATSRRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWG 120
Query: 121 NQLSPFARNVFREG-PPPCAPP--VGQYLPNWSAAEE-AAGDCTRPYINQLEKCLPKVAD 180
NQ+SPF R+VFREG P PP +GQY N A EE GDCT+PYINQLEKCLPKV
Sbjct: 121 NQISPFGRSVFREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKG 167
BLAST of Lag0016529 vs. ExPASy TrEMBL
Match:
A0A5N6L1V8 (C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_025385 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 66/190 (34.74%), Postives = 88/190 (46.32%), Query Frame = 0
Query: 25 PGGSGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQMHR-- 84
P S +ACR+CD VF S+QALINHI +H+A++ + AA+ SR+H +++
Sbjct: 27 PFQSPTQIACRLCDQVFMSTQALINHIESHMAEEES----TAASRSRQHRATTTRLPSQR 86
Query: 85 ---FPPGPPFLAQPRATALFLPSRFSAPN----------SLGFDAAESLWPNQLSPFARN 144
F P A L L R S P+ S +L P Q+SP AR
Sbjct: 87 DLLFNCSQPNFATHPENRLPLVQRPSQPSERHPFLCVHRSFAPPPPPTLLP-QVSPMAR- 146
Query: 145 VFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVADGAEEDDARQLYF- 198
F P Q A EE GDCT+PY++QLE + V A+ +D F
Sbjct: 147 -FSSHAPQLILSSPQGQRRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRNDENSGIFG 206
BLAST of Lag0016529 vs. ExPASy TrEMBL
Match:
A0A2N9E7H8 (C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 4.5e-08
Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 0
Query: 32 VACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRS-QMHRFPPGPPFL 91
+ACR+CD VF S+QALINHI +H+ ++ A + + QR + F P
Sbjct: 26 IACRLCDNVFMSTQALINHIESHMGEEEATSRMQHRTNRLPIPSQRDICANPFQPNFALP 85
Query: 92 AQPRATALFLPSRFSAPNSLGFDAAESLW------------PNQLSPFARNVFREGPPPC 151
PR T +R L + P +SP ARN F
Sbjct: 86 IPPRETQQLFENRLPVMQPLAPPERHPFYGLNRMIVPRPTLPPLVSPMARNNF------A 145
Query: 152 APPVGQYLPNWSAA-----EEAAGDCTRPYINQLEKCLPKVADGAEEDDARQLY--FCKL 198
PP Q++ + A EE +GDCT+PY+NQL+ + K+ D + +D KL
Sbjct: 146 VPP--QFILSAEQAQRRMVEEPSGDCTKPYLNQLDHPIMKLVDVTDSNDDNNSISGLNKL 203
BLAST of Lag0016529 vs. ExPASy TrEMBL
Match:
A0A6A1W232 (C2H2-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR3G001255 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 61/195 (31.28%), Postives = 87/195 (44.62%), Query Frame = 0
Query: 25 PGGSGPL----VACRICDAVFSSSQALINHIGAHVADDGAAAAVAAAAASRRHNQQRSQM 84
PGG P +ACR+CD VF S+QALINHI +H+ ++ +A + M
Sbjct: 18 PGGQRPYSPTRIACRLCDHVFLSTQALINHIESHMREEESARR-QHRTCGLPSTRDPFVM 77
Query: 85 HRFPPGPPFLAQPRATALFLP---SRFSAPNS---------LGFD---AAESLWPNQLSP 144
+ F P ++A P T + LP +R LG D A+ P Q P
Sbjct: 78 NSFLPA-NYIALPAPTGVTLPILENRLPPAGPVASSERHVLLGVDRIVASRPTLPPQSPP 137
Query: 145 FARNVFREGPPPCAPPVGQYLPNWSAAEEAAGDCTRPYINQLEKCLPKVAD---GAEEDD 198
ARN F P P + AE+ DCT+PY+NQL+ + V D +++ +
Sbjct: 138 MARNNFSLAPRLIVPASPR------QAEQPPKDCTKPYLNQLDHPIMAVVDITGSSDDHN 197
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6574909.1 | 2.2e-73 | 75.88 | hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0050710.1 | 5.5e-61 | 65.67 | hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa] | [more] |
KAE8651808.1 | 4.0e-59 | 64.68 | hypothetical protein Csa_006798 [Cucumis sativus] | [more] |
KAB8495643.1 | 6.4e-09 | 34.74 | hypothetical protein FH972_025385 [Carpinus fangiana] | [more] |
KAB1219262.1 | 4.6e-07 | 31.28 | hypothetical protein CJ030_MR3G001255 [Morella rubra] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U6B7 | 2.7e-61 | 65.67 | C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
A0A0A0LNN3 | 1.2e-50 | 63.39 | C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 P... | [more] |
A0A5N6L1V8 | 3.1e-09 | 34.74 | C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0253... | [more] |
A0A2N9E7H8 | 4.5e-08 | 31.18 | C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799... | [more] |
A0A6A1W232 | 2.2e-07 | 31.28 | C2H2-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR3G0012... | [more] |