Lag0016271 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016271
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	50S ribosomal protein HLP, mitochondrial-like
Location	chr12: 35536685 .. 35539082 (-)
RNA-Seq Expression	Lag0016271
Synteny	Lag0016271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGGTTTCGCTTCCAAATGTTCACGTGGTATGTCATTATCTGAAGATTTCCGAGCGGACGCTTGAATTTCGCTTCATCTTTTTCCTTTTTCCTCACTTTTTAATCTGTTGGAAGCTCTATAAGATTTTCTTCTAAGGTTTTCTACGCGTTCTGGACCTTCATTTCACTTGGTTTAGCTTAGAAATGCTGCTTTTAGGTTTGTTTCTGATTGCTCTGTTTATACTTATCATGATTGCTATTGTTTCAGCTCATGCATTGTTTACTTGCTTTTAATAAGAAACTCAATTTCGTGAAAAGATAGATAATCTGCAAGAGAAGTAGGCCAATAAATCCTAAAAAGCGAGTCTAAGAGTAAATGGTTAGATAATTCTACTCGACATGTAACTTTGGAAGATAAGAAAACGATATCATGAAGAATTACTACAGTGGATCTCTTCAAGAAAAACTATTGTCGTGGTAGGTCGTAAGGAAGATGAAAAGAACAGTTCGAGAGTCCCATAGGATGATTCTCCTCCAAGCAATCCTTAGAACTATACATGTGTTTCTCTTCCAAACACATCATAAATTGCCTAAGTAGTGCAGTTCAGAGGAATTTTCTTGAAAATCTTCCATGAACAACTGTTCCACTTCCATTAGGAAAAACTTGGCCTCAATAACTAGGCGGCACCATATAACACTCGCCATGTCTTACTCCCTCCGCACTTTTTTAGTACAACAAATGTGAGGGTTGCGGATTTGAACCTTCCACCTCAGGGGAAGGAGTAGATGTCTCTTATTCGCTGAGCTATACTCAAGTTGACAGCTCTTCTGCTCACTCCCCGTATGCTCTTCAGACCCATGCTCTTCTCCCGCTTACATGTACATATAAAGAAAGAGAGTGCTTGTTTAATCCCAATTCGCTATCCCATCATCATCAAACTATACGTGGAACTTGGAAGCTGCAAGTCTTATTTGATTCCCCAGACAAAGTATAAAGATGGGATTATACATCTTGCAGCATGTTAAATTTTTTTGTTTGAATGTTCTCTGAAGTTGATTTTAATCCCTTTTTCTTACTATTGCTCCTTCGAACCTGTGGTAAAAATTTATATTTAATAGTGAATTTTTACTCTGTTATTTGTTATATTTTATTTTTGTATTTCAAGCTGTTATGAAACTCATTCTGGCTCATTGTTTTGTGCTATATGTTTCTGAAAAATTAAACTAGTGGGTCGGTCATTGTTGGGTGGACTTGGGAACAATTTGTCTGGTTTATTGAGCACATCGAGTGAGACAGCGAGCAGCAGTTTCATCTTGCAGGTTTGCTTCTCTGAAATTTTAATCTTCTCATCTGACTTTCAACCCTGAAAAGAGAATTGAAAGAAAGAACGTAATGTGCAGTATAATCATATGCATGGGCTTTACAAAGCGCATGCCTTTTGGTCGCTGCTTGTCTAAAGATTACTATTTAGTCGATGGTAGGGCTATAAAATAGGCATTTAGGAGCCAACATTCATGCAGAACTCAGGAAACTTGTTCTGAGGCTAGTTTGGAATAACAGGGATTTAGTTCAAGATACAACTGCTTGCAAATGTTATTCTGCACTGGAAATGATATTCATTCATAAATCGAACCTGTGCTTTGCTTGTGCTGATGACCCTGCTTAAAATCTAATGAAAGTAAAATTTTGCACTTGGACATATAACACCTTGAATTCTTGGCTGGTGTAAATGTTTTTTCTCCCCTTTTAGATTACATATGAAATGACCTTGAGTTGGAGGACCTTCTTAATATTCCTTTTATGATTGGGCTCTTTTCCATTCTTTTGTATATTACATCATATCAATGAAATCTATATTTCTTATTGAAAAAAATACATATAGCACCTTGAAGAGATAACCAAGGGTTGGAATAAAATTCATTTAAAGAGATATAATAGAAATATTAATGATTGTTCTCTGAGGCATAAAATTCCAACAAAACAATCAATCTCTGAATAACAATGGCTGGCCTTGTGTATTCATTCATCTTTTGCAGCAACAAAGAACTTTCATACAGATGAGGACCGTGCTTAAAGTAGTGGACAACTCAGGGGCGAAAAAGGTGATGTGCATACAAGCTTTGAAGGGGAAGAAAGGAGCGCGACTCGGAGACACGATAGTTGCTTCAGTGAAGGAAGCCCATCCTAATGGCAAAGTGAAGAAAGGAAAGGTTGTATATGGAGTGGTTGTGCGAGCTGCAATGCAAAGAGGTAGGTGTGATGGGAGTGAGGTCAAGTTTGATGATAATGCCGTTGTACTTGTTGATAAGCAAGGCCAGCCTATTGGGACTAGAGTGTTTGGTCCAGTTCCTCATGAACTCAGGAAGAAAAAGCATGTAAAGATTCTCACATTGGCAGAGCACATTGCTTGA

mRNA sequence

ATGGCTGCAGGTTTCGCTTCCAAATGTTCACGTGGGGAAGGAGTAGATGTCTCTTATTCGCTGAGCTATACTCAAGTTGACAGCTCTTCTGCTCACTCCCCGTATGCTCTTCAGACCCATGCTCTTCTCCCGCTTACATTGGGTCGGTCATTGTTGGGTGGACTTGGGAACAATTTGTCTGGTTTATTGAGCACATCGAGTGAGACAGCGAGCAGCAGTTTCATCTTGCAGCAACAAAGAACTTTCATACAGATGAGGACCGTGCTTAAAGTAGTGGACAACTCAGGGGCGAAAAAGGTGATGTGCATACAAGCTTTGAAGGGGAAGAAAGGAGCGCGACTCGGAGACACGATAGTTGCTTCAGTGAAGGAAGCCCATCCTAATGGCAAAGTGAAGAAAGGAAAGGTTGTATATGGAGTGGTTGTGCGAGCTGCAATGCAAAGAGGTAGGTGTGATGGGAGTGAGGTCAAGTTTGATGATAATGCCGTTGTACTTGTTGATAAGCAAGGCCAGCCTATTGGGACTAGAGTGTTTGGTCCAGTTCCTCATGAACTCAGGAAGAAAAAGCATGTAAAGATTCTCACATTGGCAGAGCACATTGCTTGA

Coding sequence (CDS)

ATGGCTGCAGGTTTCGCTTCCAAATGTTCACGTGGGGAAGGAGTAGATGTCTCTTATTCGCTGAGCTATACTCAAGTTGACAGCTCTTCTGCTCACTCCCCGTATGCTCTTCAGACCCATGCTCTTCTCCCGCTTACATTGGGTCGGTCATTGTTGGGTGGACTTGGGAACAATTTGTCTGGTTTATTGAGCACATCGAGTGAGACAGCGAGCAGCAGTTTCATCTTGCAGCAACAAAGAACTTTCATACAGATGAGGACCGTGCTTAAAGTAGTGGACAACTCAGGGGCGAAAAAGGTGATGTGCATACAAGCTTTGAAGGGGAAGAAAGGAGCGCGACTCGGAGACACGATAGTTGCTTCAGTGAAGGAAGCCCATCCTAATGGCAAAGTGAAGAAAGGAAAGGTTGTATATGGAGTGGTTGTGCGAGCTGCAATGCAAAGAGGTAGGTGTGATGGGAGTGAGGTCAAGTTTGATGATAATGCCGTTGTACTTGTTGATAAGCAAGGCCAGCCTATTGGGACTAGAGTGTTTGGTCCAGTTCCTCATGAACTCAGGAAGAAAAAGCATGTAAAGATTCTCACATTGGCAGAGCACATTGCTTGA

Protein sequence

MAAGFASKCSRGEGVDVSYSLSYTQVDSSSAHSPYALQTHALLPLTLGRSLLGGLGNNLSGLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA

Homology

[Close]

BLAST of Lag0016271 vs. NCBI nr
Match: XP_022146695.1 (50S ribosomal protein HLP, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 288.5 bits (737), Expect = 4.4e-74
Identity = 149/156 (95.51%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 46  TLGRSLLGGLGNNLSGLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQA 105
           TLGRSLLGGLGNNL GLLST+ ET  SSFI QQQRTFIQMRTVLKVVDNSGAKKVMCIQA
Sbjct: 40  TLGRSLLGGLGNNLPGLLSTAQETVCSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQA 99

Query: 106 LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVL 165
           LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSEVKFDDNAVVL
Sbjct: 100 LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVL 159

Query: 166 VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 160 VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 195

[Close]

BLAST of Lag0016271 vs. NCBI nr
Match: XP_022146696.1 (50S ribosomal protein HLP, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-73
Identity = 157/201 (78.11%), Postives = 160/201 (79.60%), Query Frame = 0


Query: 1   MAAGFASKCSRGEGVDVSYSLSYTQVDSSSAHSPYALQTHALLPLTLGRSLLGGLGNNLS 60
           MAA FASKCSR                                   +GRSLLGGLGNNL 
Sbjct: 1   MAAAFASKCSR-----------------------------------VGRSLLGGLGNNLP 60

Query: 61  GLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVA 120
           GLLST+ ET  SSFI QQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVA
Sbjct: 61  GLLSTAQETVCSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVA 120

Query: 121 SVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP 180
           SVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP
Sbjct: 121 SVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP 166

Query: 181 VPHELRKKKHVKILTLAEHIA 202
           VPHELRKKKHVKILTLAEHIA
Sbjct: 181 VPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lag0016271 vs. NCBI nr
Match: XP_016899460.1 (PREDICTED: 50S ribosomal protein HLP, mitochondrial-like [Cucumis melo] >XP_016899461.1 PREDICTED: 50S ribosomal protein HLP, mitochondrial-like [Cucumis melo] >XP_016899462.1 PREDICTED: 50S ribosomal protein HLP, mitochondrial-like [Cucumis melo])

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-72
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 47  LGRSLLGGLGNNLSGLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 106
           +GRSLLGGLGNNL G L+TS+ET  +SFI+QQQRTFIQMRTVLKVVDNSGAKKVMCIQAL
Sbjct: 12  VGRSLLGGLGNNLYGSLTTSNETVCNSFIMQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 107 KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLV 166
           KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSEVKFDDNAVVLV
Sbjct: 72  KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLV 131

Query: 167 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 132 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lag0016271 vs. NCBI nr
Match: XP_038886447.1 (50S ribosomal protein HLP, mitochondrial-like [Benincasa hispida] >XP_038886449.1 50S ribosomal protein HLP, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-72
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 47  LGRSLLGGLGNNLSGLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 106
           +GRSLLGGLG+NLSG L+TS+ET  SS ILQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL
Sbjct: 12  VGRSLLGGLGSNLSGSLTTSNETVCSSSILQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 107 KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLV 166
           KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSEVKFDDNAVVLV
Sbjct: 72  KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLV 131

Query: 167 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 132 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lag0016271 vs. NCBI nr
Match: KAG6594454.1 (50S ribosomal protein HLP, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-72
Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 47  LGRSLLGGLGNNLSGLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 106
           +GRSLLGGLGN LSG LS+SSET  SSFI QQQRTFIQMRTVLKVVDNSGAKKVMCIQAL
Sbjct: 13  VGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 72

Query: 107 KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLV 166
           KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSEVKFDDNAVVLV
Sbjct: 73  KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLV 132

Query: 167 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 133 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167

[Close]

BLAST of Lag0016271 vs. ExPASy Swiss-Prot
Match: Q93Z17 (50S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLP PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.6e-58
Identity = 125/163 (76.69%), Postives = 136/163 (83.44%), Query Frame = 0


Query: 48  GRSLLGGLGNNLSGLLSTSSETASSSFILQQQ--RTFIQMRTVLKVVDNSGAKKVMCIQA 107
           GRSLLGGL N   G +++S+   + S + QQQ  RTFIQM TVLKVVDNSGAKKVMCIQA
Sbjct: 13  GRSLLGGLNN--GGSMNSSNGMMNESILSQQQQRRTFIQMGTVLKVVDNSGAKKVMCIQA 72

Query: 108 LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVL 167
           LKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQRGR DGSEV+FDDNAVVL
Sbjct: 73  LKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVL 132

Query: 168 VDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           VD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 133 VDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 173

[Close]

BLAST of Lag0016271 vs. ExPASy Swiss-Prot
Match: Q84JG5 (50S ribosomal protein HLL, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLL PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.7e-47
Identity = 112/187 (59.89%), Postives = 133/187 (71.12%), Query Frame = 0


Query: 45  LTLGRSLLGGLGNNLSGLLSTSSETASSSFIL--QQQRTFIQMRTVLKVVDNSGAKKVMC 104
           L+ GRSLLGGL N  SGL+++SS    +  IL  QQ RTFIQM T+LK VDNS AK+VMC
Sbjct: 9   LSKGRSLLGGLCNAFSGLMNSSSNGMMNGSILSQQQHRTFIQMGTILKCVDNSCAKEVMC 68

Query: 105 IQALKGKKGARLGDTIVASVKEAH------------PNGKVKKGKVVYGVVVRAAMQRGR 164
           IQ+L+GKKGARLGD IV SVKEA+            P GKVKKG VVYGVVVRAAM +GR
Sbjct: 69  IQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVYGVVVRAAMPKGR 128

Query: 165 CDGSEVKFDDNAVVLV---DKQG--------------QPIGTRVFGPVPHELRKKKHVKI 201
            DGS+VKFDDNA+V+V   +K+G              QP GTRVFGPVPHE+R +K +KI
Sbjct: 129 ADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEYNQPTGTRVFGPVPHEMRLRKQLKI 188

[Close]

BLAST of Lag0016271 vs. ExPASy Swiss-Prot
Match: A8GVC4 (50S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rplN PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.3e-32
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 83  IQMRTVLKVVDNSGAKKVMCIQALKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 142
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 143 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 201
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]

BLAST of Lag0016271 vs. ExPASy Swiss-Prot
Match: Q1RHN1 (50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rplN PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.3e-32
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 83  IQMRTVLKVVDNSGAKKVMCIQALKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 142
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 143 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 201
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]

BLAST of Lag0016271 vs. ExPASy Swiss-Prot
Match: Q9ZCR5 (50S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=rplN PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-32
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 83  IQMRTVLKVVDNSGAKKVMCIQALKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 142
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMMAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 143 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 201
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRSDGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]

BLAST of Lag0016271 vs. ExPASy TrEMBL
Match: A0A6J1CXZ6 (50S ribosomal protein HLP, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015838 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.2e-74
Identity = 149/156 (95.51%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 46  TLGRSLLGGLGNNLSGLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQA 105
           TLGRSLLGGLGNNL GLLST+ ET  SSFI QQQRTFIQMRTVLKVVDNSGAKKVMCIQA
Sbjct: 40  TLGRSLLGGLGNNLPGLLSTAQETVCSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQA 99

Query: 106 LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVL 165
           LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSEVKFDDNAVVL
Sbjct: 100 LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVL 159

Query: 166 VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 160 VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 195

[Close]

BLAST of Lag0016271 vs. ExPASy TrEMBL
Match: A0A6J1D048 (50S ribosomal protein HLP, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015838 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 157/201 (78.11%), Postives = 160/201 (79.60%), Query Frame = 0


Query: 1   MAAGFASKCSRGEGVDVSYSLSYTQVDSSSAHSPYALQTHALLPLTLGRSLLGGLGNNLS 60
           MAA FASKCSR                                   +GRSLLGGLGNNL 
Sbjct: 1   MAAAFASKCSR-----------------------------------VGRSLLGGLGNNLP 60

Query: 61  GLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVA 120
           GLLST+ ET  SSFI QQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVA
Sbjct: 61  GLLSTAQETVCSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVA 120

Query: 121 SVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP 180
           SVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP
Sbjct: 121 SVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP 166

Query: 181 VPHELRKKKHVKILTLAEHIA 202
           VPHELRKKKHVKILTLAEHIA
Sbjct: 181 VPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lag0016271 vs. ExPASy TrEMBL
Match: A0A1S4DUR6 (50S ribosomal protein HLP, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC107990521 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.9e-73
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 47  LGRSLLGGLGNNLSGLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 106
           +GRSLLGGLGNNL G L+TS+ET  +SFI+QQQRTFIQMRTVLKVVDNSGAKKVMCIQAL
Sbjct: 12  VGRSLLGGLGNNLYGSLTTSNETVCNSFIMQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 107 KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLV 166
           KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSEVKFDDNAVVLV
Sbjct: 72  KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLV 131

Query: 167 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 132 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lag0016271 vs. ExPASy TrEMBL
Match: A0A0A0LME7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401350 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.0e-72
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 47  LGRSLLGGLGNNLSGLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 106
           +GRSLLGGLGNNLSG L+TS+ET  +SFI QQQRTFIQMRTVLKVVDNSGAKKVMCIQAL
Sbjct: 12  VGRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 107 KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLV 166
           KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+ RCDGSEVKFDDNAVVLV
Sbjct: 72  KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKDRCDGSEVKFDDNAVVLV 131

Query: 167 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 132 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lag0016271 vs. ExPASy TrEMBL
Match: A0A6J1EE21 (50S ribosomal protein HLP, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111433311 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.0e-72
Identity = 155/201 (77.11%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 1   MAAGFASKCSRGEGVDVSYSLSYTQVDSSSAHSPYALQTHALLPLTLGRSLLGGLGNNLS 60
           MAA FASKCSR                                   +GRSLLGGLG NLS
Sbjct: 1   MAAAFASKCSR-----------------------------------VGRSLLGGLGKNLS 60

Query: 61  GLLSTSSETASSSFILQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVA 120
           G L+ S+ET  SSFI QQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVA
Sbjct: 61  GSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVA 120

Query: 121 SVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP 180
           SVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP
Sbjct: 121 SVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGP 166

Query: 181 VPHELRKKKHVKILTLAEHIA 202
           VPHELRKKKHVKILTLAEHIA
Sbjct: 181 VPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lag0016271 vs. TAIR 10
Match: AT5G46160.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 226.1 bits (575), Expect = 2.5e-59
Identity = 125/162 (77.16%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 48  GRSLLGGLGNNLSGLLSTSSETASSSFILQQQ-RTFIQMRTVLKVVDNSGAKKVMCIQAL 107
           GRSLLGGL N   G +++S+   + S + QQQ RTFIQM TVLKVVDNSGAKKVMCIQAL
Sbjct: 13  GRSLLGGLNN--GGSMNSSNGMMNESILSQQQRRTFIQMGTVLKVVDNSGAKKVMCIQAL 72

Query: 108 KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLV 167
           KGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQRGR DGSEV+FDDNAVVLV
Sbjct: 73  KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLV 132

Query: 168 DKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           D +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 133 DSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 172

[Close]

BLAST of Lag0016271 vs. TAIR 10
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 225.7 bits (574), Expect = 3.3e-59
Identity = 125/163 (76.69%), Postives = 136/163 (83.44%), Query Frame = 0


Query: 48  GRSLLGGLGNNLSGLLSTSSETASSSFILQQQ--RTFIQMRTVLKVVDNSGAKKVMCIQA 107
           GRSLLGGL N   G +++S+   + S + QQQ  RTFIQM TVLKVVDNSGAKKVMCIQA
Sbjct: 13  GRSLLGGLNN--GGSMNSSNGMMNESILSQQQQRRTFIQMGTVLKVVDNSGAKKVMCIQA 72

Query: 108 LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVL 167
           LKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQRGR DGSEV+FDDNAVVL
Sbjct: 73  LKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVL 132

Query: 168 VDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 202
           VD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 133 VDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 173

[Close]

BLAST of Lag0016271 vs. TAIR 10
Match: AT1G17560.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 189.5 bits (480), Expect = 2.6e-48
Identity = 112/187 (59.89%), Postives = 133/187 (71.12%), Query Frame = 0


Query: 45  LTLGRSLLGGLGNNLSGLLSTSSETASSSFIL--QQQRTFIQMRTVLKVVDNSGAKKVMC 104
           L+ GRSLLGGL N  SGL+++SS    +  IL  QQ RTFIQM T+LK VDNS AK+VMC
Sbjct: 9   LSKGRSLLGGLCNAFSGLMNSSSNGMMNGSILSQQQHRTFIQMGTILKCVDNSCAKEVMC 68

Query: 105 IQALKGKKGARLGDTIVASVKEAH------------PNGKVKKGKVVYGVVVRAAMQRGR 164
           IQ+L+GKKGARLGD IV SVKEA+            P GKVKKG VVYGVVVRAAM +GR
Sbjct: 69  IQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVYGVVVRAAMPKGR 128

Query: 165 CDGSEVKFDDNAVVLV---DKQG--------------QPIGTRVFGPVPHELRKKKHVKI 201
            DGS+VKFDDNA+V+V   +K+G              QP GTRVFGPVPHE+R +K +KI
Sbjct: 129 ADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEYNQPTGTRVFGPVPHEMRLRKQLKI 188

[Close]

BLAST of Lag0016271 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-23
Identity = 52/120 (43.33%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 83  IQMRTVLKVVDNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGV 142
           IQ +T L V DNSGA+++MCI+ +    ++ A +GD IVA +KEA PN  +++ +V+  V
Sbjct: 2   IQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAV 61

Query: 143 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 201
           +VR   +  R +G+ +++DDNA V++D++G P GTRVFG +P ELR+    KI++LA  +
Sbjct: 62  IVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEV 121

[Close]

BLAST of Lag0016271 vs. TAIR 10
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-07
Identity = 36/109 (33.03%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 83  IQMRTVLKVVDNSGAKKVMCIQALKGKKG-------ARLGDTIVASVKEAHPNGKVKKGK 142
           + +   +   DN+GAK +  I ++KG KG       A +GD ++A+VK+  P+    + K
Sbjct: 20  LPVAATVNCADNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKK 79

Query: 143 VVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHE 185
           V+  V+VR      R DG  + F+DNA V+V+ +G+  G+ + GP+  E
Sbjct: 80  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124

The following BLAST results are available for this feature:

BLAST of Lag0016271 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146695.1	4.4e-74	95.51	50S ribosomal protein HLP, mitochondrial isoform X1 [Momordica charantia]	[more]
XP_022146696.1	2.2e-73	78.11	50S ribosomal protein HLP, mitochondrial isoform X2 [Momordica charantia]	[more]
XP_016899460.1	1.4e-72	93.55	PREDICTED: 50S ribosomal protein HLP, mitochondrial-like [Cucumis melo] >XP_0168...	[more]
XP_038886447.1	2.4e-72	94.19	50S ribosomal protein HLP, mitochondrial-like [Benincasa hispida] >XP_038886449....	[more]
KAG6594454.1	2.4e-72	94.84	50S ribosomal protein HLP, mitochondrial, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Lag0016271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Z17	4.6e-58	76.69	50S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLP ...	[more]
Q84JG5	3.7e-47	59.89	50S ribosomal protein HLL, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLL ...	[more]
A8GVC4	3.3e-32	60.83	50S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=...	[more]
Q1RHN1	3.3e-32	60.83	50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp...	[more]
Q9ZCR5	4.4e-32	60.83	50S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 G...	[more]

BLAST of Lag0016271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CXZ6	2.2e-74	95.51	50S ribosomal protein HLP, mitochondrial isoform X1 OS=Momordica charantia OX=36...	[more]
A0A6J1D048	1.1e-73	78.11	50S ribosomal protein HLP, mitochondrial isoform X2 OS=Momordica charantia OX=36...	[more]
A0A1S4DUR6	6.9e-73	93.55	50S ribosomal protein HLP, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A0A0LME7	2.0e-72	93.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401350 PE=3 SV=1	[more]
A0A6J1EE21	2.0e-72	77.11	50S ribosomal protein HLP, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Lag0016271 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46160.2	2.5e-59	77.16	Ribosomal protein L14p/L23e family protein	[more]
AT5G46160.1	3.3e-59	76.69	Ribosomal protein L14p/L23e family protein	[more]
AT1G17560.1	2.6e-48	59.89	Ribosomal protein L14p/L23e family protein	[more]
ATCG00780.1	1.3e-23	43.33	ribosomal protein L14	[more]
AT1G04480.1	2.9e-07	33.03	Ribosomal protein L14p/L23e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 82..201 e-value: 1.0E-62 score: 224.4
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 83..200 e-value: 1.6E-49 score: 166.9
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 58..201
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 82..201 score: 23.608328
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 82..201 e-value: 1.3E-47 score: 162.6
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 83..200
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAM	TIGR01067	TIGR01067	coord: 83..200 e-value: 2.7E-43 score: 144.7
None	No IPR available	PANTHER	PTHR11761:SF38	50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1	coord: 58..201
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 139..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016271.1	Lag0016271.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome