Lag0016136 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016136
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	serine/threonine-protein phosphatase 7 long form homolog
Location	chr12: 33761509 .. 33763604 (+)
RNA-Seq Expression	Lag0016136
Synteny	Lag0016136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCTACACTTCCTCTCTCACACCGTTCTTGTTGCGCCACCGCCTGCAGACCGCCGTCCGTCGACTTCGTAGGTATCATTTAACTTTTTTTTCTTTTTTCTTGTATCAAAATTTTCATTGATGTTTGTTTAACATTTAGTTTGTATTTGGTGGAGTAATGGAGTTTTAGGCACATTTTAGACTCATTCTAAGTTTATGGACGGGTTTAGACTCATTTTAGGTTTATGGATTGTTGTAGACTAATTTTTGGATGATTTATGAACTGTTTTATAATGATTTTTGGATGGTTTATGACTGTTTTATACTGAGTTGGATGTTTTTGGACTGATTTGGGTGGTTTTTGGATTGATTTTGGCCACTTATGTGTTTTTAATTTTTCAGTATTAAATATGGAACGACGTGGACCAATTATCCAAGGCACTTATATTTATAACGTACTCATCGTTCACAGTCGATATGAGATAAACAATCCACTATCATCTTACAATGTCAAAGAAGAGAGGCAGTTAATCGAAATATTAATATAGATCAACAAAAAGTGCCTTATTTACAACCGACTGGATTTTGGGGGTTGCACAGATTGGGTTTATGCAACTAAATTGGCATCTTATCACTGCGTTAGTTGAGCGATGGAGACATGAAAATCATACATTCCACCTGCTTTGTGGAGAGTGTACTATTACACTTCAAGGTGTTGCAGTGCAATTTGGATTACCTATATATGGAGAACCTGTAACTGGCTCATATACAGTATAATTGGGGACAGGTAATATGAGGATTTTTTAGAAGTTCAACCCCCTGAATTGCATGGGTCAAGATTAAGCATTCCATGGTTTGCAGCACAGTTTACAAAGTTTCCCCCTAATGTCGACAACATCACCATACAGAGACATGCAAGAGCCTATATTATACAGTTGATTGGAGGGTTTCTATTTGCCGACAAGTCCAACACTCTCGTTCATCTCATGTTTCTTCCTCTGTTAGGCAACTTTGAGATAGCTGGACAGTATTCATGGGGTAGTGCATGTCTTGCATGGTTGTATAGGAAATTGTGTTGAGTTAGTAGTGCCAGTGTATTAGAGATAACCAATCCACTAGTACTACAACAAGTGTGGGCGTTCGATCGATTTTCTATTGTCGCACCACAAAATGAGCTACAGACCCCTGTTCATTATGTTGGACGCCCACTTAGTGCTCGATATGTTAAATTTATGTATAATTTAATCCAAATTTATATAATAATATATTTTAATTATATTATATAATGTACAGTTGGAATGGAGTTTTGACTGCATCTGAACAAAGTATAAATATTTTGATCATGTATCGTATTACATTTGATTGTCTTATGCCCAACCAAGTAAAACAATAATCATTTTTTTCTCAAATTAAAAAAATATATATTAACTGTAATTTCATTTATTAAATTTAATTTATTGTTTTATAAATTTCAAATCACTTGGACACCGTATACACCTGATATTATGGCCTTACTACTAGACTACTGCCATAATGGACAAGAGATTTGGTTGACTGTAAGCCCTCGCATATGTTTTCATATTGTAGAGTGACATTACCCAAATAGAGTGTTGAGACAATTTGGAATGTGACAAATGGTGTCGCTGTGATACACGCATGGAGTTACATCAGTTGGACTTACGAGGTAAGCATGATCATGATTGGCGACAACATCATGTAGCATTTATATCACTTTGGCGTGCACGTCGTGATCATTGTATCTCGGGCCACATAATAGACATGTCAGTTGTGTCTGATGATTACTCACACTGGTATGATTCAATCACAAGGAAAATACTATATACTTCGATTTTTTATTAATGCATTTTAGTTATAAAATATTTTTATTAAATTATTTTGATTATTTTTTTTCTTGCAGAATAACTTTGTTCGAGATGTACAACATTTTTCTGTGGAACAAAATGTGCCACAGTTAGGTTCTATGTGTGAGCAATACGTTACGAACATAACTGACATCATTCAACAAACTAGGAGGTTGATCGTTGCTGACACTGATCGAACCTGTGCTCATCGTAGACGTCGTCGACAACAAACTGCAGACATTCCACAGTAA

mRNA sequence

ATGCCGCCTACACTTCCTCTCTCACACCGTTCTTGTTGCGCCACCGCCTGCAGACCGCCGTCCGTCGACTTCGTAGCACAGTTTACAAAGTTTCCCCCTAATGTCGACAACATCACCATACAGAGACATGCAAGAGCCTATATTATACAGTTGATTGGAGGGTTTCTATTTGCCGACAAGTCCAACACTCTCGTTCATCTCATGTTTCTTCCTCTGTTAGGCAACTTTGAGATAGCTGGACAGTATTCATGGGACTACTGCCATAATGGACAAGAGATTTGGTTGACTAATAACTTTGTTCGAGATGTACAACATTTTTCTGTGGAACAAAATGTGCCACAGTTAGGTTCTATGTGTGAGCAATACGTTACGAACATAACTGACATCATTCAACAAACTAGGAGGTTGATCGTTGCTGACACTGATCGAACCTGTGCTCATCGTAGACGTCGTCGACAACAAACTGCAGACATTCCACAGTAA

Coding sequence (CDS)

ATGCCGCCTACACTTCCTCTCTCACACCGTTCTTGTTGCGCCACCGCCTGCAGACCGCCGTCCGTCGACTTCGTAGCACAGTTTACAAAGTTTCCCCCTAATGTCGACAACATCACCATACAGAGACATGCAAGAGCCTATATTATACAGTTGATTGGAGGGTTTCTATTTGCCGACAAGTCCAACACTCTCGTTCATCTCATGTTTCTTCCTCTGTTAGGCAACTTTGAGATAGCTGGACAGTATTCATGGGACTACTGCCATAATGGACAAGAGATTTGGTTGACTAATAACTTTGTTCGAGATGTACAACATTTTTCTGTGGAACAAAATGTGCCACAGTTAGGTTCTATGTGTGAGCAATACGTTACGAACATAACTGACATCATTCAACAAACTAGGAGGTTGATCGTTGCTGACACTGATCGAACCTGTGCTCATCGTAGACGTCGTCGACAACAAACTGCAGACATTCCACAGTAA

Protein sequence

MPPTLPLSHRSCCATACRPPSVDFVAQFTKFPPNVDNITIQRHARAYIIQLIGGFLFADKSNTLVHLMFLPLLGNFEIAGQYSWDYCHNGQEIWLTNNFVRDVQHFSVEQNVPQLGSMCEQYVTNITDIIQQTRRLIVADTDRTCAHRRRRRQQTADIPQ

Homology

[Close]

BLAST of Lag0016136 vs. NCBI nr
Match: XP_031742252.1 (serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-16
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 27  QFTKFPPNVDNITIQRHARAYIIQLIGGFLFADKSNTLVHLMFLPLLGNFEIAGQYSW 85
           QFT+ PP+ D +++QR+ARAYI+QLIGGFLFADKSNTLVH MFLPLL NF+ AG Y+W
Sbjct: 152 QFTELPPDADVVSVQRYARAYIMQLIGGFLFADKSNTLVHCMFLPLLINFDQAGTYAW 209

[Close]

BLAST of Lag0016136 vs. NCBI nr
Match: XP_031736055.1 (serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-16
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 27  QFTKFPPNVDNITIQRHARAYIIQLIGGFLFADKSNTLVHLMFLPLLGNFEIAGQYSW 85
           QFT+ PP+ D +++QR+ARAYI+QLIGGFLFADKSNTLVH MFLPLL NF+ AG Y+W
Sbjct: 81  QFTELPPDADVVSVQRYARAYIMQLIGGFLFADKSNTLVHCMFLPLLINFDQAGTYAW 138

[Close]

BLAST of Lag0016136 vs. NCBI nr
Match: XP_031736128.1 (serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-16
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 27  QFTKFPPNVDNITIQRHARAYIIQLIGGFLFADKSNTLVHLMFLPLLGNFEIAGQYSW 85
           QFT+ PP+ D +++QR+ARAYI+QLIGGFLFADKSNTLVH MFLPLL NF+ AG Y+W
Sbjct: 75  QFTELPPDADVVSVQRYARAYIMQLIGGFLFADKSNTLVHCMFLPLLINFDQAGTYAW 132

[Close]

BLAST of Lag0016136 vs. NCBI nr
Match: XP_031739461.1 (serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-16
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 27 QFTKFPPNVDNITIQRHARAYIIQLIGGFLFADKSNTLVHLMFLPLLGNFEIAGQYSW 85
          QFT+ PP+ D +++QR+ARAYI+QLIGGFLFADKSNTLVH MFLPLL NF+ AG Y+W
Sbjct: 14 QFTELPPDADVVSVQRYARAYIMQLIGGFLFADKSNTLVHCMFLPLLINFDQAGTYAW 71

[Close]

BLAST of Lag0016136 vs. NCBI nr
Match: XP_031739461.1 (serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus])

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-02
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 89  NGQEIWLTNNFVRDVQHFSVEQNVPQLGSMCEQYVTNITDIIQQTRRLIVADTDRTCAHR 148
           +G   +  NNFV DV+  S+E N      MC++ + +I +++Q+TRRL VADTDR    R
Sbjct: 284 DGAYCYCMNNFVEDVRRVSMENNFEIFSPMCDEVMGDIDNLVQRTRRLNVADTDR----R 343

Query: 149 RRRR 153
           R RR
Sbjct: 344 RIRR 343

HSP 2 Score: 94.7 bits (234), Expect = 7.5e-16
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 26  AQFTKFPPNVDNITIQRHARAYIIQLIGGFLFADKSNTLVHLMFLPLLGNFEIAGQYSW 85
           +QFTK P   D + I+R+ RAYI+QLIGGFLFADKSNTLVHLMFLPLL +FE AG+YSW
Sbjct: 466 SQFTKLPVEADEVMIKRYTRAYIMQLIGGFLFADKSNTLVHLMFLPLLKDFEEAGRYSW 524

[Close]

BLAST of Lag0016136 vs. ExPASy Swiss-Prot
Match: Q9LNG5 (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 28  FTKFPPNVDNITIQRHARAYIIQLIGGFLFADKSNTLVHLMFLPLLGNFEIAGQYSW 85
           F   P + D +T++ H RA+++ L+ GFL+ DKS   V L FLPLL +F+   + SW
Sbjct: 165 FRNLPADPDEVTLKCHTRAFVLALMSGFLYGDKSKHDVALTFLPLLRDFDEVAKLSW 221

[Close]

BLAST of Lag0016136 vs. ExPASy Swiss-Prot
Match: Q9SK32 (Protein MAIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=MAIL1 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 8.1e-05
Identity = 20/57 (35.09%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 28  FTKFPPNVDNITIQRHARAYIIQLIGGFLFADKSNTLVHLMFLPLLGNFEIAGQYSW 85
           F++ P +     ++ H RAY++ LIG  +FA      V + +LPL  +F+ AG+Y+W
Sbjct: 160 FSECPEDASFDVVKCHTRAYLLYLIGSTIFATTDGDKVSVKYLPLFEDFDQAGRYAW 216

[Close]

BLAST of Lag0016136 vs. ExPASy Swiss-Prot
Match: F4IFD0 (Protein MAIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=At2g04865 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 18/57 (31.58%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 28  FTKFPPNVDNITIQRHARAYIIQLIGGFLFADKSNTLVHLMFLPLLGNFEIAGQYSW 85
           F++ P +     ++R  RAY++ L+G  +F+  +   V +M+LPL  +F+ AG ++W
Sbjct: 158 FSECPDDASFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDDAGTFAW 214

The following BLAST results are available for this feature:

BLAST of Lag0016136 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742252.1	4.4e-16	72.41	serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]	[more]
XP_031736055.1	4.4e-16	72.41	serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]	[more]
XP_031736128.1	4.4e-16	72.41	serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]	[more]
XP_031739461.1	4.4e-16	72.41	serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]	[more]
XP_031739461.1	2.1e-02	43.75	serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]	[more]

BLAST of Lag0016136 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNG5	3.0e-07	42.11	Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana...	[more]
Q9SK32	8.1e-05	35.09	Protein MAIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=MAIL1 PE=1 SV=1	[more]
F4IFD0	1.8e-04	31.58	Protein MAIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=At2g04865 PE=1 SV=1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016136.1	Lag0016136.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance