Lag0015935 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015935
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr12: 29518431 .. 29519006 (+)
RNA-Seq Expression	Lag0015935
Synteny	Lag0015935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAGTGGGACAGTCTCTACCTCTCATCTCTTTTTCTCGCAAAGAAATCATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCTTATGTGGGGCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGACAAATTCATCTCTTCTTCGCAGCAACCAAACGAAACATCCAGTCCTGATGCGATGTCTGTTATGATGACTGATGTTGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTCGAAGAGAAATACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGGCAAGAGAAAGATTATTGCACAAGATCAATCACAACATTCCACTTCTATTGCTTCACTTTCCGTCCAGCAGCTCCAGGATATGATCATGAATTCCATTAGAGCTCAATATGGTGGACCGACTTAG

mRNA sequence

ATGCCCAGTGGGACAGTCTCTACCTCTCATCTCTTTTTCTCGCAAAGAAATCATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCTTATGTGGGGCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGACAAATTCATCTCTTCTTCGCAGCAACCAAACGAAACATCCAGTCCTGATGCGATGTCTGTTATGATGACTGATGTTGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTCGAAGAGAAATACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGGCAAGAGAAAGATTATTGCACAAGATCAATCACAACATTCCACTTCTATTGCTTCACTTTCCGTCCAGCAGCTCCAGGATATGATCATGAATTCCATTAGAGCTCAATATGGTGGACCGACTTAG

Coding sequence (CDS)

ATGCCCAGTGGGACAGTCTCTACCTCTCATCTCTTTTTCTCGCAAAGAAATCATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCTTATGTGGGGCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGACAAATTCATCTCTTCTTCGCAGCAACCAAACGAAACATCCAGTCCTGATGCGATGTCTGTTATGATGACTGATGTTGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTCGAAGAGAAATACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGGCAAGAGAAAGATTATTGCACAAGATCAATCACAACATTCCACTTCTATTGCTTCACTTTCCGTCCAGCAGCTCCAGGATATGATCATGAATTCCATTAGAGCTCAATATGGTGGACCGACTTAG

Protein sequence

MPSGTVSTSHLFFSQRNHDFRRSFFKDRCFKQLLCGAKETQHEDSQTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQTPAIKGKRKIIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGPT

Homology

[Close]

BLAST of Lag0015935 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-25
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 0


Query: 37  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMS 96
           ++E Q  +   P  +A  +  ++++  +  I   EN  +D+  S S++ N E   P+ MS
Sbjct: 24  SREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENPAMDEHNSLSERSNEEVPQPNIMS 83

Query: 97  VMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQTPAIKGKRK 156
           VM+TDV TSE+RMAE+EKK+NML+K VEE+  EIA L+N +ESRD AESS T  IK   K
Sbjct: 84  VMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIESRDAAESSHTHTIKNANK 143

Query: 157 ---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP 191
              I+ + Q Q+STSIASLSVQQLQ+MI NSI+ QYGGP
Sbjct: 144 GKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGP 182

[Close]

BLAST of Lag0015935 vs. NCBI nr
Match: KAA0050518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 8.1e-25
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 37  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMS 96
           ++E Q  +   P  +   +  ++++  +  I   EN  +D+  S S++ N E   P+ MS
Sbjct: 24  SREIQSSEDMPPFEVVKNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMS 83

Query: 97  VMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQTPAIKGKRK 156
           VM+TDV TSE+RMAE+EKK+NML+K VEEK  EIA L+N +ESRD AESS T  IK   K
Sbjct: 84  VMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALLKNHIESRDAAESSHTHTIKNANK 143

Query: 157 ---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP 191
              I+ + Q Q+STSIASLSVQQLQ+MI NSI+ QYGGP
Sbjct: 144 GKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGP 182

[Close]

BLAST of Lag0015935 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-24
Identity = 79/159 (49.69%), Postives = 109/159 (68.55%), Query Frame = 0


Query: 37  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETS-SPDAMS 96
           +++ Q  +   P  +AN +  ++++  +  I   EN  +D+  S S++ NE +  P+ MS
Sbjct: 24  SRQIQSSEDMPPFEVANNIWEQISKPPKGGIVIKENPAIDEHNSLSERSNEEAPQPNIMS 83

Query: 97  VMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQTPAIKGKRK 156
           VM+TDV TSE+RMAE+EKK+NML+K VEE+  EIASL+N +ESRD  ESS T  IK   K
Sbjct: 84  VMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAIESSHTHIIKNVNK 143

Query: 157 ---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP 191
              I+ + Q Q+STSIASLSVQQL +MI NSI+ QYGGP
Sbjct: 144 GKAIMQESQPQNSTSIASLSVQQLHEMIANSIKTQYGGP 182

[Close]

BLAST of Lag0015935 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-24
Identity = 75/150 (50.00%), Postives = 103/150 (68.67%), Query Frame = 0


Query: 46  QTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEE 105
           Q   IA  +L+++ ES +  I   EN + + + S+S +  + + PD MSVMM DV   E 
Sbjct: 35  QGSAIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ET 94

Query: 106 RMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQTPAI----KGKRKIIAQDQS 165
            MAE+E+KIN+L+K+V+E+  EIA+L+ QM++R+ AESSQTP +    KGK  +      
Sbjct: 95  AMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQ 154

Query: 166 QHSTSIASLSVQQLQDMIMNSIRAQYGGPT 192
           Q STS+ASLSVQQLQDMI NSIRAQYGGP+
Sbjct: 155 QQSTSVASLSVQQLQDMITNSIRAQYGGPS 183

[Close]

BLAST of Lag0015935 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-24
Identity = 75/150 (50.00%), Postives = 103/150 (68.67%), Query Frame = 0


Query: 46  QTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEE 105
           Q   IA  +L+++ ES +  I   EN + + + S+S +  + + PD MSVMM DV   E 
Sbjct: 35  QGSAIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ET 94

Query: 106 RMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQTPAI----KGKRKIIAQDQS 165
            MAE+E+KIN+L+K+V+E+  EIA+L+ QM++R+ AESSQTP +    KGK  +      
Sbjct: 95  AMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQ 154

Query: 166 QHSTSIASLSVQQLQDMIMNSIRAQYGGPT 192
           Q STS+ASLSVQQLQDMI NSIRAQYGGP+
Sbjct: 155 QQSTSVASLSVQQLQDMITNSIRAQYGGPS 183

The following BLAST results are available for this feature:

BLAST of Lag0015935 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047477.1	6.2e-25	50.31	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0050518.1	8.1e-25	50.31	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051994.1	1.1e-24	49.69	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp...	[more]
XP_031742199.1	1.1e-24	50.00	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	1.1e-24	50.00	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]

BLAST of Lag0015935 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015935.1	Lag0015935.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process