Lag0015932 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015932
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionauxin-responsive protein SAUR36-like
Locationchr12: 29488204 .. 29488725 (+)
RNA-Seq ExpressionLag0015932
SyntenyLag0015932
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAGCTCCGAGGCTTTAAGCTTCGAAAGCGTCTTATTCTATTCTCCAGGTGGCTCGGCCGAAGTATACGACCGATGTCGTCGTCGTCGTCATCGGCCAGATACCACAGGCTGACCCGGGAAAACCCACCGCCGGAATCCAAGTCTCTGTCGAAGATCCTTAGCTGGAGCCGCCAGCTGAGATTCCTCCGGCCAGCCGGGTCGGGCGAGGAGAAGCCTGACGAGGTGCCGAAGGGCCAGTTGGCGGTGTATGTTGGCGAAAGCGGAGGCGAATTCAACCGGGTTTTGGTGCCGGTGGTGTACTTCAAGCATAGGCTTTTCATTGAGCTGCTGAGGGAAGCGGAGGAGAAATTTGGGTTTGAACATGAAAAGGGGATTACTTTGCCTTGTGGGTATTCGGAGTTTGAGAGGATCCGGACCCGGATCCGGGATTGCCGGCGGAGCTGGAGGCGGCGGCGGAGCTCCGGGAGCTGCTGCTTGCCGGACGGTGAGGATGTGTGGAGGCTTGGTAGAACTTAA

mRNA sequence

ATGAGAAAGCTCCGAGGCTTTAAGCTTCGAAAGCGTCTTATTCTATTCTCCAGGTGGCTCGGCCGAAGTATACGACCGATGTCGTCGTCGTCGTCATCGGCCAGATACCACAGGCTGACCCGGGAAAACCCACCGCCGGAATCCAAGTCTCTGTCGAAGATCCTTAGCTGGAGCCGCCAGCTGAGATTCCTCCGGCCAGCCGGGTCGGGCGAGGAGAAGCCTGACGAGGTGCCGAAGGGCCAGTTGGCGGTGTATGTTGGCGAAAGCGGAGGCGAATTCAACCGGGTTTTGGTGCCGGTGGTGTACTTCAAGCATAGGCTTTTCATTGAGCTGCTGAGGGAAGCGGAGGAGAAATTTGGGTTTGAACATGAAAAGGGGATTACTTTGCCTTGTGGGTATTCGGAGTTTGAGAGGATCCGGACCCGGATCCGGGATTGCCGGCGGAGCTGGAGGCGGCGGCGGAGCTCCGGGAGCTGCTGCTTGCCGGACGGTGAGGATGTGTGGAGGCTTGGTAGAACTTAA

Coding sequence (CDS)

ATGAGAAAGCTCCGAGGCTTTAAGCTTCGAAAGCGTCTTATTCTATTCTCCAGGTGGCTCGGCCGAAGTATACGACCGATGTCGTCGTCGTCGTCATCGGCCAGATACCACAGGCTGACCCGGGAAAACCCACCGCCGGAATCCAAGTCTCTGTCGAAGATCCTTAGCTGGAGCCGCCAGCTGAGATTCCTCCGGCCAGCCGGGTCGGGCGAGGAGAAGCCTGACGAGGTGCCGAAGGGCCAGTTGGCGGTGTATGTTGGCGAAAGCGGAGGCGAATTCAACCGGGTTTTGGTGCCGGTGGTGTACTTCAAGCATAGGCTTTTCATTGAGCTGCTGAGGGAAGCGGAGGAGAAATTTGGGTTTGAACATGAAAAGGGGATTACTTTGCCTTGTGGGTATTCGGAGTTTGAGAGGATCCGGACCCGGATCCGGGATTGCCGGCGGAGCTGGAGGCGGCGGCGGAGCTCCGGGAGCTGCTGCTTGCCGGACGGTGAGGATGTGTGGAGGCTTGGTAGAACTTAA

Protein sequence

MRKLRGFKLRKRLILFSRWLGRSIRPMSSSSSSARYHRLTRENPPPESKSLSKILSWSRQLRFLRPAGSGEEKPDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEKFGFEHEKGITLPCGYSEFERIRTRIRDCRRSWRRRRSSGSCCLPDGEDVWRLGRT
Homology
BLAST of Lag0015932 vs. NCBI nr
Match: XP_038875651.1 (auxin-responsive protein SAUR36-like [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.7e-67
Identity = 132/167 (79.04%), Postives = 148/167 (88.62%), Query Frame = 0

Query: 1   MRKLRGFKLRKRLILFSRWLGRSIRPMSSSSSSARYHRLTRENPPPESKSLSKILSWSRQ 60
           MRK RG KLRKRLILFSRWLGR+IR  +SS SS RY+RL+++N   +SK  SKILSW RQ
Sbjct: 1   MRKFRGIKLRKRLILFSRWLGRNIR-STSSLSSVRYYRLSQDNSSKQSKLSSKILSWGRQ 60

Query: 61  LRFLRPAGSGEEKPDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEKFG 120
           L FLR AGSGEEKPD VPKGQLAVYVGESGGEF+RVLVPVVYFKH+LFIELLREAEE++G
Sbjct: 61  LSFLRQAGSGEEKPDPVPKGQLAVYVGESGGEFSRVLVPVVYFKHKLFIELLREAEEEYG 120

Query: 121 FEHEKGITLPCGYSEFERIRTRIRDCRRSWRRRRSSGSCCLPDGEDV 168
           F HEKGITLPCGYSEFERIRT+I++CRRSWRR RSSGSCC P+ +DV
Sbjct: 121 FRHEKGITLPCGYSEFERIRTKIQNCRRSWRRWRSSGSCCSPERDDV 166

BLAST of Lag0015932 vs. NCBI nr
Match: XP_008458152.1 (PREDICTED: auxin-responsive protein SAUR36-like [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-62
Identity = 129/172 (75.00%), Postives = 145/172 (84.30%), Query Frame = 0

Query: 1   MRKLRGFKLRKRLILFSRWLGRSIRPMSSSSSSARYHRLTRENPPPESKSLSKILSWSRQ 60
           M+KLR FKLRKRLILFSRW GR+IRPM +S SSARY+RL++ +   E K  SK+LSW RQ
Sbjct: 1   MKKLRRFKLRKRLILFSRWFGRNIRPM-TSLSSARYYRLSQGDSLKEPKLSSKLLSWGRQ 60

Query: 61  LRFLRPAGSGEEKPDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEKFG 120
           L FLR   S EEKPD VPKGQLAVYVGESGG  +RVLVPVVYFKH+LFIELLREAEE++G
Sbjct: 61  LSFLRQRVSSEEKPDLVPKGQLAVYVGESGGGLSRVLVPVVYFKHKLFIELLREAEEEYG 120

Query: 121 FEHEKGITLPCGYSEFERIRTRIRDCRRSWRRRRSSGSCCLPDGEDV--WRL 171
           F HEKGITLPCGYSEFERI+T+IRDC RSW R RSSGSCC P+G+DV  WRL
Sbjct: 121 FRHEKGITLPCGYSEFERIQTKIRDCGRSWPRWRSSGSCCSPEGDDVDLWRL 171

BLAST of Lag0015932 vs. NCBI nr
Match: KAE8646554.1 (hypothetical protein Csa_005160 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 2.8e-61
Identity = 132/174 (75.86%), Postives = 144/174 (82.76%), Query Frame = 0

Query: 1   MRKLRGFKLRKRLILFSRWLGRSIRPMSSSSSSARYHRLTRE-NPPPESKSLSKILSWSR 60
           M+KLR FKLRKRLILFSRW GR+IRPM +S SS RY+RLT+E N   E K  SK+LSW R
Sbjct: 1   MKKLRRFKLRKRLILFSRWFGRNIRPM-TSLSSVRYYRLTQEANSLKEPKLSSKLLSWGR 60

Query: 61  QLRFLRPAGSGEEKPDE-VPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEK 120
           QL FLR   S EEKPD  VPKGQLAVYVGESGG  +RVLVPVVYFKHRLFIELLREAEE+
Sbjct: 61  QLSFLRQRVSTEEKPDHLVPKGQLAVYVGESGGGLSRVLVPVVYFKHRLFIELLREAEEE 120

Query: 121 FGFEHEKGITLPCGYSEFERIRTRIRDCRRSWRRRRSSGSCCLPDGEDV--WRL 171
           +GF HEKGITLPCGYSEFERI+T+IRDCRRSW R RSSGSCC P+  DV  WRL
Sbjct: 121 YGFRHEKGITLPCGYSEFERIQTKIRDCRRSWARWRSSGSCCSPERGDVDLWRL 173

BLAST of Lag0015932 vs. NCBI nr
Match: XP_022959278.1 (auxin-responsive protein SAUR36-like [Cucurbita moschata])

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-58
Identity = 123/170 (72.35%), Postives = 139/170 (81.76%), Query Frame = 0

Query: 1   MRKLRGFKLRKRLILFSRWLGRSIRPMSSSSSSARYHRLTRENPPPESKSLSKILSWSRQ 60
           MRKLRGFKLRKRL+LFSRWL R+IRP      + RY+RL++E+  PE K  S++LSWSR 
Sbjct: 1   MRKLRGFKLRKRLVLFSRWLCRNIRP------ATRYYRLSQEDSSPELKLSSRLLSWSRG 60

Query: 61  LRFLRPAGSGEEKPDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEKFG 120
           L FLR A    EK + VPKGQLAVYVGESGGEF+RVLVPVVYFKHRLFIELLREAE+++G
Sbjct: 61  LSFLRRAEPVREKRNPVPKGQLAVYVGESGGEFSRVLVPVVYFKHRLFIELLREAEDEYG 120

Query: 121 FEHEKGITLPCGYSEFERIRTRIRDCRRSWRRRRSSGSCCLPDGEDVWRL 171
           FEH+KGIT PCGYSEFERI TRIRDCR  W   RSSGSCC P+ EDVWRL
Sbjct: 121 FEHKKGITFPCGYSEFERILTRIRDCRH-W---RSSGSCCSPEEEDVWRL 160

BLAST of Lag0015932 vs. NCBI nr
Match: KAG7013771.1 (Auxin-responsive protein SAUR36, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-58
Identity = 123/170 (72.35%), Postives = 138/170 (81.18%), Query Frame = 0

Query: 1   MRKLRGFKLRKRLILFSRWLGRSIRPMSSSSSSARYHRLTRENPPPESKSLSKILSWSRQ 60
           MRKLRGFKLRKRL+LFSRWL R+IRP      + RY+RL +E+  PE K  S++LSWSR 
Sbjct: 1   MRKLRGFKLRKRLVLFSRWLCRNIRP------ATRYYRLRQEDSSPELKLSSRLLSWSRG 60

Query: 61  LRFLRPAGSGEEKPDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEKFG 120
           L FLR A    EK + VPKGQLAVYVGESGGEF+RVLVPVVYFKHRLFIELLREAE+++G
Sbjct: 61  LSFLRRAEPVREKRNPVPKGQLAVYVGESGGEFSRVLVPVVYFKHRLFIELLREAEDEYG 120

Query: 121 FEHEKGITLPCGYSEFERIRTRIRDCRRSWRRRRSSGSCCLPDGEDVWRL 171
           FEH+KGIT PCGYSEFERI TRIRDCR  W   RSSGSCC P+ EDVWRL
Sbjct: 121 FEHKKGITFPCGYSEFERILTRIRDCRH-W---RSSGSCCSPEEEDVWRL 160

BLAST of Lag0015932 vs. ExPASy Swiss-Prot
Match: O22150 (Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.8e-24
Identity = 67/153 (43.79%), Postives = 98/153 (64.05%), Query Frame = 0

Query: 1   MRKLRGFKLRKRLILFSRWLGRSIRPMSSSSSSARYHRL-TRENPPPESKSLSKILSWSR 60
           MRK+ GF++ +R+   SRW+ R  R   S      Y+R+ + +      + L+K+ SW +
Sbjct: 1   MRKIIGFRIGRRV---SRWIFRKTRIQRSG-----YNRIHSTQQACMLMRPLAKLKSWGQ 60

Query: 61  QLR--FLRPAGS-------GEEKPDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIE 120
           +L+  F R +           +K D VP+G LA+YVG+  G+ +RVLVP+VYF H LF E
Sbjct: 61  RLKQSFRRRSTRRSAYIPVDHKKADPVPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGE 120

Query: 121 LLREAEEKFGFEHEKGITLPCGYSEFERIRTRI 144
           LLREAE+++GF HE GIT+PC YS+FER++TRI
Sbjct: 121 LLREAEKEYGFCHEGGITIPCLYSDFERVKTRI 145

BLAST of Lag0015932 vs. ExPASy Swiss-Prot
Match: Q9ZUZ3 (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 73  KPDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEKFGFEHEKGITLPCG 132
           K  +VPKG LA+ VG  G E  R +VPV+YF H LF++LL+EAE+++GF+ +  IT+PC 
Sbjct: 20  KVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCH 79

Query: 133 YSEFERIRTRI 144
             EF  ++  I
Sbjct: 80  VEEFRYVQALI 90

BLAST of Lag0015932 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-10
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 74  PDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEKFGFEHEKGITLPCGY 133
           P +VPKG   VYVGE+    +R +VP+ +  H  F  LL+ AEE+FGF+H+ G+T+PC  
Sbjct: 40  PLDVPKGHFPVYVGENR---SRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDE 99

Query: 134 SEFERIRTRIR 145
             F+ + + IR
Sbjct: 100 LVFQTLTSMIR 107

BLAST of Lag0015932 vs. ExPASy Swiss-Prot
Match: P33080 (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 67  AGSGEEKPDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEKFGFEHEK- 126
           A     K  EVPKG L VYVG+   +  R L+PV Y     F +LL +AEE+FG++H   
Sbjct: 15  ANQASSKSVEVPKGYLVVYVGD---KMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMG 74

Query: 127 GITLPCGYSEFERIRTRIRD 146
           G+T+PC   EF  + + + D
Sbjct: 75  GLTIPCKEDEFLTVTSHLND 91

BLAST of Lag0015932 vs. ExPASy Swiss-Prot
Match: P0DKL1 (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-09
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 74  PDEVPKGQLAVYVGESGGEFNRVLVPVVYFKHRLFIELLREAEEKFGFEHEKGITLPCGY 133
           P++VPKG   VYVGE     NR +VP+    H  F +LL+ +EE+FGF H+ GI +PC  
Sbjct: 36  PNDVPKGHFVVYVGE---RRNRYIVPISCLDHPTFQDLLQRSEEEFGFNHDMGIIIPCQE 95

Query: 134 SEF 137
            +F
Sbjct: 96  VDF 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875651.17.7e-6779.04auxin-responsive protein SAUR36-like [Benincasa hispida][more]
XP_008458152.11.2e-6275.00PREDICTED: auxin-responsive protein SAUR36-like [Cucumis melo][more]
KAE8646554.12.8e-6175.86hypothetical protein Csa_005160 [Cucumis sativus][more]
XP_022959278.11.3e-5872.35auxin-responsive protein SAUR36-like [Cucurbita moschata][more]
KAG7013771.12.3e-5872.35Auxin-responsive protein SAUR36, partial [Cucurbita argyrosperma subsp. argyrosp... [more]
Match NameE-valueIdentityDescription
O221503.8e-2443.79Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 S... [more]
Q9ZUZ35.1e-1347.89Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S... [more]
O656954.0e-1043.66Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S... [more]
P330801.5e-0941.25Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1[more]
P0DKL13.4e-0946.03Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 59..139
e-value: 6.1E-19
score: 68.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..50
NoneNo IPR availablePANTHERPTHR31374:SF304SMALL AUXIN-UP RNA-RELATEDcoord: 1..152
NoneNo IPR availablePANTHERPTHR31374AUXIN-INDUCED PROTEIN-LIKE-RELATEDcoord: 1..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015932.1Lag0015932.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin