Lag0015206 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015206
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionBromo domain-containing protein
Locationchr12: 8676524 .. 8677129 (-)
RNA-Seq ExpressionLag0015206
SyntenyLag0015206
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCATAATTCCTACGCCAACGTCAGTTCTGTGAAATCTCGCAGAGTTGTTCGCGCGGATCTGCCACCGAACGCGACGACGGTGAATGCGACGGAGCCGACTTCTCCGACGAAACCTCGCCGAGTCAGTGCTCGCGACTTGGCACCGAAGGCGACGATAGTGAAGAAGCCGCGTTCTCCGACAAAACGCCGAGTGATTAGCTCCCGTGATTTGGCTCCGGAGGCGAGGAAGTCGAGTTCTCCGGCACCGGTGACGATCACAACATCAATCGCGGCACTGCAAACTCCGCCGTCACCGAGAAGAGCTGCTCGCACAGCGATGCTGAAAGCTAGGTTCGCCGGTACGATCGCGAAAGCACAGAAGCAGCTTTTCGGCGATAGAAAGGAAATGATCGTTCCGATTCCGGCGACGACGAAGAAACCTACGACTGAAGAACTGAGAGAATTGGCCCGAAAAGCTTTAGAGACGATGGAGCGGACTGTTGAGTTGGACGACAGCCATAAATCGGTGAGGGATTTGCAGCGCCTCTGTGGCTGGCCGATTCCGTACGTTGGTGGGTTTCTAAACAGAATGCATTACCTTGGTTTATATTTGAAGAACTAG

mRNA sequence

ATGAAGCATAATTCCTACGCCAACGTCAGTTCTGTGAAATCTCGCAGAGTTGTTCGCGCGGATCTGCCACCGAACGCGACGACGGTGAATGCGACGGAGCCGACTTCTCCGACGAAACCTCGCCGAGTCAGTGCTCGCGACTTGGCACCGAAGGCGACGATAGTGAAGAAGCCGCGTTCTCCGACAAAACGCCGAGTGATTAGCTCCCGTGATTTGGCTCCGGAGGCGAGGAAGTCGAGTTCTCCGGCACCGGTGACGATCACAACATCAATCGCGGCACTGCAAACTCCGCCGTCACCGAGAAGAGCTGCTCGCACAGCGATGCTGAAAGCTAGGTTCGCCGGTACGATCGCGAAAGCACAGAAGCAGCTTTTCGGCGATAGAAAGGAAATGATCGTTCCGATTCCGGCGACGACGAAGAAACCTACGACTGAAGAACTGAGAGAATTGGCCCGAAAAGCTTTAGAGACGATGGAGCGGACTGTTGAGTTGGACGACAGCCATAAATCGGTGAGGGATTTGCAGCGCCTCTGTGGCTGGCCGATTCCGTACGTTGGTGGGTTTCTAAACAGAATGCATTACCTTGGTTTATATTTGAAGAACTAG

Coding sequence (CDS)

ATGAAGCATAATTCCTACGCCAACGTCAGTTCTGTGAAATCTCGCAGAGTTGTTCGCGCGGATCTGCCACCGAACGCGACGACGGTGAATGCGACGGAGCCGACTTCTCCGACGAAACCTCGCCGAGTCAGTGCTCGCGACTTGGCACCGAAGGCGACGATAGTGAAGAAGCCGCGTTCTCCGACAAAACGCCGAGTGATTAGCTCCCGTGATTTGGCTCCGGAGGCGAGGAAGTCGAGTTCTCCGGCACCGGTGACGATCACAACATCAATCGCGGCACTGCAAACTCCGCCGTCACCGAGAAGAGCTGCTCGCACAGCGATGCTGAAAGCTAGGTTCGCCGGTACGATCGCGAAAGCACAGAAGCAGCTTTTCGGCGATAGAAAGGAAATGATCGTTCCGATTCCGGCGACGACGAAGAAACCTACGACTGAAGAACTGAGAGAATTGGCCCGAAAAGCTTTAGAGACGATGGAGCGGACTGTTGAGTTGGACGACAGCCATAAATCGGTGAGGGATTTGCAGCGCCTCTGTGGCTGGCCGATTCCGTACGTTGGTGGGTTTCTAAACAGAATGCATTACCTTGGTTTATATTTGAAGAACTAG

Protein sequence

MKHNSYANVSSVKSRRVVRADLPPNATTVNATEPTSPTKPRRVSARDLAPKATIVKKPRSPTKRRVISSRDLAPEARKSSSPAPVTITTSIAALQTPPSPRRAARTAMLKARFAGTIAKAQKQLFGDRKEMIVPIPATTKKPTTEELRELARKALETMERTVELDDSHKSVRDLQRLCGWPIPYVGGFLNRMHYLGLYLKN
Homology
BLAST of Lag0015206 vs. NCBI nr
Match: KAA0061663.1 (transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-18
Identity = 69/176 (39.20%), Postives = 89/176 (50.57%), Query Frame = 0

Query: 78  KSSSPAPVTITTSIAALQTPPSPRRAARTAMLKARFAGTIAKAQKQL------------- 137
           K + P P   TT + A++   +     R +MLK RFAGTI KAQ+QL             
Sbjct: 23  KKAKPTPTMGTTPLTAIRY--NDNHNNRVSMLKRRFAGTILKAQQQLSERERIMCNVEKK 82

Query: 138 ------------FGDRKEMIVPIPATTKKPT---------------------------TE 197
                         +R+E         K+PT                           TE
Sbjct: 83  QPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNEELRKVVQRAFSPTPIPSSTE 142

Query: 198 ELRELARKALETMERTVELDDSHKSVRDLQRLCGWPIPYVGGFLNRMHYLGLYLKN 202
           E+R+ AR+ALE +ER+V+++DSHKSV+DL+RLCGWPIPYVGGF NRM Y GLYLKN
Sbjct: 143 EIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLKN 196

BLAST of Lag0015206 vs. NCBI nr
Match: KAG6571342.1 (hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-15
Identity = 71/196 (36.22%), Postives = 94/196 (47.96%), Query Frame = 0

Query: 34  PTSPTKPRRVSARDLAPKATIVKKPRSPTKRRVISSRDLAPEARKSSSPAPVTITTSIAA 93
           P      R  S +  A K ++   P S TK + ++   + P    SSS            
Sbjct: 5   PKHSLSVRASSLKSKAKKPSLSLPPTSLTKAKTLAPTTIVPRPTPSSSSG---------- 64

Query: 94  LQTPPSPRRAARTAMLKARFAGTIAKAQKQLFGDRKEM--------------------IV 153
                      R  +LK +FAGTI KAQ+ L  +RK++                    +V
Sbjct: 65  --------EDNRAKILKKKFAGTIWKAQRHLSKNRKKVRSEKRREADGKGSEAVDDRRVV 124

Query: 154 PIPA--------TTKKPTTEELRELARKALETMERTVELDDSHKSVRDLQRLCGWPIPYV 202
           P  A        T  K   EE+R  AR+ LE +ER V +DDSH S+R+ +RLCG+PIPYV
Sbjct: 125 PPLAPSLEDDEITMLKVRREEMRAAARRDLEEVERRVVVDDSHASLREYERLCGFPIPYV 182

BLAST of Lag0015206 vs. NCBI nr
Match: PQQ06297.1 (hypothetical protein Pyn_02267 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-05
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 99  SPRRAARTAMLKARFAGTIAKAQKQL-------FGDRKEMIVPIPATTKKPTTEEL---- 158
           SPRRAAR AMLKARFAGTI KA++++        G+ ++ I    A       E +    
Sbjct: 61  SPRRAARVAMLKARFAGTIFKAKQEVLYSGSNGLGNTEDEIKKFRAAEMMKANEYIKEQR 120

Query: 159 ---RELARKALETMERTVELDDSHKSVRDLQRL 178
              RE AR ALE MER V +DD+ K++RD + L
Sbjct: 121 QRDREAARLALEEMERNVVIDDNFKTMRDFEML 153

BLAST of Lag0015206 vs. NCBI nr
Match: RZS19084.1 (hypothetical protein BHM03_00051432 [Ensete ventricosum])

HSP 1 Score: 58.2 bits (139), Expect = 9.8e-05
Identity = 56/160 (35.00%), Postives = 78/160 (48.75%), Query Frame = 0

Query: 79  SSSPAPVTITT--SIAALQTPPSPRRAARTAMLKARFAGTIAKAQKQLFG---------- 138
           S  P+P+T  T   +   +   SP +A R AMLK+RFA TI KAQ+Q  G          
Sbjct: 455 SHPPSPLTAATEADLGPCEEQLSPSKALRAAMLKSRFADTILKAQQQSLGVKIDPAKLQR 514

Query: 139 ------DRKEMIVPIPATTK-KPTTEELRELARKALETMERTVELDDSHKSVRDLQRLCG 198
                  R++    I A  K +      RE AR AL+ ME+TVE+D+SH  ++DL+ L G
Sbjct: 515 EREKLEKRQQEAAEIAAKMKAEAELTRQREAARLALQKMEKTVEIDNSH-ILKDLENL-G 574

Query: 199 WPIP--------YVG----------GFLNRMHYLGLYLKN 202
            P+P         VG          G +N +  LGL++KN
Sbjct: 575 CPLPRHFDRTDETVGKFMHELEMHSGVVNPLEQLGLFMKN 612

BLAST of Lag0015206 vs. NCBI nr
Match: RWW19087.1 (hypothetical protein GW17_00016874 [Ensete ventricosum])

HSP 1 Score: 58.2 bits (139), Expect = 9.8e-05
Identity = 56/160 (35.00%), Postives = 78/160 (48.75%), Query Frame = 0

Query: 79  SSSPAPVTITT--SIAALQTPPSPRRAARTAMLKARFAGTIAKAQKQLFG---------- 138
           S  P+P+T  T   +   +   SP +A R AMLK+RFA TI KAQ+Q  G          
Sbjct: 455 SHPPSPLTAATEADLGPCEEQLSPSKALRAAMLKSRFADTILKAQQQSLGVKIDPAKLQR 514

Query: 139 ------DRKEMIVPIPATTK-KPTTEELRELARKALETMERTVELDDSHKSVRDLQRLCG 198
                  R++    I A  K +      RE AR AL+ ME+TVE+D+SH  ++DL+ L G
Sbjct: 515 EREKLEKRQQEAAEIAAKMKAEAELTRQREAARLALQKMEKTVEIDNSH-ILKDLENL-G 574

Query: 199 WPIP--------YVG----------GFLNRMHYLGLYLKN 202
            P+P         VG          G +N +  LGL++KN
Sbjct: 575 CPLPRHFDRTDETVGKFMHELEMHSGVVNPLEQLGLFMKN 612

BLAST of Lag0015206 vs. ExPASy TrEMBL
Match: A0A5D3DC97 (Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00060 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.8e-19
Identity = 69/176 (39.20%), Postives = 89/176 (50.57%), Query Frame = 0

Query: 78  KSSSPAPVTITTSIAALQTPPSPRRAARTAMLKARFAGTIAKAQKQL------------- 137
           K + P P   TT + A++   +     R +MLK RFAGTI KAQ+QL             
Sbjct: 23  KKAKPTPTMGTTPLTAIRY--NDNHNNRVSMLKRRFAGTILKAQQQLSERERIMCNVEKK 82

Query: 138 ------------FGDRKEMIVPIPATTKKPT---------------------------TE 197
                         +R+E         K+PT                           TE
Sbjct: 83  QPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNEELRKVVQRAFSPTPIPSSTE 142

Query: 198 ELRELARKALETMERTVELDDSHKSVRDLQRLCGWPIPYVGGFLNRMHYLGLYLKN 202
           E+R+ AR+ALE +ER+V+++DSHKSV+DL+RLCGWPIPYVGGF NRM Y GLYLKN
Sbjct: 143 EIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLKN 196

BLAST of Lag0015206 vs. ExPASy TrEMBL
Match: A0A0A0KGL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-17
Identity = 71/187 (37.97%), Postives = 89/187 (47.59%), Query Frame = 0

Query: 78  KSSSPAPVTITTSIAALQTPPSPRRAARTAMLKARFAGTIAKAQKQLFGDRK-----EMI 137
           K + P P   TT + A+       +  R +MLK+RFA TI KAQ+QL   ++     E  
Sbjct: 30  KKAKPTPTMETTPLTAITFDD---KHYRVSMLKSRFASTILKAQQQLSESKRKVCNVEKK 89

Query: 138 VPIPATT----------------KKPT--------------------------------- 197
            P PA T                KKPT                                 
Sbjct: 90  PPTPALTPMEERREATREASWRNKKPTATATATATTTPTTNSNEEPTREVVQRALWRKMK 149

Query: 198 ---------TEELRELARKALETMERTVELDDSHKSVRDLQRLCGWPIPYVGGFLNRMHY 202
                    TEE+R  AR+ALE +ER+V+++DSHKSV+DL+RLCGWPIP VGGF NRM Y
Sbjct: 150 LPPTPILTSTEEIRRAARQALEDLERSVDVEDSHKSVKDLERLCGWPIPSVGGFKNRMEY 209

BLAST of Lag0015206 vs. ExPASy TrEMBL
Match: A0A314YIV3 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_02267 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 99  SPRRAARTAMLKARFAGTIAKAQKQL-------FGDRKEMIVPIPATTKKPTTEEL---- 158
           SPRRAAR AMLKARFAGTI KA++++        G+ ++ I    A       E +    
Sbjct: 61  SPRRAARVAMLKARFAGTIFKAKQEVLYSGSNGLGNTEDEIKKFRAAEMMKANEYIKEQR 120

Query: 159 ---RELARKALETMERTVELDDSHKSVRDLQRL 178
              RE AR ALE MER V +DD+ K++RD + L
Sbjct: 121 QRDREAARLALEEMERNVVIDDNFKTMRDFEML 153

BLAST of Lag0015206 vs. ExPASy TrEMBL
Match: A0A444F921 (Bromo domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00016874 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-05
Identity = 56/160 (35.00%), Postives = 78/160 (48.75%), Query Frame = 0

Query: 79  SSSPAPVTITT--SIAALQTPPSPRRAARTAMLKARFAGTIAKAQKQLFG---------- 138
           S  P+P+T  T   +   +   SP +A R AMLK+RFA TI KAQ+Q  G          
Sbjct: 455 SHPPSPLTAATEADLGPCEEQLSPSKALRAAMLKSRFADTILKAQQQSLGVKIDPAKLQR 514

Query: 139 ------DRKEMIVPIPATTK-KPTTEELRELARKALETMERTVELDDSHKSVRDLQRLCG 198
                  R++    I A  K +      RE AR AL+ ME+TVE+D+SH  ++DL+ L G
Sbjct: 515 EREKLEKRQQEAAEIAAKMKAEAELTRQREAARLALQKMEKTVEIDNSH-ILKDLENL-G 574

Query: 199 WPIP--------YVG----------GFLNRMHYLGLYLKN 202
            P+P         VG          G +N +  LGL++KN
Sbjct: 575 CPLPRHFDRTDETVGKFMHELEMHSGVVNPLEQLGLFMKN 612

BLAST of Lag0015206 vs. ExPASy TrEMBL
Match: A0A314XJ27 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07298 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.2e-05
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 0

Query: 99  SPRRAARTAMLKARFAGTIAKAQKQLFGDRKEMIVPIPATTKKPTTEEL----------- 158
           SPRRAAR AMLKARFAGTI KA++++       +       KK    E+           
Sbjct: 59  SPRRAARVAMLKARFAGTIFKAKQEVLYSGSNGLENTEDEIKKFRAAEMMKANEYIKEQW 118

Query: 159 ---RELARKALETMERTVELDDSHKSVRDLQRL 178
              RE AR ALE MER V +DD+ K++RD + L
Sbjct: 119 QRDREAARLALEEMERNVVIDDNFKTMRDFEML 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0061663.12.0e-1839.20transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 tran... [more]
KAG6571342.12.7e-1536.22hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sorori... [more]
PQQ06297.13.4e-0544.09hypothetical protein Pyn_02267 [Prunus yedoensis var. nudiflora][more]
RZS19084.19.8e-0535.00hypothetical protein BHM03_00051432 [Ensete ventricosum][more]
RWW19087.19.8e-0535.00hypothetical protein GW17_00016874 [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DC979.8e-1939.20Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0KGL24.1e-1737.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1[more]
A0A314YIV31.6e-0544.09Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_022... [more]
A0A444F9214.7e-0535.00Bromo domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00016874 P... [more]
A0A314XJ276.2e-0543.01Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_072... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..39
NoneNo IPR availablePANTHERPTHR46136TRANSCRIPTION FACTOR GTE8coord: 57..131
coord: 142..179
NoneNo IPR availablePANTHERPTHR46136:SF19TRANSCRIPTION FACTOR GTE11coord: 57..131
coord: 142..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015206.1Lag0015206.1mRNA