Lag0014831 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014831
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr12: 5067188 .. 5067649 (+)
RNA-Seq Expression	Lag0014831
Synteny	Lag0014831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCCGTTCCACGGCGGACCTTTCTGCCGACGCGCCCTCTCAACGACGCGCTCCCTGTCTCGCACCCGGACTCCGCTCAAACCCTACGCCGAAGGCTCTCCTCGATTTCCTTCAAGATCCAGCCGATTTCTTCGCCGGTCTCTTCCTGGCCGTTTCGTAGATCTAAATCGCTGTCGTCTATGCGCGATTACACCGGCAGTTCGCTCCGGAAGTGGTGGGATTGGGGATGGTCCTGGATCCTCTCCCGCAAGGCTGCCTTCGCTCGAGATCTGGAGATGAACGATGAAGAAACTAAAGCTCTTGGATCTAATTGCAGAGGTAGTTTGAGGCATCTTTTCTATAAGGTTAGGTCTGAGTTCCGGAAGCTTATTCGCTCCGATCGAGTCGGTCTTCCTCAAACTTTCAAATACGATTCGGTTAATTACTCGAAGAATTTCGACGACGGAGTGAAATCTTAG

mRNA sequence

ATGACTTCCGTTCCACGGCGGACCTTTCTGCCGACGCGCCCTCTCAACGACGCGCTCCCTGTCTCGCACCCGGACTCCGCTCAAACCCTACGCCGAAGGCTCTCCTCGATTTCCTTCAAGATCCAGCCGATTTCTTCGCCGGTCTCTTCCTGGCCGTTTCGTAGATCTAAATCGCTGTCGTCTATGCGCGATTACACCGGCAGTTCGCTCCGGAAGTGGTGGGATTGGGGATGGTCCTGGATCCTCTCCCGCAAGGCTGCCTTCGCTCGAGATCTGGAGATGAACGATGAAGAAACTAAAGCTCTTGGATCTAATTGCAGAGGTAGTTTGAGGCATCTTTTCTATAAGGTTAGGTCTGAGTTCCGGAAGCTTATTCGCTCCGATCGAGTCGGTCTTCCTCAAACTTTCAAATACGATTCGGTTAATTACTCGAAGAATTTCGACGACGGAGTGAAATCTTAG

Coding sequence (CDS)

ATGACTTCCGTTCCACGGCGGACCTTTCTGCCGACGCGCCCTCTCAACGACGCGCTCCCTGTCTCGCACCCGGACTCCGCTCAAACCCTACGCCGAAGGCTCTCCTCGATTTCCTTCAAGATCCAGCCGATTTCTTCGCCGGTCTCTTCCTGGCCGTTTCGTAGATCTAAATCGCTGTCGTCTATGCGCGATTACACCGGCAGTTCGCTCCGGAAGTGGTGGGATTGGGGATGGTCCTGGATCCTCTCCCGCAAGGCTGCCTTCGCTCGAGATCTGGAGATGAACGATGAAGAAACTAAAGCTCTTGGATCTAATTGCAGAGGTAGTTTGAGGCATCTTTTCTATAAGGTTAGGTCTGAGTTCCGGAAGCTTATTCGCTCCGATCGAGTCGGTCTTCCTCAAACTTTCAAATACGATTCGGTTAATTACTCGAAGAATTTCGACGACGGAGTGAAATCTTAG

Protein sequence

MTSVPRRTFLPTRPLNDALPVSHPDSAQTLRRRLSSISFKIQPISSPVSSWPFRRSKSLSSMRDYTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSNCRGSLRHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS

Homology

[Close]

BLAST of Lag0014831 vs. NCBI nr
Match: XP_038888269.1 (uncharacterized protein LOC120078122 [Benincasa hispida])

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 142/153 (92.81%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MTSVPRRTFLPTRPLNDALPVSHPDSAQTLRRRLSSISFKIQPISSPVSSWPFRRSKSLS 60
           M S+PRR+FLPTRPLNDALPVS PDSAQT+RRRLSSISFKIQPISSPV SWPFRRSKS+S
Sbjct: 1   MASIPRRSFLPTRPLNDALPVSQPDSAQTIRRRLSSISFKIQPISSPVVSWPFRRSKSVS 60

Query: 61  SMRDYTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSNCRGSLRHLFYKVRSE 120
           SMRD+TGSSLRKWWDWGWSWILSRKAAF RDLEMNDEETKALGSNCRGS RHLFYKVRSE
Sbjct: 61  SMRDFTGSSLRKWWDWGWSWILSRKAAFTRDLEMNDEETKALGSNCRGSFRHLFYKVRSE 120

Query: 121 FRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS 154
           FRKLIRSDRVGLPQTFKYDSVNYSKNFDDGV+S
Sbjct: 121 FRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVRS 153

[Close]

BLAST of Lag0014831 vs. NCBI nr
Match: XP_022135907.1 (uncharacterized protein LOC111007745 [Momordica charantia])

HSP 1 Score: 291.6 bits (745), Expect = 4.0e-75
Identity = 138/153 (90.20%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MTSVPRRTFLPTRPLNDALPVSHPDSAQTLRRRLSSISFKIQPISSPVSSWPFRRSKSLS 60
           MT VPRR+FLPTRPLNDALPVSHPDS QTLRRRLSSISFKIQPISSPV+SWPFRRSKS+S
Sbjct: 1   MTFVPRRSFLPTRPLNDALPVSHPDSDQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVS 60

Query: 61  SMRDYTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSNCRGSLRHLFYKVRSE 120
           SMR+Y+GSSLRKWWDWGWSWILSRKA FA+DLE+ND+ETK+LGSNCRGS RHLFYKVRSE
Sbjct: 61  SMREYSGSSLRKWWDWGWSWILSRKAPFAKDLEINDDETKSLGSNCRGSWRHLFYKVRSE 120

Query: 121 FRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS 154
           FRKL+RSDRVGLPQTFKYDSVNYSKNFDDGVK+
Sbjct: 121 FRKLMRSDRVGLPQTFKYDSVNYSKNFDDGVKT 153

[Close]

BLAST of Lag0014831 vs. NCBI nr
Match: KAG7022775.1 (hypothetical protein SDJN02_16511, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.4 bits (742), Expect = 8.9e-75
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MTSVPRRTFLPTRPLNDALPVSHPDSAQTLRRRLSSISFKIQPISSPVSSWPFRRSKSLS 60
           MTS+PRR+FLPTRPLNDALPVS PDS QTLRRRLSSISFKIQPISSPV+SW F RSKS+S
Sbjct: 1   MTSIPRRSFLPTRPLNDALPVSQPDSTQTLRRRLSSISFKIQPISSPVTSWSFHRSKSVS 60

Query: 61  SMRDYTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSNCRGSLRHLFYKVRSE 120
           S+RD+TG SLRKWWDWGWSWILSRKAAFARDLEMNDEETK+L SNCRGS RHLFYKVRSE
Sbjct: 61  SLRDHTGKSLRKWWDWGWSWILSRKAAFARDLEMNDEETKSLRSNCRGSFRHLFYKVRSE 120

Query: 121 FRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS 154
           FRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS
Sbjct: 121 FRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS 153

[Close]

BLAST of Lag0014831 vs. NCBI nr
Match: XP_022928235.1 (uncharacterized protein LOC111435129 [Cucurbita moschata])

HSP 1 Score: 287.3 bits (734), Expect = 7.5e-74
Identity = 136/153 (88.89%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MTSVPRRTFLPTRPLNDALPVSHPDSAQTLRRRLSSISFKIQPISSPVSSWPFRRSKSLS 60
           MTS+PRR+FLPTRPLNDALPVS PDS QTLRRRLSSISFKIQPISSPV+SW F RSKS+S
Sbjct: 1   MTSIPRRSFLPTRPLNDALPVSQPDSTQTLRRRLSSISFKIQPISSPVTSWSFHRSKSVS 60

Query: 61  SMRDYTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSNCRGSLRHLFYKVRSE 120
           S+RD+TG SLRKWWDWGWSWILSRKAAFARDLEMNDEETK+L SNCRGS RHLFYKVRSE
Sbjct: 61  SLRDHTGKSLRKWWDWGWSWILSRKAAFARDLEMNDEETKSLRSNCRGSFRHLFYKVRSE 120

Query: 121 FRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS 154
           FRKLIRSDRVGLPQTFKYDSVNYSKNFDDG+++
Sbjct: 121 FRKLIRSDRVGLPQTFKYDSVNYSKNFDDGIQT 153

[Close]

BLAST of Lag0014831 vs. NCBI nr
Match: KAA0059605.1 (hypothetical protein E6C27_scaffold54G00270 [Cucumis melo var. makuwa] >TYK08138.1 hypothetical protein E5676_scaffold886G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-64
Identity = 134/163 (82.21%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MTSVPRRTFLPTRPLNDALPVSHPD--SAQTLRRRLSSISFKIQPISSPVSSW-PFRRSK 60
           MTS+P R FLPT PLNDALP+S PD  S+QTLRRRLSSISFKI PISSP++SW  FRRSK
Sbjct: 1   MTSIPARRFLPTPPLNDALPLSQPDQYSSQTLRRRLSSISFKIHPISSPLTSWSSFRRSK 60

Query: 61  SLSSMRDYTGSSLRKWWDWGWSWILSRKAAFARDLEMN----DEETKALGSN--CRGS-- 120
           S+SSMRD+T +SLRKWWDWGWSWILSRK+AFARDLEMN    DEETKALGSN  CRGS  
Sbjct: 61  SVSSMRDFTRTSLRKWWDWGWSWILSRKSAFARDLEMNDNNDDEETKALGSNYCCRGSFK 120

Query: 121 LRHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK 153
            +HLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK
Sbjct: 121 FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK 163

The following BLAST results are available for this feature:

BLAST of Lag0014831 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888269.1	5.6e-77	92.81	uncharacterized protein LOC120078122 [Benincasa hispida]	[more]
XP_022135907.1	4.0e-75	90.20	uncharacterized protein LOC111007745 [Momordica charantia]	[more]
KAG7022775.1	8.9e-75	90.85	hypothetical protein SDJN02_16511, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022928235.1	7.5e-74	88.89	uncharacterized protein LOC111435129 [Cucurbita moschata]	[more]
KAA0059605.1	1.4e-64	82.21	hypothetical protein E6C27_scaffold54G00270 [Cucumis melo var. makuwa] >TYK08138...	[more]

BLAST of Lag0014831 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35714	OS02G0715300 PROTEIN	coord: 9..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014831.1	Lag0014831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane