Lag0014799 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014799
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AP complex subunit sigma
Location	chr12: 4754302 .. 4756573 (-)
RNA-Seq Expression	Lag0014799
Synteny	Lag0014799

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATATATTTACAGCGGAACGACGGAGGAGAAAGTGTCCTTTGATCGGTGAGATCGAATTTTTGGTTGAGGATTTGGATTTGAAACTTTTGATTCCTGAAAGTTCAGAGCAAAATGGTTAGTGATTTGATTTGTTTTGATTCATTTCTAGATTTTGATTGTTTCAAGGTTGAAATTGCTATGTTCATTGTGTTATAGTCTTTCTCATCGTGGATCTGCTTTGCTCTCTCTTTGGGATGGTTTAGTTGGTTTCTCTTATACTGCTGAATTTTTGTTTCGTTCTGGAATCGATTTGGAGTGGTTTCGGTGTTGTTGAGATTCAGATCTTTGCTTAGCTGACATCCGAATTGCGCAATTTCTGTTTCTATTTGTTGTTTGATTCGTCGCGCTCGTTCCTTTATGTGGCTGCATAGCATCTGGGATTTCAGGAATAGTTCTTTAATCTTGGGGTTTGGATTTAGTCTTGCTAGGTGGTTTGGGATTGTAATCGTGGTCCGTCCTAACTCCCTCATTTGGATGTGCCGCTCTAGGGCGGAGCTTAGGAACTATTTCTTCTCTGTTGAGCTAATTATTGAGTTCAAATTGGAGGAGTGGCAGTTCTTCTATTTCTTTTGTTCACAAGCTTGTAAATATGCTTTAGCCACGAGTTCCTGAACCAATAAATTCTATTCTTACTCTCTTCCCCTGTTCAACCTTTAGTACAGAGTTTATATTTTCAACTTTTTGGCCCCCCACAAAAGAAAAGACTGCCTAATCTATATTTTACATGGTGTTCTAACTGATGTTGTGGGTGTCAATTTCCAGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCGAAGGTAGGTCAGCTATTTGCCTCATTCTGTAATTTAATTCTAATAGCTTCTTCTAATTTCCAACCAAAGAGAATTTTTTCAAAAGCTTGTTGGCCTTCCATGTCACATCTGTAAAGCTTGTTGCTTTAATAAGTCTTACTTCCCCTTGGATCATTGGACTCACCACATTATGGCGTGTGCTTGTGTCTGCTCATGTTCTTTAAAAAGATTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAATTTTGTGGAATGGAGGGGACTCAAAGCTGTGTATAAAAGGTACGCCATGGTATATTAATGTGTCCTGCAATCCGAGTATTTATTTTGCCCATGTTTCCCATTCTAAAGATGATTGATGATTCTGTTGGACGTGCAATGCAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTTGAAATCATTCATCATTATGTTGAGATTTTGGACCGTTACTTTGGCAGTGTAAGTGAATATTTTAGTTCATGAGGTGTTTGAGGCTAATCTTTTTTGCACCATCTCTTTGTTAGACTGTCTAATCTGACATCTATTTTCTTTATTATTTGTATATGTTTGTAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTATTATTCACTTGCTTAGATGCAACTTTGATACATTGTAAACTTATCTTGAGGATATGTTCACATCCTTGATCTGTGTTGACTTGTAATAGAGTCTGTTGTTATTTTATCAAGGAGGTGCTTTTGAACCCTCCTTTTCGGGATAAAGGGAGAGTCTTTCGACTTGGTTTTTCACTGTTTTGTGGAAAATTTAGTTGGAGAGGAACAATAGGATTTCTATAGGGGTTGAGAGATTTTGGAAGGAGCTTTGAGAGTTGGCTAGGTTTACTTCTTTATGAGCATCCGTCAATCAAGCTCTTTTTAATTACTTGTTTGATCACATTCTCTTGGATTGAGGTTCGTTCTTCTAGCTAGTGTTGGGTCCCCTTTTTTGTGGTGCCCTTCTACATTCTTTCAATTTTCTGGATGAAAGCTCGGTTTCTTATCCCCCCAAAAAAATGCACCTTTGATGCATTGTTTACTTTTTTTAACATTGAAGGCCTACTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGTACTGTCTCCTTATTTTTGCAGTACCTTCGTTATGATTTATTGATTTCAGTCTAGCTGATATGGTAATTGATATTCCACTGTAGGATTCGTTGGTGGAGACTGCAAAAGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAG

mRNA sequence

ATGAAATATATTTACAGCGGAACGACGGAGGAGAAAGTGTCCTTTGATCGTCTTTCTCATCGTGGATCTGCTTTGCTCTCTCTTTGGGATGGTTTAGTTGGTTTCTCTTATACTGCTGAATTTTTGTTTCGTTCTGGAATCGATTTGGAGTGGTTTCGGAATAGTTCTTTAATCTTGGGGTTTGGATTTAGTCTTGCTAGGTGGTTTGGGATTGTAATCGTGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCGAAGATTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAATTTTGTGGAATGGAGGGGACTCAAAGCTGTGTATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTTGAAATCATTCATCATTATGTTGAGATTTTGGACCGTTACTTTGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTACTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAAGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAG

Coding sequence (CDS)

ATGAAATATATTTACAGCGGAACGACGGAGGAGAAAGTGTCCTTTGATCGTCTTTCTCATCGTGGATCTGCTTTGCTCTCTCTTTGGGATGGTTTAGTTGGTTTCTCTTATACTGCTGAATTTTTGTTTCGTTCTGGAATCGATTTGGAGTGGTTTCGGAATAGTTCTTTAATCTTGGGGTTTGGATTTAGTCTTGCTAGGTGGTTTGGGATTGTAATCGTGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCGAAGATTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAATTTTGTGGAATGGAGGGGACTCAAAGCTGTGTATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTTGAAATCATTCATCATTATGTTGAGATTTTGGACCGTTACTTTGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTACTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAAGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAG

Protein sequence

MKYIYSGTTEEKVSFDRLSHRGSALLSLWDGLVGFSYTAEFLFRSGIDLEWFRNSSLILGFGFSLARWFGIVIVIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

[Close]

BLAST of Lag0014799 vs. NCBI nr
Match: XP_038888262.1 (AP-1 complex subunit sigma-2 [Benincasa hispida])

HSP 1 Score: 315.5 bits (807), Expect = 4.0e-82
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPYSQKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. NCBI nr
Match: XP_008462009.1 (PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo])

HSP 1 Score: 315.1 bits (806), Expect = 5.2e-82
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPYSQKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. NCBI nr
Match: KAA0050549.1 (AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 5.2e-82
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPYSQKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 78  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 137

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 138 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 197

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 198 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of Lag0014799 vs. NCBI nr
Match: XP_022135730.1 (AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex subunit sigma-2 [Momordica charantia])

HSP 1 Score: 313.9 bits (803), Expect = 1.1e-81
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPYSQKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQ+DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. NCBI nr
Match: XP_004144562.1 (AP-1 complex subunit sigma-1 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 3.3e-81
Identity = 156/161 (96.89%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPY+QKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 6.6e-80
Identity = 146/160 (91.25%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSK+IRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 234
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Lag0014799 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-79
Identity = 145/161 (90.06%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSK+IRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 9.2e-58
Identity = 102/144 (70.83%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 73  IVIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVY 132
           +  HF+LL+SRQGK RLTKWYSP++ KE+S+  RE+  M+LNR PKLCNF+EW+  K ++
Sbjct: 1   MTFHFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIF 60

Query: 133 KRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLI 192
           KRYASLYF +C D++DNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDEL++
Sbjct: 61  KRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIM 120

Query: 193 AGELQESSKKTVARLIAAQDSLVE 217
           AGELQE+SKKTV RLI+ QD+L+E
Sbjct: 121 AGELQETSKKTVLRLISQQDTLLE 144

[Close]

BLAST of Lag0014799 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.8e-49
Identity = 95/146 (65.07%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 75  IHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYKR 134
           + F+LL SRQGK+RL KWY P S KE+ KI REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 135 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 194
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 195 ELQESSKKTVARLIAAQDSLVETAKE 221
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Lag0014799 vs. ExPASy Swiss-Prot
Match: Q9DB50 (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.8e-49
Identity = 95/146 (65.07%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 75  IHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYKR 134
           + F+LL SRQGK+RL KWY P S KE+ KI REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 135 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 194
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 195 ELQESSKKTVARLIAAQDSLVETAKE 221
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Lag0014799 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.5e-82
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPYSQKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 78  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 137

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 138 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 197

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 198 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of Lag0014799 vs. ExPASy TrEMBL
Match: A0A1S3CGG1 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.5e-82
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPYSQKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. ExPASy TrEMBL
Match: A0A6J1C1K2 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 5.6e-82
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPYSQKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQ+DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. ExPASy TrEMBL
Match: A0A0A0K1P7 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.6e-81
Identity = 156/161 (96.89%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPY+QKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. ExPASy TrEMBL
Match: A0A6J1I247 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 6.2e-81
Identity = 155/161 (96.27%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLLISRQGKVRLTKWYSPY+QKERSK+IRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQDDNELE+LE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 298.5 bits (763), Expect = 4.7e-81
Identity = 146/160 (91.25%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSK+IRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 234
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Lag0014799 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-80
Identity = 145/161 (90.06%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSK+IRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 194 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 235
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Lag0014799 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 219.2 bits (557), Expect = 3.6e-57
Identity = 100/109 (91.74%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSK+IRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHK 183
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHK
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of Lag0014799 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 155.2 bits (391), Expect = 6.4e-38
Identity = 72/141 (51.06%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 74  VIHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYK 133
           +I F+LL +RQGK RL K+Y P  + E+ K+  E+  +++NR  K  NFVE+R  K +Y+
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 134 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 193
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 194 GELQESSKKTVARLIAAQDSL 215
           GELQE+SK+ +   ++  + L
Sbjct: 121 GELQETSKRAIIERMSELEKL 141

[Close]

BLAST of Lag0014799 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 4.6e-28
Identity = 58/138 (42.03%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 75  IHFVLLISRQGKVRLTKWYSPYSQKERSKIIRELSGMILNRGPKLCNFVEWRGLKAVYKR 134
           I F+L++++QG+ RL ++Y   + +ER  +  E+    L R  + C+FVE R  K VY+R
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 135 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 194
           YASL+F + +D D+NEL ILE IH  VE +D++FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 195 ELQESSKKTVARLIAAQD 213
            + E+SK  +   I   D
Sbjct: 123 CIVETSKANILSPIQLMD 140

The following BLAST results are available for this feature:

BLAST of Lag0014799 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888262.1	4.0e-82	98.76	AP-1 complex subunit sigma-2 [Benincasa hispida]	[more]
XP_008462009.1	5.2e-82	98.14	PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo]	[more]
KAA0050549.1	5.2e-82	98.14	AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex...	[more]
XP_022135730.1	1.1e-81	98.14	AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex ...	[more]
XP_004144562.1	3.3e-81	96.89	AP-1 complex subunit sigma-1 [Cucumis sativus]	[more]

BLAST of Lag0014799 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23685	6.6e-80	91.25	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
Q8LEZ8	1.5e-79	90.06	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
B0G185	9.2e-58	70.83	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q3ZBS3	7.8e-49	65.07	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]
Q9DB50	7.8e-49	65.07	AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1	[more]

BLAST of Lag0014799 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5G1	2.5e-82	98.14	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CGG1	2.5e-82	98.14	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1	[more]
A0A6J1C1K2	5.6e-82	98.14	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=...	[more]
A0A0A0K1P7	1.6e-81	96.89	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1	[more]
A0A6J1I247	6.2e-81	96.27	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1	[more]

BLAST of Lag0014799 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35410.2	4.7e-81	91.25	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	1.0e-80	90.06	associated protein 19	[more]
AT4G35410.1	3.6e-57	91.74	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	6.4e-38	51.06	SNARE-like superfamily protein	[more]
AT2G19790.1	4.6e-28	42.03	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 75..213 e-value: 1.3E-53 score: 180.8
None	No IPR available	GENE3D	3.30.450.60		coord: 74..230 e-value: 6.2E-65 score: 219.8
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 75..224
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 75..224
IPR044733	AP-1 complex subunit sigma	CDD	cd14831	AP1_sigma	coord: 76..216 e-value: 3.75552E-103 score: 292.925
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 75..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014799.1	Lag0014799.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030121	AP-1 adaptor complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0035615	clathrin adaptor activity