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Lag0014609 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGCAGTCAGGCACACATGCCTGAAGCTCGAAGTACCAACCGACGCGCAACCAAACGAAAGCGCCTCCATCTTCGTCAAAGGCACTTGGTTTCACCACCGCTTCCAGCTCTCGATCACCGATGGCCTCAACGCTTGGACCTGCAATGGTGCCATTTCTAAAACTACCACTCAATTAACTCTACTTAAGTTTCTCTTCGATTCTGCTCCTATCTCGACTTGATTCTCATATTTCTCTGTTTCCCCCTGAATTTGGGTGGGACAGCGACGGAGGACGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCCTTGGCCGAGCGCTATTTGGGGTTTCAACAGCCTGGTTCGGTCTATCGATTCGCCGATGCTGGAAATGGAGACCAGAGGGTTTGTGCTTGTTTGATTTCATACCTTTTTTTTTTTTTTTTGTCTCCCTCTTGGTCTAAACTGATGAGGTAATTGAAGATTTTATCAGGGACTGTTCGTTATTTAGGTATTAGTAAGCAAACGATGATTTCTCATTTTGACTTAGAATTGGCCTCTTTGAATGTCTTTGTTCTTGTTGTGAAGAACTCCAAAAACCATGATTTAAACACAATATTTATAGTGGTTCGACCAATGAAGTCTACATCCACTGTGCAAGGCGAGATCAATCTTCTATTAACTTTAATTCAAGAACAAGAGTACAATAAAAAAGAGAGAAAACTTCAAGCAACCCACAAATCTCTCACAATTTCTCTCTTAAAAATATCCAAAAGCCACTTGCTTCAAAGAAAGAAAAACACTGTTGTTCTGCAAAACCTCAAAAACTGCCGCTGCTATTTTTCGTTTCTGTACCATGAAGGAAAAAACCAGCCACCACGATTCTCCACTCTCGGTAAAAAACCATAACACACGTTAATGATGGGTTGAGTTAAATGTGTGCTAACATTGGGCTTTGTACATAATAAAACACACAAGCCCAATATTGACTTTTAATGGATATGGCTTGAGTCATCACATTAGTCAACAGTTCTTGCTAGAGAGTGAATTGAATGGAAATTTGGCTTTTAACTCCCTGGTCTACTTGTGAGTTAACAGAAATGTTGTAATGGAGTATTGAAATAACCAATATTTTTAAAATGTAGGTGCAATAATCTACCTAAGCTTATTTCGTGAGGCGTAACAAAGTGAGGACTTTCGTTTGTGAAGGAAAAGTATAAGATGTATTTATTGAAAAATACAGTAGCATGAATAATTATAAGAACTGACTTTTCCGAAGAGATTCTTTAGAGAGTTAGATGTTTTCTTCTTATTTCTTGGGGGAAAAAACTTTGAGATGAAGCAACATGTGCGCTCTATTTGCCTGTTGAGATGAATCAACATGCGCTCCTGAGCAAACTGCACTTTTGATCGTTGAGATTTGGGGTCTTTTTGGTCCCTGAGGTTTCAAAAGGGACATTTTAGTACCTTATGTTTAGGAAATGATTCTAAATAGTCCTTAAACTTCTTTGACCTTTAGCAACTAATGGTTAGATGATGTGGTGGTTAAATTGTTGACTATACCTGGTTGATTTGACAAAATATATCAATTTAATCATATTGTTTCTAGGTGACTAGAGTTTATCTCCTCCTTCCTCTCCTTCCTTTGGCATACCTGCTATCTCCAAAGTGTCTCTTTTGAAACCTCATAAGCCAAATACCAACTCCAAACTTTGGGGACCAAATGTTTAGTTGGCCTATATTCTATTATATTAGGATAAGCTTGGTTTAATTTTTTTTAAAATTCTAATAGCAGTTTAAGCATTCGATTATAATCATCAATCTCTTTGGATGGGCTAGGTGGTTTTGATATAGTAATTTTATGAAGTTGGAATGGGGATTAAATTAGCTCAACTATAAAGTTCGGGTTTTCATTTTGATCTTTGGACCATATTGATTGACATTTTGTACTGGTTCTTATGTAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAATTAGAATGGCGATGGAAGTGTCGACCAGCATCTGATAATAAGACTAGCACAGCTGGAATATTGGATTTTCTTATGGATGCAAACATAAGGCTGAGCGTAATATTATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCCAGGTTACTTCTATTCAGCTATTTGTTCGTACTACTTGTTAACTTCTTGGGCATAACATATTAATAGTCACTTATTAGTGATGCACATGAATGGATTAACAAGATTCACGATGTCCCTATCTAAAACAAAAGTTACTGGTACTCGCATGATTCATGAACATTGGAATTTTAGTTGCAGCCCATGCTTTCTAATACACAAGGGACGTTAAAGTGCAATAGCCCTAGCTAGGCACACGACTTGTAAAAGAGTGTTTACAGCCCTCTGTTTGGTTCTGTTATGTGATTGTTGTTTAAACGTTTTGATAGTTGTTTATCTCTTCTAAGCTTTGATAAGGGTTATGGAAAAAATAAAAGGGCTTAGAGGGAATGAGTTCAATCCATAATGACCACCTACCTAGGATTTAGTATCCTATGTGTTTCCTAGCAACCAAATATAGTAAGGTCATGCGGTTGTCCTGTACCCGAACACTCACAGATATCAAAAAAAAAAAAAAAAAGCTCTGATAAGGAGTCAGGAATACTAGTTACTAAGGAAATTACAGAAGTAAATTAATTTATTTTGATTAGTGATTTGGAAGTCAATTATGAGTCTCCTAGTGAGTCATTCTATATTGGAAATATTGCTTTTGTTCATTCTGTTTTCTTCACTGACACACCAATTTCACTACATATGGTATTTGAATTGTGCCGTAGAGATGTTCTGTTCTTAGCTTTTTCTCATAACTTATGCCTGCTTGATTTTTGTTTGTATAGGAAGAGGTTGTGAGAAAAACTCAATCATTTGAGAGGCTGAAAGTGGAGTATGAGAAGTGTCTGGCTCAGAGCGAGAAGATTCGTGATGAAAAGGTGGAGTTTGAAACTGCAATTTATGCAAAGGTACTGAAAATTTCATGTACTTGTAATTTGGACTTTAACCCATCTATTCTTTTCTTCGTCATCTCAGTGAGTGTAATACCATCATGAATTATTGTTTCTTCAAACATCATGCTACACGTTTGCTTCATTCCTTGTATTTTAAAGCGTAGCTAGATGTCTTGTGGTAACCAAAACTACCGTCTACATCATTTTGCATTTTCTTTGTAACTAATAGTTTTTATTAATCGATTCTACAATCGGGCAACCTTTCCATTGTGGCATTAATCTACTTGTCATATGAGTTTTTTTCTACATTGATCAAGGTTGGTAGACTCTGGAAATAGGTCAGATCAGTAGGATTCTTTTTCTGTTTTTAATAATTTAACCTAAAAGTTATACTTAATATCTCTAAGCTATGGGTTGGTTTCAATTATACCTTCCGACGGTTAAAAATTTCTTTGAAGTTTGAAATTTGTTTCAAAACGACTTTTAAAGGTTTTTTTTCCTTTAAATTCATGGACGGAAAATGACGTGTTTGTATATATATTATTATTTGTGTGAACAGATTTGGGCACATATGGAGAAAAAAAAGACACACAAACACGTTATTTTCTGTCAAGAAAAAGTCTTCAAAGGTTGTTTTGAAATAAACTTCAAATTTTAGAGGTTAAAATGAAACTTTTAGAAGTTTGGGGTATGATTGAAACCAATTCCGTAGTTCATGGTACTTTTAAGGGAAAATTTATAGTACTACTGTAGTATATACTCAACATTTGACACGTCATTTAATGAGCATTTAATGATATAATATTTTATTTCGGGGTCCCACACAATTCTTAAATAATTCCTTCATGGCAAACAATGAATGAAGGTAGTATGGAAAATTTTCCATACTACCGTAGTACTAGAAATTTTCCCGTACTTTTAATAATTTAAGTGAACTTTTATGCAATACATATGGAAATGCAATGTTGATGATTAAGTAAATTCTCAAATCTTTTTGAGCTCATAATCTCTAATGAATGTTTCATCTATTACTGAAATGGCATCACTTGTTTCTATTTGAAAGCTGTAAATGTTGTTTTGGTGGCTTCCAGTTTCTAAATGTCTTGAACGCAAAGAAGGCCAAACTTAGAGAGTACAGAGATCAACTTTCAAAACAGACTACTACTAGCAGCAAACTGAAACAAGAAGAAGACTACTCCTCTGATAAAACTGAAACTTATGACGATGAAAGCGATCCAGAAAAGAACTGA ATGGACGCAGTCAGGCACACATGCCTGAAGCTCGAAGTACCAACCGACGCGCAACCAAACGAAAGCGCCTCCATCTTCGTCAAAGGCACTTGGTTTCACCACCGCTTCCAGCTCTCGATCACCGATGGCCTCAACGCTTGGACCTGCAATGCGACGGAGGACGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCCTTGGCCGAGCGCTATTTGGGGTTTCAACAGCCTGGTTCGGTCTATCGATTCGCCGATGCTGGAAATGGAGACCAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAATTAGAATGGCGATGGAAGTGTCGACCAGCATCTGATAATAAGACTAGCACAGCTGGAATATTGGATTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCATTTGAGAGGCTGAAAGTGGAGTATGAGAAGTGTCTGGCTCAGAGCGAGAAGATTCGTGATGAAAAGGTGGAGTTTGAAACTGCAATTTATGCAAAGTTTCTAAATGTCTTGAACGCAAAGAAGGCCAAACTTAGAGAGTACAGAGATCAACTTTCAAAACAGACTACTACTAGCAGCAAACTGAAACAAGAAGAAGACTACTCCTCTGATAAAACTGAAACTTATGACGATGAAAGCGATCCAGAAAAGAACTGA ATGGACGCAGTCAGGCACACATGCCTGAAGCTCGAAGTACCAACCGACGCGCAACCAAACGAAAGCGCCTCCATCTTCGTCAAAGGCACTTGGTTTCACCACCGCTTCCAGCTCTCGATCACCGATGGCCTCAACGCTTGGACCTGCAATGCGACGGAGGACGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCCTTGGCCGAGCGCTATTTGGGGTTTCAACAGCCTGGTTCGGTCTATCGATTCGCCGATGCTGGAAATGGAGACCAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAATTAGAATGGCGATGGAAGTGTCGACCAGCATCTGATAATAAGACTAGCACAGCTGGAATATTGGATTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCATTTGAGAGGCTGAAAGTGGAGTATGAGAAGTGTCTGGCTCAGAGCGAGAAGATTCGTGATGAAAAGGTGGAGTTTGAAACTGCAATTTATGCAAAGTTTCTAAATGTCTTGAACGCAAAGAAGGCCAAACTTAGAGAGTACAGAGATCAACTTTCAAAACAGACTACTACTAGCAGCAAACTGAAACAAGAAGAAGACTACTCCTCTGATAAAACTGAAACTTATGACGATGAAAGCGATCCAGAAAAGAACTGA MDAVRHTCLKLEVPTDAQPNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYRFADAGNGDQRLSWTFDKEGMKLEWRWKCRPASDNKTSTAGILDFLMDANIRLSEEVVRKTQSFERLKVEYEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETYDDESDPEKN Homology
BLAST of Lag0014609 vs. NCBI nr
Match: XP_038888651.1 (DNA repair protein XRCC4 [Benincasa hispida]) HSP 1 Score: 413.7 bits (1062), Expect = 1.1e-111 Identity = 208/234 (88.89%), Postives = 219/234 (93.59%), Query Frame = 0
BLAST of Lag0014609 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa] >TYK06916.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa]) HSP 1 Score: 412.1 bits (1058), Expect = 3.1e-111 Identity = 208/234 (88.89%), Postives = 221/234 (94.44%), Query Frame = 0
BLAST of Lag0014609 vs. NCBI nr
Match: XP_022141947.1 (DNA repair protein XRCC4-like [Momordica charantia]) HSP 1 Score: 409.8 bits (1052), Expect = 1.5e-110 Identity = 208/235 (88.51%), Postives = 218/235 (92.77%), Query Frame = 0
BLAST of Lag0014609 vs. NCBI nr
Match: XP_004136882.1 (DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_017256 [Cucumis sativus]) HSP 1 Score: 406.0 bits (1042), Expect = 2.2e-109 Identity = 205/234 (87.61%), Postives = 218/234 (93.16%), Query Frame = 0
BLAST of Lag0014609 vs. NCBI nr
Match: KAG6571850.1 (DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 400.2 bits (1027), Expect = 1.2e-107 Identity = 198/234 (84.62%), Postives = 217/234 (92.74%), Query Frame = 0
BLAST of Lag0014609 vs. ExPASy Swiss-Prot
Match: Q682V0 (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2) HSP 1 Score: 269.6 bits (688), Expect = 3.3e-71 Identity = 141/234 (60.26%), Postives = 177/234 (75.64%), Query Frame = 0
BLAST of Lag0014609 vs. ExPASy Swiss-Prot
Match: Q13426 (DNA repair protein XRCC4 OS=Homo sapiens OX=9606 GN=XRCC4 PE=1 SV=2) HSP 1 Score: 50.8 bits (120), Expect = 2.4e-05 Identity = 58/232 (25.00%), Postives = 99/232 (42.67%), Query Frame = 0
BLAST of Lag0014609 vs. ExPASy TrEMBL
Match: A0A5A7SK69 (DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002240 PE=4 SV=1) HSP 1 Score: 412.1 bits (1058), Expect = 1.5e-111 Identity = 208/234 (88.89%), Postives = 221/234 (94.44%), Query Frame = 0
BLAST of Lag0014609 vs. ExPASy TrEMBL
Match: A0A1S3BZW1 (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1) HSP 1 Score: 412.1 bits (1058), Expect = 1.5e-111 Identity = 208/234 (88.89%), Postives = 221/234 (94.44%), Query Frame = 0
BLAST of Lag0014609 vs. ExPASy TrEMBL
Match: A0A6J1CL88 (DNA repair protein XRCC4-like OS=Momordica charantia OX=3673 GN=LOC111012197 PE=4 SV=1) HSP 1 Score: 409.8 bits (1052), Expect = 7.5e-111 Identity = 208/235 (88.51%), Postives = 218/235 (92.77%), Query Frame = 0
BLAST of Lag0014609 vs. ExPASy TrEMBL
Match: A0A0A0K2L2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1) HSP 1 Score: 406.0 bits (1042), Expect = 1.1e-109 Identity = 205/234 (87.61%), Postives = 218/234 (93.16%), Query Frame = 0
BLAST of Lag0014609 vs. ExPASy TrEMBL
Match: A0A6J1GJL0 (DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1) HSP 1 Score: 400.2 bits (1027), Expect = 5.9e-108 Identity = 198/234 (84.62%), Postives = 217/234 (92.74%), Query Frame = 0
BLAST of Lag0014609 vs. TAIR 10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4 ) HSP 1 Score: 269.6 bits (688), Expect = 2.3e-72 Identity = 141/234 (60.26%), Postives = 177/234 (75.64%), Query Frame = 0
BLAST of Lag0014609 vs. TAIR 10
Match: AT3G23100.2 (homolog of human DNA ligase iv-binding protein XRCC4 ) HSP 1 Score: 269.6 bits (688), Expect = 2.3e-72 Identity = 141/234 (60.26%), Postives = 177/234 (75.64%), Query Frame = 0
BLAST of Lag0014609 vs. TAIR 10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4 ) HSP 1 Score: 89.7 bits (221), Expect = 3.3e-18 Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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