Lag0014571 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014571
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGRF-type domain-containing protein
Locationchr12: 2171845 .. 2172462 (-)
RNA-Seq ExpressionLag0014571
SyntenyLag0014571
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTTGGGACATTTATGAGGAATCTTATCTAGAATGTTACTGTGGAGTGCCTGCAAAACTGAGAACGTCCCTGACACAAAAAAATCCATTCAGGTTATTCTACAACTGTCCAAAGGAGATATCTCAAGTAAGCATATACATCCTCTGTTAAGCAATTTAAGAACTGCTTCAAGTTGATATACTCTGTGTACTTTGTTTATCTTGTCTCCTTTATTTATGTCCTGAACACTGCCAGCAATGTGGTTTTTTTCACTGGGCTGATGAACCTGAACCATCGGATGATGGACGTTTTTTTCACTGGGCTGATGAACCTGAACCATCCGATGATGGACATGAAGATGAACTAAACTTAATCCGCAACGAGTGCATTCGTCTACAAGAAAGATTAGACGAAATCGACGAGGAGCATGATATTGAAAGAGCAGAGTGGTTTAGGGAAAAGGATGAGCTAACATTGAAACTATTCACTCTGCAAACTGAGCTCGATGATATTCGGAATAGAATAAGGGTGGCAAATGAACCCTTGTCAATGCCTCCTTTTGATTCACTTTCCATTAGGGACAACGAGGATGAGGACGAGGACGATGACACACTAGTTGTATATACTTTGTAA

mRNA sequence

ATGTCTTCTTGGGACATTTATGAGGAATCTTATCTAGAATGTTACTGTGGAGTGCCTGCAAAACTGAGAACGTCCCTGACACAAAAAAATCCATTCAGGTTATTCTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTTTTTCACTGGGCTGATGAACCTGAACCATCGGATGATGGACGTTTTTTTCACTGGGCTGATGAACCTGAACCATCCGATGATGGACATGAAGATGAACTAAACTTAATCCGCAACGAGTGCATTCGTCTACAAGAAAGATTAGACGAAATCGACGAGGAGCATGATATTGAAAGAGCAGAGTGGTTTAGGGAAAAGGATGAGCTAACATTGAAACTATTCACTCTGCAAACTGAGCTCGATGATATTCGGAATAGAATAAGGGTGGCAAATGAACCCTTGTCAATGCCTCCTTTTGATTCACTTTCCATTAGGGACAACGAGGATGAGGACGAGGACGATGACACACTAGTTGTATATACTTTGTAA

Coding sequence (CDS)

ATGTCTTCTTGGGACATTTATGAGGAATCTTATCTAGAATGTTACTGTGGAGTGCCTGCAAAACTGAGAACGTCCCTGACACAAAAAAATCCATTCAGGTTATTCTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTTTTTCACTGGGCTGATGAACCTGAACCATCGGATGATGGACGTTTTTTTCACTGGGCTGATGAACCTGAACCATCCGATGATGGACATGAAGATGAACTAAACTTAATCCGCAACGAGTGCATTCGTCTACAAGAAAGATTAGACGAAATCGACGAGGAGCATGATATTGAAAGAGCAGAGTGGTTTAGGGAAAAGGATGAGCTAACATTGAAACTATTCACTCTGCAAACTGAGCTCGATGATATTCGGAATAGAATAAGGGTGGCAAATGAACCCTTGTCAATGCCTCCTTTTGATTCACTTTCCATTAGGGACAACGAGGATGAGGACGAGGACGATGACACACTAGTTGTATATACTTTGTAA

Protein sequence

MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERAEWFREKDELTLKLFTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL
Homology
BLAST of Lag0014571 vs. NCBI nr
Match: XP_022148840.1 (uncharacterized protein LOC111017399 [Momordica charantia])

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-56
Identity = 115/169 (68.05%), Postives = 134/169 (79.29%), Query Frame = 0

Query: 1   MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDD 60
           MS+ +I+EES LECYCG+PAKLRTS T KNPFRLFYNCPKEISQQCG             
Sbjct: 1   MSTSEIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCG------------- 60

Query: 61  GRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERAEWFREKDELTLKL 120
             FFHWADEPEPSDD H +ELNLIRN C+ LQ+RLDEI+EEHD E+AEW R+K+ELTL+L
Sbjct: 61  --FFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDEIEEEHDNEKAEWERDKEELTLQL 120

Query: 121 FTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL 170
            TLQ++LDDI++RIR+ANE  SMPP D+LSIRD    DE DD LV+YTL
Sbjct: 121 VTLQSQLDDIQHRIRMANESFSMPPLDALSIRD----DEGDDALVIYTL 150

BLAST of Lag0014571 vs. NCBI nr
Match: XP_008455003.1 (PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo] >XP_008455004.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo] >XP_008455006.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo] >XP_016901682.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo] >KAA0031344.1 uncharacterized protein E6C27_scaffold139G00980 [Cucumis melo var. makuwa] >TYK06797.1 uncharacterized protein E5676_scaffold13G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 7.8e-56
Identity = 117/169 (69.23%), Postives = 131/169 (77.51%), Query Frame = 0

Query: 1   MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDD 60
           MSS +IYEESYLECYCG  AKLR S T+KNPFRLFYNCPKE+SQQCG             
Sbjct: 1   MSSSEIYEESYLECYCGAAAKLRMSHTEKNPFRLFYNCPKELSQQCG------------- 60

Query: 61  GRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERAEWFREKDELTLKL 120
             FFHWADEPEPSDD H +EL+LIRN CIRL ERLDEI EEH+ E+ EW REK ELTLKL
Sbjct: 61  --FFHWADEPEPSDDRHANELDLIRNVCIRLTERLDEIIEEHEDEKEEWEREKAELTLKL 120

Query: 121 FTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL 170
            TLQT+LDDI NRIR+ NE  SMPPF+SLSIR   D+D+++DTLVVY L
Sbjct: 121 STLQTQLDDINNRIRITNESFSMPPFESLSIR---DDDDNNDTLVVYAL 151

BLAST of Lag0014571 vs. NCBI nr
Match: XP_004136954.1 (uncharacterized protein LOC101219463 [Cucumis sativus] >XP_031745287.1 uncharacterized protein LOC101219463 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 6.6e-55
Identity = 116/169 (68.64%), Postives = 130/169 (76.92%), Query Frame = 0

Query: 1   MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDD 60
           MSS +IYEESYLECYCGV AKLR S T+K PFRLFYNCPKEISQQCG             
Sbjct: 1   MSSSEIYEESYLECYCGVAAKLRMSHTEKGPFRLFYNCPKEISQQCG------------- 60

Query: 61  GRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERAEWFREKDELTLKL 120
             FFHWADE EPS+D H +EL+LIRN CIRL ERLDEI EEH+ E+ EW REK ELTLKL
Sbjct: 61  --FFHWADEREPSNDRHANELDLIRNVCIRLTERLDEIVEEHEDEKEEWEREKAELTLKL 120

Query: 121 FTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL 170
            TLQT+LDDI NR+R+ NE  SMPPF+SLSIRD    D+DD+TLV+YTL
Sbjct: 121 STLQTQLDDIHNRVRITNESFSMPPFESLSIRD----DDDDNTLVIYTL 150

BLAST of Lag0014571 vs. NCBI nr
Match: KAE8645848.1 (hypothetical protein Csa_017077 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 4.0e-52
Identity = 111/166 (66.87%), Postives = 126/166 (75.90%), Query Frame = 0

Query: 1   MSSWDIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDD 60
           MSS +IYEESYLECYCGV AKLR S T+K PFRLFYNCPKEISQQCG             
Sbjct: 1   MSSSEIYEESYLECYCGVAAKLRMSHTEKGPFRLFYNCPKEISQQCG------------- 60

Query: 61  GRFFHWADEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERAEWFREKDELTLKL 120
             FFHWADE EPS+D H +EL+LIRN CIRL ERLDEI EEH+ E+ EW REK ELTLKL
Sbjct: 61  --FFHWADEREPSNDRHANELDLIRNVCIRLTERLDEIVEEHEDEKEEWEREKAELTLKL 120

Query: 121 FTLQTELDDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVV 167
            TLQT+LDDI NR+R+ NE  SMPPF+SLSIRD    D+DD+T+ +
Sbjct: 121 STLQTQLDDIHNRVRITNESFSMPPFESLSIRD----DDDDNTVTI 147

BLAST of Lag0014571 vs. NCBI nr
Match: XP_008236393.1 (PREDICTED: uncharacterized protein At4g04775-like isoform X1 [Prunus mume])

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-39
Identity = 92/162 (56.79%), Postives = 110/162 (67.90%), Query Frame = 0

Query: 8   EESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDGRFFHWA 67
           E+S L+C CG+PAKLR S T KNPFRLFYNCPK IS QC                FF W+
Sbjct: 22  EDSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQC---------------EFFRWS 81

Query: 68  DEPEPSDDGHEDELNLIRNECIRLQERLDEIDEEHDIERAEWFREKDELTLKLFTLQTEL 127
           DEP P+ D   DE NLIR+ECIRLQE L+EI +E D ER EW REK ELT +L TLQ+EL
Sbjct: 82  DEPAPTGDRETDEQNLIRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTLQSEL 141

Query: 128 DDIRNRIRVANEPLSMPPFDSLSIRDNEDEDEDDDTLVVYTL 170
           D ++ RI++ANE   MPP D LSI D    D+DDD LV++T+
Sbjct: 142 DALKKRIKIANESDLMPPLDKLSIAD----DKDDDALVLHTV 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022148840.12.7e-5668.05uncharacterized protein LOC111017399 [Momordica charantia][more]
XP_008455003.17.8e-5669.23PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo] >XP_008455004.1 P... [more]
XP_004136954.16.6e-5568.64uncharacterized protein LOC101219463 [Cucumis sativus] >XP_031745287.1 uncharact... [more]
KAE8645848.14.0e-5266.87hypothetical protein Csa_017077 [Cucumis sativus][more]
XP_008236393.11.8e-3956.79PREDICTED: uncharacterized protein At4g04775-like isoform X1 [Prunus mume][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 113..133
NoneNo IPR availableCOILSCoilCoilcoord: 81..108
NoneNo IPR availablePANTHERPTHR33248:SF19RETICULOCYTE-BINDING PROTEIN 2 HOMOLOG A-LIKEcoord: 2..59
NoneNo IPR availablePANTHERPTHR33248:SF19RETICULOCYTE-BINDING PROTEIN 2 HOMOLOG A-LIKEcoord: 62..156
NoneNo IPR availablePANTHERPTHR33248ZINC ION-BINDING PROTEINcoord: 2..59
NoneNo IPR availablePANTHERPTHR33248ZINC ION-BINDING PROTEINcoord: 62..156
IPR010666Zinc finger, GRF-typePFAMPF06839zf-GRFcoord: 14..54
e-value: 1.4E-12
score: 47.5
IPR027310Profilin conserved sitePROSITEPS00414PROFILINcoord: 1..9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014571.1Lag0014571.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003779 actin binding
molecular_function GO:0008270 zinc ion binding