Lag0014524 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014524
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	16S rRNA (uracil(1498)-N(3))-methyltransferase
Location	chr12: 1699046 .. 1700396 (+)
RNA-Seq Expression	Lag0014524
Synteny	Lag0014524

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGAAGCAGGAGCAATTGCTGTCGGTCTTGGCCCATATCGACTACGTGTTGAAACTGCAACAGTTGCCATCTTATCAACCCTGATGTTATGGTCAGACTCAAAAAGTTCTAATACTTAATCTCTCTTTCAGGTTAGTCCTCGTCTGATTGTGTATTGATAATCAGAATTTCCTGCATATCTATTTTGTTTTGCTTCAAGGATGTACTAAAAATTAAAACTTGAAAATTGACAAATGAATGAAACGCAAAGGGAATGGATGCTCATGAAATAGATCTTGAATATAGGTTTAACTTCTATTTTGGTCAATCAACTTCCATATGTATTCTGTTCTGTTCCTCGAACTTTTAAATATTTTGTTTTAATCCCTCAACTTTCAAATGTTCTATTTTAGTCCGTGAAGTTTGCATAAAAATCTATTTAACATTATTTTAGTTTCTCACTAATCATTCAACGAGAATCTAAATCCATTTGGAAACTTGATATCTAATCTAGTGCATATGACATTATAACTTCAAATACTTACCTACTGACATATTAGGAAAATCAATAAAAGATGTACTGATATCCAGATTCTACTGAATAGTTTATTAAAAAACTAATGCCAATGACAACAAAATATTTGAAAGTTCATGGACCAAAATAGTAGTATAGACCAGAATAGGATTTAAACCTTGAATACATTACTTACAAATTCATCTTTCTTCCTATTGAATGGAAAAAATGATTCCCATCACGTCGAGATCTCAAAAAAGGTCTAGCATCAGTACATCCTTCTATTTCTCCATCACTTCTTGACCCAATAGTTAATCCATGAAAGTTAACCCATCCCAAACTCTTGAAAATGACTTACAGTTAAAAACCACACATTCCCCACTAGTTTTCACTTGTTTCGATTCTATTTATAATTTACTGATTTACTACAGTGATCCATAGTGAAATATAGACTTAGAAGAGCAAAACTAACAATGAAGTTAGTTTCTATCATTATTTCTTAAGCTGTATTAGGTGAAAGGATTGTTGTTCATACAAAGTTATTGTCTTACTGTTTGCTAGATAGGTTAACTAAACCATTCGCCCAAGCTTGGAGGGAGGTTAGATTTCAAAAATTTTCTACTGGGAATACTAGAATCCATTCAAGAAGTTTCAACATTCTAATGGTTCACCGATCACGAGGTATCCTCAAAATCAGCACATTTGCAAAGCCTCGAAGTCGGTGTGTTTGCGGCTTGGGGCATGTAGTACAATTTGAGGCATTCTACAAGAAGGGGATTCCATTTAAGGATTGGTCTCTGATGATGGGGGACTTCTTGAGGAAGATTACAATTATGTATTTTGATGGTTGA

mRNA sequence

ATGATGAAAGAAGCAGGAGCAATTGCTGTCGGTCTTGGCCCATATCGACTACGTGTTGAAACTGCAACAGTTGCCATCTTATCAACCCTGATGTTATGGTTAACTAAACCATTCGCCCAAGCTTGGAGGGAGGTTAGATTTCAAAAATTTTCTACTGGGAATACTAGAATCCATTCAAGAAGTTTCAACATTCTAATGGTTCACCGATCACGAGGTATCCTCAAAATCAGCACATTTGCAAAGCCTCGAAGTCGGTGTGTTTGCGGCTTGGGGCATGTAGTACAATTTGAGGCATTCTACAAGAAGGGGATTCCATTTAAGGATTGGTCTCTGATGATGGGGGACTTCTTGAGGAAGATTACAATTATGTATTTTGATGGTTGA

Coding sequence (CDS)

ATGATGAAAGAAGCAGGAGCAATTGCTGTCGGTCTTGGCCCATATCGACTACGTGTTGAAACTGCAACAGTTGCCATCTTATCAACCCTGATGTTATGGTTAACTAAACCATTCGCCCAAGCTTGGAGGGAGGTTAGATTTCAAAAATTTTCTACTGGGAATACTAGAATCCATTCAAGAAGTTTCAACATTCTAATGGTTCACCGATCACGAGGTATCCTCAAAATCAGCACATTTGCAAAGCCTCGAAGTCGGTGTGTTTGCGGCTTGGGGCATGTAGTACAATTTGAGGCATTCTACAAGAAGGGGATTCCATTTAAGGATTGGTCTCTGATGATGGGGGACTTCTTGAGGAAGATTACAATTATGTATTTTGATGGTTGA

Protein sequence

MMKEAGAIAVGLGPYRLRVETATVAILSTLMLWLTKPFAQAWREVRFQKFSTGNTRIHSRSFNILMVHRSRGILKISTFAKPRSRCVCGLGHVVQFEAFYKKGIPFKDWSLMMGDFLRKITIMYFDG

Homology

[Close]

BLAST of Lag0014524 vs. NCBI nr
Match: XP_008455052.1 (PREDICTED: ribosomal RNA small subunit methyltransferase E [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1   MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 34
           MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW
Sbjct: 256 MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 288

[Close]

BLAST of Lag0014524 vs. NCBI nr
Match: KAA0031377.1 (ribosomal RNA small subunit methyltransferase E [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1   MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 34
           MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW
Sbjct: 250 MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 282

[Close]

BLAST of Lag0014524 vs. NCBI nr
Match: TYK06829.1 (ribosomal RNA small subunit methyltransferase E [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1   MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 34
           MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW
Sbjct: 269 MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 301

[Close]

BLAST of Lag0014524 vs. NCBI nr
Match: XP_031744710.1 (uncharacterized protein LOC101213733 isoform X2 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1   MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 34
           MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW
Sbjct: 225 MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 257

[Close]

BLAST of Lag0014524 vs. NCBI nr
Match: XP_004136932.2 (uncharacterized protein LOC101213733 isoform X1 [Cucumis sativus] >XP_031744709.1 uncharacterized protein LOC101213733 isoform X1 [Cucumis sativus] >KGN43899.2 hypothetical protein Csa_017251 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1   MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 34
           MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW
Sbjct: 256 MMKEAGAIAVGLGPYRLRVETATVAILSTLMLW 288

The following BLAST results are available for this feature:

BLAST of Lag0014524 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455052.1	3.9e-07	100.00	PREDICTED: ribosomal RNA small subunit methyltransferase E [Cucumis melo]	[more]
KAA0031377.1	3.9e-07	100.00	ribosomal RNA small subunit methyltransferase E [Cucumis melo var. makuwa]	[more]
TYK06829.1	3.9e-07	100.00	ribosomal RNA small subunit methyltransferase E [Cucumis melo var. makuwa]	[more]
XP_031744710.1	3.9e-07	100.00	uncharacterized protein LOC101213733 isoform X2 [Cucumis sativus]	[more]
XP_004136932.2	3.9e-07	100.00	uncharacterized protein LOC101213733 isoform X1 [Cucumis sativus] >XP_031744709....	[more]

BLAST of Lag0014524 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 1..47 e-value: 9.5E-6 score: 27.1
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 2..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014524.1	Lag0014524.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008168	methyltransferase activity