Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCCCACCATTCTCTCAACCATATGCTTACTAGGGTTACTTCTAGCTCCCATCTCCCTGGCCCAAAACTCCCCCCAAGACTTCGTCGACACACACAACGCCGTTCGAGCGGAGGTCGGTGTCGGGCCGGTCTCCTGGGACGACACTCTAGCGGCCTACGCTCAGAATTATGCAGATAGCAAGATCGAAACCTGCGAGATGGAGCACTCCAACGGACCCTACGGCGAAAACCTCGCCGAGGGTTACGGTGAGATGACAGCAGTGGAGGCGGTCAAGTTTTGGGCGACTGAGAAGAAGTTCTATAACCACCATTTGAACCGATGCGTCGGGGACGAGTGCGGCCATTACACACAAATAGTGTGGAGGGACACTAAACATATAGGGTGTGGTAGAGTGAAGTGTGAGAACAATTGGGTTTTTGTGATGTGCAACTATAATCCTCCTGGCAACTATATAGGCCAATATCCTTACTGA
mRNA sequence
ATGGCTTCCCCCACCATTCTCTCAACCATATGCTTACTAGGGTTACTTCTAGCTCCCATCTCCCTGGCCCAAAACTCCCCCCAAGACTTCGTCGACACACACAACGCCGTTCGAGCGGAGGTCGGTGTCGGGCCGGTCTCCTGGGACGACACTCTAGCGGCCTACGCTCAGAATTATGCAGATAGCAAGATCGAAACCTGCGAGATGGAGCACTCCAACGGACCCTACGGCGAAAACCTCGCCGAGGGTTACGGTGAGATGACAGCAGTGGAGGCGGTCAAGTTTTGGGCGACTGAGAAGAAGTTCTATAACCACCATTTGAACCGATGCGTCGGGGACGAGTGCGGCCATTACACACAAATAGTGTGGAGGGACACTAAACATATAGGGTGTGGTAGAGTGAAGTGTGAGAACAATTGGGTTTTTGTGATGTGCAACTATAATCCTCCTGGCAACTATATAGGCCAATATCCTTACTGA
Coding sequence (CDS)
ATGGCTTCCCCCACCATTCTCTCAACCATATGCTTACTAGGGTTACTTCTAGCTCCCATCTCCCTGGCCCAAAACTCCCCCCAAGACTTCGTCGACACACACAACGCCGTTCGAGCGGAGGTCGGTGTCGGGCCGGTCTCCTGGGACGACACTCTAGCGGCCTACGCTCAGAATTATGCAGATAGCAAGATCGAAACCTGCGAGATGGAGCACTCCAACGGACCCTACGGCGAAAACCTCGCCGAGGGTTACGGTGAGATGACAGCAGTGGAGGCGGTCAAGTTTTGGGCGACTGAGAAGAAGTTCTATAACCACCATTTGAACCGATGCGTCGGGGACGAGTGCGGCCATTACACACAAATAGTGTGGAGGGACACTAAACATATAGGGTGTGGTAGAGTGAAGTGTGAGAACAATTGGGTTTTTGTGATGTGCAACTATAATCCTCCTGGCAACTATATAGGCCAATATCCTTACTGA
Protein sequence
MASPTILSTICLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYADSKIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQIVWRDTKHIGCGRVKCENNWVFVMCNYNPPGNYIGQYPY
Homology
BLAST of Lag0014511 vs. NCBI nr
Match:
XP_022952867.1 (basic form of pathogenesis-related protein 1-like [Cucurbita moschata])
HSP 1 Score: 317.0 bits (811), Expect = 9.2e-83
Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 0
Query: 1 MASPTILSTICLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYA 60
MASPTILSTICL+G LLAPIS AQNSP+DFVDTHN +RA VGVGPVSWDD LAAYAQNYA
Sbjct: 1 MASPTILSTICLVGFLLAPISNAQNSPEDFVDTHNDIRAAVGVGPVSWDDNLAAYAQNYA 60
Query: 61 DSKIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQ 120
SKIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQ
Sbjct: 61 YSKIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQ 120
Query: 121 IVWRDTKHIGCGRVKCENNWVFVMCNYNPPGNYIGQYPY 160
IVWR+TK+IGC RVKCENNWVFV+C+Y PPGNY+GQYPY
Sbjct: 121 IVWRNTKNIGCARVKCENNWVFVICSYYPPGNYVGQYPY 159
BLAST of Lag0014511 vs. NCBI nr
Match:
XP_023554743.1 (basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 316.2 bits (809), Expect = 1.6e-82
Identity = 143/159 (89.94%), Postives = 150/159 (94.34%), Query Frame = 0
Query: 1 MASPTILSTICLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYA 60
MASPTILSTICL+G LLAPIS AQNSP+DFVDTHN VRA VGVGPVSWDD LA YAQNYA
Sbjct: 1 MASPTILSTICLVGFLLAPISNAQNSPEDFVDTHNDVRAAVGVGPVSWDDNLAVYAQNYA 60
Query: 61 DSKIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQ 120
SKIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLN+CVGDECGHYTQ
Sbjct: 61 YSKIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNQCVGDECGHYTQ 120
Query: 121 IVWRDTKHIGCGRVKCENNWVFVMCNYNPPGNYIGQYPY 160
IVWRDTK+IGC RVKCENNWVFV+C+Y PPGNY+GQYPY
Sbjct: 121 IVWRDTKNIGCARVKCENNWVFVICSYYPPGNYVGQYPY 159
BLAST of Lag0014511 vs. NCBI nr
Match:
XP_038888452.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida])
HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 143/160 (89.38%), Postives = 150/160 (93.75%), Query Frame = 0
Query: 1 MASPT-ILSTICLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNY 60
MASPT ILST+CL+ LA IS AQNSPQDFVDTHN VRA VGVGPVSWDDTLAAYAQNY
Sbjct: 1 MASPTIILSTMCLVSFFLATISKAQNSPQDFVDTHNIVRAAVGVGPVSWDDTLAAYAQNY 60
Query: 61 ADSKIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYT 120
ADSKI+TCEM+HSNGPYGENLAEGY EMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYT
Sbjct: 61 ADSKIDTCEMQHSNGPYGENLAEGYDEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYT 120
Query: 121 QIVWRDTKHIGCGRVKCENNWVFVMCNYNPPGNYIGQYPY 160
QIVWRDTK+IGC RVKCENNWVFV+CNYNPPGNYIGQ+PY
Sbjct: 121 QIVWRDTKNIGCARVKCENNWVFVICNYNPPGNYIGQHPY 160
BLAST of Lag0014511 vs. NCBI nr
Match:
XP_022972427.1 (basic form of pathogenesis-related protein 1-like [Cucurbita maxima])
HSP 1 Score: 312.0 bits (798), Expect = 3.0e-81
Identity = 141/159 (88.68%), Postives = 150/159 (94.34%), Query Frame = 0
Query: 1 MASPTILSTICLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYA 60
MAS TILSTICL+G LLAPIS AQNSP+DFVDTHN +RA VGVGPVSWD+ LAAYAQNYA
Sbjct: 1 MASHTILSTICLVGFLLAPISNAQNSPEDFVDTHNDIRAAVGVGPVSWDNNLAAYAQNYA 60
Query: 61 DSKIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQ 120
SKIETC+MEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQ
Sbjct: 61 YSKIETCKMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQ 120
Query: 121 IVWRDTKHIGCGRVKCENNWVFVMCNYNPPGNYIGQYPY 160
IVWRDTK+IGC RVKCENNWVFV+C+Y PPGNY+GQYPY
Sbjct: 121 IVWRDTKNIGCARVKCENNWVFVICSYYPPGNYVGQYPY 159
BLAST of Lag0014511 vs. NCBI nr
Match:
XP_022148797.1 (basic form of pathogenesis-related protein 1-like [Momordica charantia])
HSP 1 Score: 303.9 bits (777), Expect = 8.1e-79
Identity = 137/157 (87.26%), Postives = 146/157 (92.99%), Query Frame = 0
Query: 3 SPTILSTICLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYADS 62
SPTIL TICL+G L+AP+S+AQNSPQDFVDTHNAVRAEVGV PVSWD TLAAYAQNYA+S
Sbjct: 7 SPTILYTICLVGFLIAPLSMAQNSPQDFVDTHNAVRAEVGVWPVSWDATLAAYAQNYANS 66
Query: 63 KIETCEMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQIV 122
K ETCEM HSNGPYGENLAEGYGEMTAVEAVKFWATEKKFY+H NRCVGDECGHYTQIV
Sbjct: 67 KSETCEMVHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYDHRANRCVGDECGHYTQIV 126
Query: 123 WRDTKHIGCGRVKCENNWVFVMCNYNPPGNYIGQYPY 160
WRD+K IGC RVKCENNWVFV+CNY+PPGNYIGQ PY
Sbjct: 127 WRDSKRIGCARVKCENNWVFVICNYDPPGNYIGQLPY 163
BLAST of Lag0014511 vs. ExPASy Swiss-Prot
Match:
P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)
HSP 1 Score: 198.7 bits (504), Expect = 4.8e-50
Identity = 82/144 (56.94%), Postives = 109/144 (75.69%), Query Frame = 0
Query: 16 LLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYADSKIETCEMEHSNGP 75
+L S AQNSPQD+++ HNA R +VGVGP++WD+ LAAYAQNYA+ +I C M HS+GP
Sbjct: 16 ILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHSHGP 75
Query: 76 YGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQIVWRDTKHIGCGRVK 135
YGENLA + ++ A AVK W EK+FY+++ N CVG CGHYTQ+VWR++ +GC RV+
Sbjct: 76 YGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVR 135
Query: 136 CENNWVFVMCNYNPPGNYIGQYPY 160
N W F+ CNY+PPGN+IGQ P+
Sbjct: 136 SNNGWFFITCNYDPPGNFIGQRPF 159
BLAST of Lag0014511 vs. ExPASy Swiss-Prot
Match:
P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)
HSP 1 Score: 183.7 bits (465), Expect = 1.6e-45
Identity = 83/156 (53.21%), Postives = 109/156 (69.87%), Query Frame = 0
Query: 6 ILSTICLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYADSKIE 65
+L + LL L+++ AQNS QD++D HN RA+VGV P++WDD +AAYAQNYA
Sbjct: 13 LLVSTLLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAA 72
Query: 66 TCEMEHSNGPYGENLAEGYGE-MTAVEAVKFWATEKKFYNHHLNRCV-GDECGHYTQIVW 125
C + HS+G YGENLAEG G+ MTA +AV+ W EK++Y+H N C G CGHYTQ+VW
Sbjct: 73 DCNLVHSHGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVW 132
Query: 126 RDTKHIGCGRVKCENNWVFVMCNYNPPGNYIGQYPY 160
R++ +GC RV+C N V CNY+PPGNY G+ PY
Sbjct: 133 RNSVRVGCARVQCNNGGYVVSCNYDPPGNYRGESPY 168
BLAST of Lag0014511 vs. ExPASy Swiss-Prot
Match:
P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 2.1e-45
Identity = 86/161 (53.42%), Postives = 113/161 (70.19%), Query Frame = 0
Query: 1 MASPTILSTICLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYA 60
M S ++ST+ LL L+++ S AQNS QD++D HN RA+VGV P++WD+ +AAYAQNY
Sbjct: 9 MPSFFLVSTL-LLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYV 68
Query: 61 DSKIETCEMEHSNGPYGENLAEGYGE-MTAVEAVKFWATEKKFYNHHLNRCV-GDECGHY 120
C + HS+G YGENLA+G G+ MTA +AV+ W EK++Y+H N C G CGHY
Sbjct: 69 SQLAADCNLVHSHGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHY 128
Query: 121 TQIVWRDTKHIGCGRVKCENNWVFVMCNYNPPGNYIGQYPY 160
TQ+VWR++ +GC RVKC N V CNY+PPGN IGQ PY
Sbjct: 129 TQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVIGQSPY 168
BLAST of Lag0014511 vs. ExPASy Swiss-Prot
Match:
Q08697 (Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)
HSP 1 Score: 179.9 bits (455), Expect = 2.3e-44
Identity = 75/145 (51.72%), Postives = 103/145 (71.03%), Query Frame = 0
Query: 11 CLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYADSKIETCEME 70
C + ++ S AQ ++F++ HNA R VGVGP++WDD LAAYAQNYA+ + + C M
Sbjct: 9 CFITFIIFHSSQAQTPRENFLNAHNAARRRVGVGPMTWDDGLAAYAQNYANQRADDCGMI 68
Query: 71 HSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCV-GDECGHYTQIVWRDTKHI 130
HS+GPYGENLA + ++ A AVK W EK++Y+++ N C G CGHYTQ+VWR + +
Sbjct: 69 HSDGPYGENLAAAFPQLNAAGAVKMWDDEKQWYDYNSNTCAPGKVCGHYTQVVWRKSVRL 128
Query: 131 GCGRVKCENNWVFVMCNYNPPGNYI 155
GC RV+C + WVF+ CNY+PPGNYI
Sbjct: 129 GCARVRCNSGWVFITCNYDPPGNYI 153
BLAST of Lag0014511 vs. ExPASy Swiss-Prot
Match:
Q41359 (Pathogenesis-related protein PR-1 type OS=Sambucus nigra OX=4202 PE=2 SV=1)
HSP 1 Score: 179.9 bits (455), Expect = 2.3e-44
Identity = 81/156 (51.92%), Postives = 108/156 (69.23%), Query Frame = 0
Query: 7 LSTICLLGLLLAPISLAQNSPQDFVDTHNAVRAEVGVGPVSWDDTLAAYAQNYADSKIET 66
++ +C++ L++ S+AQNSPQD+VD HNA R+ V VGPV+WD+++AA+A+ YA S+
Sbjct: 12 VALVCVVALVMVQYSVAQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAGD 71
Query: 67 CEMEHSNGP-YGENLAEGYG-EMTAVEAVKFWATEKKFYNHHLNRCV-GDECGHYTQIVW 126
C + HS P YGENLA G G E+T AV W E+ YN + N C G CGHYTQ+VW
Sbjct: 72 CRLVHSGDPRYGENLAFGSGFELTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVW 131
Query: 127 RDTKHIGCGRVKCENNWVFVMCNYNPPGNYIGQYPY 160
R++ IGC RV+C N F+ CNY+PPGNY GQ PY
Sbjct: 132 RNSVRIGCARVRCNNGAWFITCNYSPPGNYAGQRPY 167
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022952867.1 | 9.2e-83 | 89.94 | basic form of pathogenesis-related protein 1-like [Cucurbita moschata] | [more] |
XP_023554743.1 | 1.6e-82 | 89.94 | basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo] | [more] |
XP_038888452.1 | 2.3e-81 | 89.38 | basic form of pathogenesis-related protein 1-like [Benincasa hispida] | [more] |
XP_022972427.1 | 3.0e-81 | 88.68 | basic form of pathogenesis-related protein 1-like [Cucurbita maxima] | [more] |
XP_022148797.1 | 8.1e-79 | 87.26 | basic form of pathogenesis-related protein 1-like [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
P11670 | 4.8e-50 | 56.94 | Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S... | [more] |
P08299 | 1.6e-45 | 53.21 | Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1 | [more] |
P07053 | 2.1e-45 | 53.42 | Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | [more] |
Q08697 | 2.3e-44 | 51.72 | Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | [more] |
Q41359 | 2.3e-44 | 51.92 | Pathogenesis-related protein PR-1 type OS=Sambucus nigra OX=4202 PE=2 SV=1 | [more] |