Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACATTGGCCAACCTTCTCTCCTTCATAACCCTGATGGGGCTAATCCTAGCCCCCATCACCCTAGCCCAAAACTCCCACCAAGACTTCGTCAATGCCCACAACGCCGCCCGAGCGAGAGTCGGGGTCGGTCCGGTCTCTTGGAACTACACCTTGGCTGCGTACGCCCAAACTTACGCCAACAAGAAGATTGGCACTTGCGAGCTGCAACATTCCTACGGTCCTTACGGCGAGAATCTAGCCGAAGGATACGGTGAGATGACTGCGGTGGAGGCGGTGAACTTCTGGGTGAGCGAGAAGAAGTACTACGACCATCGGTCCAACCGATGCGTCGGGGACGAGTGTCGCCATTACACACAGGTTGTGTGGAGGAACACCAAGCATGTGGGTTGTGCTAGAGTGAAATGTCACAACAATTGGATTTTTGTGATATGTAACTATGATCCTCCAGGCAATTATGTAGGCCAGCTTCCTTACTGA
mRNA sequence
ATGGCAACATTGGCCAACCTTCTCTCCTTCATAACCCTGATGGGGCTAATCCTAGCCCCCATCACCCTAGCCCAAAACTCCCACCAAGACTTCGTCAATGCCCACAACGCCGCCCGAGCGAGAGTCGGGGTCGGTCCGGTCTCTTGGAACTACACCTTGGCTGCGTACGCCCAAACTTACGCCAACAAGAAGATTGGCACTTGCGAGCTGCAACATTCCTACGGTCCTTACGGCGAGAATCTAGCCGAAGGATACGGTGAGATGACTGCGGTGGAGGCGGTGAACTTCTGGGTGAGCGAGAAGAAGTACTACGACCATCGGTCCAACCGATGCGTCGGGGACGAGTGTCGCCATTACACACAGGTTGTGTGGAGGAACACCAAGCATGTGGGTTGTGCTAGAGTGAAATGTCACAACAATTGGATTTTTGTGATATGTAACTATGATCCTCCAGGCAATTATGTAGGCCAGCTTCCTTACTGA
Coding sequence (CDS)
ATGGCAACATTGGCCAACCTTCTCTCCTTCATAACCCTGATGGGGCTAATCCTAGCCCCCATCACCCTAGCCCAAAACTCCCACCAAGACTTCGTCAATGCCCACAACGCCGCCCGAGCGAGAGTCGGGGTCGGTCCGGTCTCTTGGAACTACACCTTGGCTGCGTACGCCCAAACTTACGCCAACAAGAAGATTGGCACTTGCGAGCTGCAACATTCCTACGGTCCTTACGGCGAGAATCTAGCCGAAGGATACGGTGAGATGACTGCGGTGGAGGCGGTGAACTTCTGGGTGAGCGAGAAGAAGTACTACGACCATCGGTCCAACCGATGCGTCGGGGACGAGTGTCGCCATTACACACAGGTTGTGTGGAGGAACACCAAGCATGTGGGTTGTGCTAGAGTGAAATGTCACAACAATTGGATTTTTGTGATATGTAACTATGATCCTCCAGGCAATTATGTAGGCCAGCTTCCTTACTGA
Protein sequence
MATLANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVVWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY
Homology
BLAST of Lag0014506 vs. NCBI nr
Match:
XP_022988983.1 (basic form of pathogenesis-related protein 1-like [Cucurbita maxima])
HSP 1 Score: 327.8 bits (839), Expect = 5.3e-86
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 0
Query: 1 MATLANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTY 60
MA LANLLSFI LMGL+L PITLAQNSHQDFVNAHNAAR+RVGVGPVSWNYTLAAYAQTY
Sbjct: 1 MALLANLLSFIALMGLVLVPITLAQNSHQDFVNAHNAARSRVGVGPVSWNYTLAAYAQTY 60
Query: 61 ANKKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYT 120
ANKKIGTCE+QHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHR NRCVGDEC HYT
Sbjct: 61 ANKKIGTCEMQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRLNRCVGDECGHYT 120
Query: 121 QVVWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
QVVWRNTKHVGCARVKC NNWIFVICNYDPPGNY GQLPY
Sbjct: 121 QVVWRNTKHVGCARVKCRNNWIFVICNYDPPGNYAGQLPY 160
BLAST of Lag0014506 vs. NCBI nr
Match:
XP_023531814.1 (basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85
Identity = 149/160 (93.12%), Postives = 153/160 (95.62%), Query Frame = 0
Query: 1 MATLANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTY 60
MA LANLLSFI LMGL+L PITLAQNSHQDFVNAHNAAR+RVGVGPVSWNYTLAAYAQTY
Sbjct: 1 MALLANLLSFIALMGLVLVPITLAQNSHQDFVNAHNAARSRVGVGPVSWNYTLAAYAQTY 60
Query: 61 ANKKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYT 120
ANKKIGTCE+QHSYGPYGENLAEGY EMTAVEAVNFWVSEKKYYDHR NRC+GDEC HYT
Sbjct: 61 ANKKIGTCEMQHSYGPYGENLAEGYREMTAVEAVNFWVSEKKYYDHRLNRCIGDECGHYT 120
Query: 121 QVVWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
QVVWRNTKHVGCARVKC NNWIFVICNYDPPGNYVGQLPY
Sbjct: 121 QVVWRNTKHVGCARVKCRNNWIFVICNYDPPGNYVGQLPY 160
BLAST of Lag0014506 vs. NCBI nr
Match:
XP_038888600.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida])
HSP 1 Score: 325.5 bits (833), Expect = 2.6e-85
Identity = 150/158 (94.94%), Postives = 154/158 (97.47%), Query Frame = 0
Query: 4 LANLLSFITLMGLI-LAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYAN 63
L LLSFITLMG+I LAPITLAQNSHQDFVNAHNAARA+VGVGPVSWNYTLAAYAQTYAN
Sbjct: 3 LLKLLSFITLMGIITLAPITLAQNSHQDFVNAHNAARAKVGVGPVSWNYTLAAYAQTYAN 62
Query: 64 KKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQV 123
KKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKK+YDHRSNRC+GDECRHYTQV
Sbjct: 63 KKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKFYDHRSNRCIGDECRHYTQV 122
Query: 124 VWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
VWR TKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY
Sbjct: 123 VWRGTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 160
BLAST of Lag0014506 vs. NCBI nr
Match:
XP_022927847.1 (basic form of pathogenesis-related protein 1-like [Cucurbita moschata])
HSP 1 Score: 325.1 bits (832), Expect = 3.4e-85
Identity = 148/160 (92.50%), Postives = 154/160 (96.25%), Query Frame = 0
Query: 1 MATLANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTY 60
MA LANLLSF+ LMGL+L PITLAQNSHQDFVNAHNAAR+RVGVGPVSWNYTLAAYAQTY
Sbjct: 1 MALLANLLSFLALMGLVLVPITLAQNSHQDFVNAHNAARSRVGVGPVSWNYTLAAYAQTY 60
Query: 61 ANKKIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYT 120
ANKKIGTC++QHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHR NRCVGDEC HYT
Sbjct: 61 ANKKIGTCKMQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRLNRCVGDECGHYT 120
Query: 121 QVVWRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
QVVWRNTKHVGCARVKC NNWIFVIC+YDPPGNYVGQLPY
Sbjct: 121 QVVWRNTKHVGCARVKCRNNWIFVICSYDPPGNYVGQLPY 160
BLAST of Lag0014506 vs. NCBI nr
Match:
XP_022158625.1 (basic form of pathogenesis-related protein 1-like [Momordica charantia])
HSP 1 Score: 324.7 bits (831), Expect = 4.5e-85
Identity = 147/157 (93.63%), Postives = 153/157 (97.45%), Query Frame = 0
Query: 4 LANLLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANK 63
LANLLS ITL+G+ LAP+T+AQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANK
Sbjct: 6 LANLLSAITLLGVTLAPLTMAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANK 65
Query: 64 KIGTCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVV 123
KIGTCELQHSYGPYGENL+EGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVV
Sbjct: 66 KIGTCELQHSYGPYGENLSEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVV 125
Query: 124 WRNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
WR+TKHVGCARVKCHNNWIFVICNYDPPGNY GQ PY
Sbjct: 126 WRDTKHVGCARVKCHNNWIFVICNYDPPGNYQGQFPY 162
BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match:
P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)
HSP 1 Score: 201.1 bits (510), Expect = 9.7e-51
Identity = 88/151 (58.28%), Postives = 113/151 (74.83%), Query Frame = 0
Query: 10 FITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIGTCE 69
FIT IL + AQNS QD++N HNAAR +VGVGP++W+ LAAYAQ YAN++IG C
Sbjct: 11 FITF--AILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCG 70
Query: 70 LQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVVWRNTKH 129
+ HS+GPYGENLA + ++ A AV WV EK++YD+ SN CVG C HYTQVVWRN+
Sbjct: 71 MIHSHGPYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVR 130
Query: 130 VGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
+GCARV+ +N W F+ CNYDPPGN++GQ P+
Sbjct: 131 LGCARVRSNNGWFFITCNYDPPGNFIGQRPF 159
BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match:
P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 187.6 bits (475), Expect = 1.1e-46
Identity = 88/150 (58.67%), Postives = 109/150 (72.67%), Query Frame = 0
Query: 13 LMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIGTCELQH 72
L+ LI++ + AQNS QD+++AHN ARA VGV P++W+ +AAYAQ Y ++ C L H
Sbjct: 19 LLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVH 78
Query: 73 SYGPYGENLAEGYGE-MTAVEAVNFWVSEKKYYDHRSNRCV-GDECRHYTQVVWRNTKHV 132
S+G YGENLA+G G+ MTA +AV WV EK+YYDH SN C G C HYTQVVWRN+ V
Sbjct: 79 SHGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRV 138
Query: 133 GCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
GCARVKC+N V CNYDPPGN +GQ PY
Sbjct: 139 GCARVKCNNGGYVVSCNYDPPGNVIGQSPY 168
BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match:
P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)
HSP 1 Score: 187.2 bits (474), Expect = 1.5e-46
Identity = 90/156 (57.69%), Postives = 111/156 (71.15%), Query Frame = 0
Query: 7 LLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIG 66
LL L+ L+++ AQNS QD+++AHN ARA VGV P++W+ +AAYAQ YA++
Sbjct: 13 LLVSTLLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAA 72
Query: 67 TCELQHSYGPYGENLAEGYGE-MTAVEAVNFWVSEKKYYDHRSNRCV-GDECRHYTQVVW 126
C L HS+G YGENLAEG G+ MTA +AV WV EK+YYDH SN C G C HYTQVVW
Sbjct: 73 DCNLVHSHGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVW 132
Query: 127 RNTKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
RN+ VGCARV+C+N V CNYDPPGNY G+ PY
Sbjct: 133 RNSVRVGCARVQCNNGGYVVSCNYDPPGNYRGESPY 168
BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match:
Q9ZNS4 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 2.1e-45
Identity = 83/154 (53.90%), Postives = 111/154 (72.08%), Query Frame = 0
Query: 7 LLSFITLMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIG 66
L+ L+G ++ P+ AQ+S QD+VNAHN AR+++GVGP+ W+ LAAYA+ YAN+ G
Sbjct: 10 LIILAALVGALVVPLK-AQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKG 69
Query: 67 TCELQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRSNRCVGDECRHYTQVVWRN 126
C L HS GPYGENLA+ G+++ V AVN WV+EK Y++ +N C G C HYTQVVWRN
Sbjct: 70 DCRLVHSRGPYGENLAKSGGDLSGVAAVNLWVNEKANYNYDTNTCNG-VCGHYTQVVWRN 129
Query: 127 TKHVGCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
+ +GCA+V+C+N + CNYDPPGNY Q PY
Sbjct: 130 SVRLGCAKVRCNNGGTIISCNYDPPGNYANQKPY 161
BLAST of Lag0014506 vs. ExPASy Swiss-Prot
Match:
P09042 (Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3)
HSP 1 Score: 179.9 bits (455), Expect = 2.3e-44
Identity = 85/150 (56.67%), Postives = 108/150 (72.00%), Query Frame = 0
Query: 13 LMGLILAPITLAQNSHQDFVNAHNAARARVGVGPVSWNYTLAAYAQTYANKKIGTCELQH 72
L+ LI++ AQNS QD+++AHN ARA VGV P++W+ +AAYAQ YA++ C L H
Sbjct: 19 LLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVH 78
Query: 73 SYGPYGENLAEGYGE-MTAVEAVNFWVSEKKYYDHRSNRCV-GDECRHYTQVVWRNTKHV 132
S+G YGENLA G G+ +TA +AV WV+EK+YY H SN C G C HYTQVVWRN+ V
Sbjct: 79 SHGQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRV 138
Query: 133 GCARVKCHNNWIFVICNYDPPGNYVGQLPY 161
GCARV+C+N V CNYDPPGN +G+ PY
Sbjct: 139 GCARVQCNNGGYIVSCNYDPPGNVIGKSPY 168
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022988983.1 | 5.3e-86 | 93.75 | basic form of pathogenesis-related protein 1-like [Cucurbita maxima] | [more] |
XP_023531814.1 | 2.0e-85 | 93.13 | basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo] | [more] |
XP_038888600.1 | 2.6e-85 | 94.94 | basic form of pathogenesis-related protein 1-like [Benincasa hispida] | [more] |
XP_022927847.1 | 3.4e-85 | 92.50 | basic form of pathogenesis-related protein 1-like [Cucurbita moschata] | [more] |
XP_022158625.1 | 4.5e-85 | 93.63 | basic form of pathogenesis-related protein 1-like [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
P11670 | 9.7e-51 | 58.28 | Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S... | [more] |
P07053 | 1.1e-46 | 58.67 | Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | [more] |
P08299 | 1.5e-46 | 57.69 | Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1 | [more] |
Q9ZNS4 | 2.1e-45 | 53.90 | Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1 | [more] |
P09042 | 2.3e-44 | 56.67 | Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3 | [more] |