Lag0014478 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014478
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CYSTM domain-containing protein
Location	chr12: 1216538 .. 1217420 (-)
RNA-Seq Expression	Lag0014478
Synteny	Lag0014478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGACCCCAAATATGCCTATCCCTACCCAGCTCCTCAAGGTATTTTTCACGTATCATCTGTCGTTAGTGTCTTAACCTTTAAGCTATGTTCAGATTGGTTTCTCTATTTGAGTTTTCGTTTGATTTAGTCTTTTGGGTGTTGTGACTTCTTTTCACAGGAGGTTATTATCAAGGGCCGCCGGTGATGGCACCGCCGCAGTACGCCGCACCGCCGCCCAAAAGACAGCCAGGCTTCTTGGAGGGATGGTATGTCAAAGCTTATTCTTTTATGTTGATAAGAATGGAACTTATATCAAAAGTGAAGGTTAGAATTGAGGGTGTTGGGAAAATAAGGAGTAGATGAAATAATCTAAGGAATATAAAAAAAAAAAAAACGACACCGATATTTATACTGGTTCGTCAATTGTAAAACCACGTCTAATTTATGCTAACGTTTTAGATTTATAGACACTCTCTTCACGCTTCTCCCCTCTATTTCTTTCTCACACACAAGCCCTTAGAAAATAGGTCGTCGTTATTATAAAGAATCACGTGCGGGCGTCTAGGCGCTACGAATATAATAGAACATTCTGCCATCGAATTGGTGTCTCGACACCCTCCTCTCGAGCTCTTAAACATCGCAAAGCGACAGCGCGGGAAGCCTAGGCACTTCGAACTTTGAATCGCACACACCTTTTCTTTGTCATCTCTATTTTTGCCTTCATATGCCTAACAAAAGGTTAAATTTTTTGTGTTGTTGCAGCCTTGCAGCCCTGTGCTGCTGCTGTCTCCTTGATGAGTGTTGCTGTGACCCTTCCATTATCTTTGTTGCTTGATCTGAGCTTTGATTTTGCCTTACACACTTCTCTTTTTCTTAGGGAGTGGTTTGATTTTGTGTAA

mRNA sequence

ATGAGTGACCCCAAATATGCCTATCCCTACCCAGCTCCTCAAGGAGGTTATTATCAAGGGCCGCCGGTGATGGCACCGCCGCAGTACGCCGCACCGCCGCCCAAAAGACAGCCAGGCTTCTTGGAGGGATGGTATGTCAAAGCTTATTCTTTTATGTTGATAAGAATGGAACTTATATCAAAAGTGAAGCCCTGTGCTGCTGCTGTCTCCTTGATGAGTGTTGCTGTGACCCTTCCATTATCTTTGTTGCTTGATCTGAGCTTTGATTTTGCCTTACACACTTCTCTTTTTCTTAGGGAGTGGTTTGATTTTGTGTAA

Coding sequence (CDS)

ATGAGTGACCCCAAATATGCCTATCCCTACCCAGCTCCTCAAGGAGGTTATTATCAAGGGCCGCCGGTGATGGCACCGCCGCAGTACGCCGCACCGCCGCCCAAAAGACAGCCAGGCTTCTTGGAGGGATGGTATGTCAAAGCTTATTCTTTTATGTTGATAAGAATGGAACTTATATCAAAAGTGAAGCCCTGTGCTGCTGCTGTCTCCTTGATGAGTGTTGCTGTGACCCTTCCATTATCTTTGTTGCTTGATCTGAGCTTTGATTTTGCCTTACACACTTCTCTTTTTCTTAGGGAGTGGTTTGATTTTGTGTAA

Protein sequence

MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYVKAYSFMLIRMELISKVKPCAAAVSLMSVAVTLPLSLLLDLSFDFALHTSLFLREWFDFV

Homology

[Close]

BLAST of Lag0014478 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 9.3e-23
Identity = 64/99 (64.65%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWY---------VKAYSF 60
          MSDPKYAYPYP PQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGW+          + ++F
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 61 MLIRMELISKVKPCAAAVSLMSVAVTLPLSLLLDLSFDF 91
          +   ++L       AAAVSLM+ AVTLPLS LLD   DF
Sbjct: 61 VFAALQLY------AAAVSLMNAAVTLPLSFLLDAMRDF 93

[Close]

BLAST of Lag0014478 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 9.9e-17
Identity = 58/105 (55.24%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 1   MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYVKAYSFMLIRMELIS 60
           MSDPKYAYPYP PQGGYYQGPPVMAPPQYAAPPP+RQP                      
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPA--------------------- 60

Query: 61  KVKPCAAAVSLMSVAVTLPLSLLLDLSFD---FALHTSLFLREWF 103
            ++  AAAVSLM+ AVTLPLS LLD   +   F  HT +F+  +F
Sbjct: 61  -LQLYAAAVSLMNAAVTLPLSFLLDAMREFIAFVAHTHVFINTFF 83

[Close]

BLAST of Lag0014478 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-15
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEG 44
          MSDPKYAYPYP P GGYYQGPPVMAPPQYAAPPPKRQPGFLEG
Sbjct: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEG 43

[Close]

BLAST of Lag0014478 vs. NCBI nr
Match: KAF9609677.1 (hypothetical protein IFM89_017856 [Coptis chinensis])

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEG 44
          M+DPKYAYPYP P  GYYQGPPVMAPPQYAAPPP+RQPGFLEG
Sbjct: 1  MNDPKYAYPYPYPAQGYYQGPPVMAPPQYAAPPPRRQPGFLEG 43

[Close]

BLAST of Lag0014478 vs. NCBI nr
Match: BAT99398.1 (hypothetical protein VIGAN_10082700 [Vigna angularis var. angularis])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQ-YAAPPPKRQPGFLEGWYVKAYSFMLI 55
          MSDPKYAYPYPA   GYYQGPPVMAPPQ YAAPPP+RQ GFLEGW V    F L+
Sbjct: 1  MSDPKYAYPYPAQGQGYYQGPPVMAPPQYYAAPPPRRQTGFLEGWLVPFTLFPLL 55

The following BLAST results are available for this feature:

BLAST of Lag0014478 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031406.1	9.3e-23	64.65	cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v...	[more]
KGN43811.1	9.9e-17	55.24	hypothetical protein Csa_017361 [Cucumis sativus]	[more]
KAG6571885.1	7.1e-15	95.35	hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF9609677.1	3.9e-13	88.37	hypothetical protein IFM89_017856 [Coptis chinensis]	[more]
BAT99398.1	1.1e-12	76.36	hypothetical protein VIGAN_10082700 [Vigna angularis var. angularis]	[more]

BLAST of Lag0014478 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..65
None	No IPR available	PANTHER	PTHR31568:SF72	ADHESIVE/PROLINE-RICH-LIKE PROTEIN	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014478.1	Lag0014478.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane