Lag0014143 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014143
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 55619670 .. 55620221 (+)
RNA-Seq Expression	Lag0014143
Synteny	Lag0014143

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGAATATCACTTCCCCACTTCCCTACATAAATTAACCAACAGAGACTTCCAACTCAAATTGCTCTGTAACCATCTCGTCTCCGTCGCCTTCCACTTTCCAAATTTCGCCGCTCTTTGCTCTGCAACTTCAACTTCAACTTCACCTTCTCCTTCACCTTCAACTCACATGACGCAAATGTGGCTTCTCTGGTGGCCGAAGAACGCCTCCTCCGGCGCCAAAACTAGCACATCCTCCGCCACCGGTGCCGTAACTGCGACTTCTCTCGCCAGGAAGGCATCCTCCTCGCACTGCAACCGCGTAGCCAAACTGTTGCGCAAACTGAAGAAACGTGGCAGAGTACTCTGTAGCACCAATGGAGACAGCAGCAGCACCTTCCAATGCCGCTACGATCCTTTGAGTTACTCTCTCAACTTCGACACCAGCGGCTGCGGAAGCTTGTTAGACGAACATCACTATCAGTTCTGCGCTTTCTCCTCCAGATTCGCGTCCAATCCAGGAAATGTTCCTCATCCTGCTCCTGATGTAACAGTCACTGCTTCTCGCTAG

mRNA sequence

ATGCGTGAATATCACTTCCCCACTTCCCTACATAAATTAACCAACAGAGACTTCCAACTCAAATTGCTCTGTAACCATCTCGTCTCCGTCGCCTTCCACTTTCCAAATTTCGCCGCTCTTTGCTCTGCAACTTCAACTTCAACTTCACCTTCTCCTTCACCTTCAACTCACATGACGCAAATGTGGCTTCTCTGGTGGCCGAAGAACGCCTCCTCCGGCGCCAAAACTAGCACATCCTCCGCCACCGGTGCCGTAACTGCGACTTCTCTCGCCAGGAAGGCATCCTCCTCGCACTGCAACCGCGTAGCCAAACTGTTGCGCAAACTGAAGAAACGTGGCAGAGTACTCTGTAGCACCAATGGAGACAGCAGCAGCACCTTCCAATGCCGCTACGATCCTTTGAGTTACTCTCTCAACTTCGACACCAGCGGCTGCGGAAGCTTGTTAGACGAACATCACTATCAGTTCTGCGCTTTCTCCTCCAGATTCGCGTCCAATCCAGGAAATGTTCCTCATCCTGCTCCTGATGTAACAGTCACTGCTTCTCGCTAG

Coding sequence (CDS)

ATGCGTGAATATCACTTCCCCACTTCCCTACATAAATTAACCAACAGAGACTTCCAACTCAAATTGCTCTGTAACCATCTCGTCTCCGTCGCCTTCCACTTTCCAAATTTCGCCGCTCTTTGCTCTGCAACTTCAACTTCAACTTCACCTTCTCCTTCACCTTCAACTCACATGACGCAAATGTGGCTTCTCTGGTGGCCGAAGAACGCCTCCTCCGGCGCCAAAACTAGCACATCCTCCGCCACCGGTGCCGTAACTGCGACTTCTCTCGCCAGGAAGGCATCCTCCTCGCACTGCAACCGCGTAGCCAAACTGTTGCGCAAACTGAAGAAACGTGGCAGAGTACTCTGTAGCACCAATGGAGACAGCAGCAGCACCTTCCAATGCCGCTACGATCCTTTGAGTTACTCTCTCAACTTCGACACCAGCGGCTGCGGAAGCTTGTTAGACGAACATCACTATCAGTTCTGCGCTTTCTCCTCCAGATTCGCGTCCAATCCAGGAAATGTTCCTCATCCTGCTCCTGATGTAACAGTCACTGCTTCTCGCTAG

Protein sequence

MREYHFPTSLHKLTNRDFQLKLLCNHLVSVAFHFPNFAALCSATSTSTSPSPSPSTHMTQMWLLWWPKNASSGAKTSTSSATGAVTATSLARKASSSHCNRVAKLLRKLKKRGRVLCSTNGDSSSTFQCRYDPLSYSLNFDTSGCGSLLDEHHYQFCAFSSRFASNPGNVPHPAPDVTVTASR

Homology

[Close]

BLAST of Lag0014143 vs. NCBI nr
Match: XP_023518962.1 (uncharacterized protein LOC111782330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.2 bits (570), Expect = 9.4e-55
Identity = 111/126 (88.10%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 58  MTQMWLLWWPKNASSGAKTSTSSATGAVTATSLARKASSSHCNRVAKLLRKLKKRGRVLC 117
           M QMWLLWWPKN+S+ AKTSTSSATGAVTATSLA K SSSHCNR+AKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATGAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 118 STNGDSSSTFQCRYDPLSYSLNFDTSGCGSLLDEHHYQFCAFSSRFASNPGNVPHPAPDV 177
           ST G+SSS FQCRYDPLSYSLNFDTSGCGSLLDEH+YQFCAFSSRFASNPG V  PAPD 
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120

Query: 178 TVTASR 184
           TVTASR
Sbjct: 121 TVTASR 126

[Close]

BLAST of Lag0014143 vs. NCBI nr
Match: KAG7026395.1 (hypothetical protein SDJN02_10395, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.9 bits (564), Expect = 4.6e-54
Identity = 110/126 (87.30%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 58  MTQMWLLWWPKNASSGAKTSTSSATGAVTATSLARKASSSHCNRVAKLLRKLKKRGRVLC 117
           M QMWLLWWPKN+S+ AKTSTSSAT AVTATSLA K SSSHCNR+AKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 118 STNGDSSSTFQCRYDPLSYSLNFDTSGCGSLLDEHHYQFCAFSSRFASNPGNVPHPAPDV 177
           ST G+SSS FQCRYDPLSYSLNFDTSGCGSLLDEH+YQFCAFSSRFASNPG V  PAPD 
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120

Query: 178 TVTASR 184
           TVTASR
Sbjct: 121 TVTASR 126

[Close]

BLAST of Lag0014143 vs. NCBI nr
Match: XP_022926526.1 (uncharacterized protein LOC111433647 [Cucurbita moschata])

HSP 1 Score: 220.3 bits (560), Expect = 1.4e-53
Identity = 109/126 (86.51%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 58  MTQMWLLWWPKNASSGAKTSTSSATGAVTATSLARKASSSHCNRVAKLLRKLKKRGRVLC 117
           M QMWLLWWPKN+S+ AKTSTSSAT AVTATSLA K SSSHCNR+AKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 118 STNGDSSSTFQCRYDPLSYSLNFDTSGCGSLLDEHHYQFCAFSSRFASNPGNVPHPAPDV 177
           ST G+SSS FQCRYDPLSYSLNFDTSGCGSLLDEH+YQFC FSSRFASNPG V  PAPD 
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCTFSSRFASNPGTVSRPAPDG 120

Query: 178 TVTASR 184
           TVTASR
Sbjct: 121 TVTASR 126

[Close]

BLAST of Lag0014143 vs. NCBI nr
Match: XP_023003625.1 (uncharacterized protein LOC111497167 [Cucurbita maxima])

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-53
Identity = 108/126 (85.71%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 58  MTQMWLLWWPKNASSGAKTSTSSATGAVTATSLARKASSSHCNRVAKLLRKLKKRGRVLC 117
           M QMWLLWWPKN+S+ AK+ST SATGAV+ATSLA K SSSHCNR+AKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 118 STNGDSSSTFQCRYDPLSYSLNFDTSGCGSLLDEHHYQFCAFSSRFASNPGNVPHPAPDV 177
           ST G+SSS FQCRYDPLSYSLNFDTSGCGSLLDEH+YQFCAFSSRFASNPG V  PAPD 
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120

Query: 178 TVTASR 184
           TVTASR
Sbjct: 121 TVTASR 126

[Close]

BLAST of Lag0014143 vs. NCBI nr
Match: KAG6594391.1 (hypothetical protein SDJN03_10944, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.4 bits (555), Expect = 5.1e-53
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 61  MWLLWWPKNASSGAKTSTSSATGAVTATSLARKASSSHCNRVAKLLRKLKKRGRVLCSTN 120
           MWLLWWPKN+S+ AKTSTSSAT AVTATSLA K SSSHCNR+AKLLRKLKKRGRVLCST 
Sbjct: 1   MWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCSTT 60

Query: 121 GDSSSTFQCRYDPLSYSLNFDTSGCGSLLDEHHYQFCAFSSRFASNPGNVPHPAPDVTVT 180
           G+SSS FQCRYDPLSYSLNFDTSGCGSLLDEH+YQFCAFSSRFASNPG V  PAPD TVT
Sbjct: 61  GESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGTVT 120

Query: 181 ASR 184
           ASR
Sbjct: 121 ASR 123

The following BLAST results are available for this feature:

BLAST of Lag0014143 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518962.1	9.4e-55	88.10	uncharacterized protein LOC111782330 [Cucurbita pepo subsp. pepo]	[more]
KAG7026395.1	4.6e-54	87.30	hypothetical protein SDJN02_10395, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022926526.1	1.4e-53	86.51	uncharacterized protein LOC111433647 [Cucurbita moschata]	[more]
XP_023003625.1	3.0e-53	85.71	uncharacterized protein LOC111497167 [Cucurbita maxima]	[more]
KAG6594391.1	5.1e-53	87.80	hypothetical protein SDJN03_10944, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0014143 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 58..167
None	No IPR available	PANTHER	PTHR33168:SF42	EXPRESSED PROTEIN	coord: 58..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014143.1	Lag0014143.1	mRNA