Lag0014070 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014070
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-damage-repair/toleration protein DRT111, chloroplastic-like
Location	chr1: 55027775 .. 55028635 (+)
RNA-Seq Expression	Lag0014070
Synteny	Lag0014070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGGTGGGTTGTATGGAGACCTCCCTCCGCCCTCTTCGGCGGAGGAAGATAAGCCTAGCAATTCTACCGTCTGGTCGAGCAGCACAAAAATGGCGCCGCCGACCCTACGTAAGCCATCGTCCGTCTTCGCGCCGCAGACTGTTCTTAGATCGCAAAGCAAAGTAAAAGCAGCCACCTCGACGCTCCCGAAGGCTTTGGTGTCAGCGCCGGTGGAGCCGTCTCAGCCGATTCTGGCCGAGGCCATCACGCAACCGGCATTGGTGGCTGTTACGTCGACTGTTATAGAAGAGTACGATCCAGCGAGGCCGAATGACTACGAGGAGTATAGGGTGGAGAAGAAGAGAAAGGCCATGGAGGCTGAGATGAGGAAGGAGCTTGAGAGGCGGAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGAGCGAGAAAGAGAATATTCTGATTCTAGGTTAAATATTTCAGGGGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCGCCATCACCACCAAGCAGCGCAGACGGCTTCAGCATTGGAAAGTCGGAGACTGGCGGCTTGGGAGTTGGGGCTGGTGGGCAGATGACAGCGGCTCAAAGAATGATGGCTAAGATGGGGTGGAAAGAGGGGCAAGGGCTCGGGAAGCAGGAACAAGGGATTACCACCCCTCTGATGGCAAAAAAGACAGACTTGCGTGCTGGAGTAATTGTGAACGCTAATGATACGAAATCAGAGAAGAAGGTGAAGAGTGTCAACTTCAACGGGCTACCTACTCGGGTTCTTCTGCTCAGAAACATGGTACGGTATTGTAGAATCCTGACATTTTTGTCGGCTTGA

mRNA sequence

ATGCTCGGTGGGTTGTATGGAGACCTCCCTCCGCCCTCTTCGGCGGAGGAAGATAAGCCTAGCAATTCTACCGTCTGGTCGAGCAGCACAAAAATGGCGCCGCCGACCCTACGTAAGCCATCGTCCGTCTTCGCGCCGCAGACTGTTCTTAGATCGCAAAGCAAAGTAAAAGCAGCCACCTCGACGCTCCCGAAGGCTTTGGTGTCAGCGCCGGTGGAGCCGTCTCAGCCGATTCTGGCCGAGGCCATCACGCAACCGGCATTGGTGGCTGTTACGTCGACTGTTATAGAAGAGTACGATCCAGCGAGGCCGAATGACTACGAGGAGTATAGGGTGGAGAAGAAGAGAAAGGCCATGGAGGCTGAGATGAGGAAGGAGCTTGAGAGGCGGAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGAGCGAGAAAGAGAATATTCTGATTCTAGGTTAAATATTTCAGGGGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCGCCATCACCACCAAGCAGCGCAGACGGCTTCAGCATTGGAAAGTCGGAGACTGGCGGCTTGGGAGTTGGGGCTGGTGGGCAGATGACAGCGGCTCAAAGAATGATGGCTAAGATGGGGTGGAAAGAGGGGCAAGGGCTCGGGAAGCAGGAACAAGGGATTACCACCCCTCTGATGGCAAAAAAGACAGACTTGCGTGCTGGAGTAATTGTGAACGCTAATGATACGAAATCAGAGAAGAAGGTGAAGAGTGTCAACTTCAACGGGCTACCTACTCGGGTTCTTCTGCTCAGAAACATGGTACGGTATTGTAGAATCCTGACATTTTTGTCGGCTTGA

Coding sequence (CDS)

ATGCTCGGTGGGTTGTATGGAGACCTCCCTCCGCCCTCTTCGGCGGAGGAAGATAAGCCTAGCAATTCTACCGTCTGGTCGAGCAGCACAAAAATGGCGCCGCCGACCCTACGTAAGCCATCGTCCGTCTTCGCGCCGCAGACTGTTCTTAGATCGCAAAGCAAAGTAAAAGCAGCCACCTCGACGCTCCCGAAGGCTTTGGTGTCAGCGCCGGTGGAGCCGTCTCAGCCGATTCTGGCCGAGGCCATCACGCAACCGGCATTGGTGGCTGTTACGTCGACTGTTATAGAAGAGTACGATCCAGCGAGGCCGAATGACTACGAGGAGTATAGGGTGGAGAAGAAGAGAAAGGCCATGGAGGCTGAGATGAGGAAGGAGCTTGAGAGGCGGAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGAGCGAGAAAGAGAATATTCTGATTCTAGGTTAAATATTTCAGGGGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCGCCATCACCACCAAGCAGCGCAGACGGCTTCAGCATTGGAAAGTCGGAGACTGGCGGCTTGGGAGTTGGGGCTGGTGGGCAGATGACAGCGGCTCAAAGAATGATGGCTAAGATGGGGTGGAAAGAGGGGCAAGGGCTCGGGAAGCAGGAACAAGGGATTACCACCCCTCTGATGGCAAAAAAGACAGACTTGCGTGCTGGAGTAATTGTGAACGCTAATGATACGAAATCAGAGAAGAAGGTGAAGAGTGTCAACTTCAACGGGCTACCTACTCGGGTTCTTCTGCTCAGAAACATGGTACGGTATTGTAGAATCCTGACATTTTTGTCGGCTTGA

Protein sequence

MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAATSTLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAMEAEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPSSADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVRYCRILTFLSA

Homology

[Close]

BLAST of Lag0014070 vs. NCBI nr
Match: XP_038882071.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida])

HSP 1 Score: 484.2 bits (1245), Expect = 7.8e-133
Identity = 267/275 (97.09%), Postives = 270/275 (98.18%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA VSAPVEPSQPILAE I QPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEVIAQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREYSDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 275

[Close]

BLAST of Lag0014070 vs. NCBI nr
Match: XP_023003194.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 481.5 bits (1238), Expect = 5.1e-132
Identity = 267/275 (97.09%), Postives = 269/275 (97.82%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSKVK AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA VSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMV
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMV 275

[Close]

BLAST of Lag0014070 vs. NCBI nr
Match: KAG6594427.1 (DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026427.1 DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 476.9 bits (1226), Expect = 1.3e-130
Identity = 264/275 (96.00%), Postives = 268/275 (97.45%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSKVK AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA VSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AE RKELERRRQEEEEREKKEREERERE+SDSRLNISGEEAWRRRAAKSGA+PRSPSPPS
Sbjct: 121 AETRKELERRRQEEEEREKKEREEREREHSDSRLNISGEEAWRRRAAKSGAVPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMV
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMV 275

[Close]

BLAST of Lag0014070 vs. NCBI nr
Match: XP_022146691.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia])

HSP 1 Score: 476.5 bits (1225), Expect = 1.6e-130
Identity = 264/275 (96.00%), Postives = 269/275 (97.82%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA  SA VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYR+EKKRKAME
Sbjct: 61  STHPKASASASVEQSQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRMEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERER+YSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERERDYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           +ADGF+IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 AADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKKVKSVNFNG PTRVLLLRNMV
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMV 275

[Close]

BLAST of Lag0014070 vs. NCBI nr
Match: XP_004134609.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus] >KGN49456.1 hypothetical protein Csa_003083 [Cucumis sativus])

HSP 1 Score: 476.1 bits (1224), Expect = 2.1e-130
Identity = 263/275 (95.64%), Postives = 268/275 (97.45%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PK  VS  VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERERE+SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 275

[Close]

BLAST of Lag0014070 vs. ExPASy Swiss-Prot
Match: P42698 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT111 PE=1 SV=2)

HSP 1 Score: 324.3 bits (830), Expect = 1.4e-87
Identity = 201/299 (67.22%), Postives = 229/299 (76.59%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPP+  E+   ++S+VWSSSTKMAPPTLRKP +   PQT+LR  +K     
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNK----- 60

Query: 61  STLPKALVSAPVEP------SQPILAEA-----ITQPALVAVTSTVIEEYDPARPNDYEE 120
              PK +VSAP +P      SQ +L  A       QPALV VTS+VIEEYDPARPNDYEE
Sbjct: 61  ---PKPIVSAPYKPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEE 120

Query: 121 YRVEKKRKAMEAEMRKELERRRQEEEEREKKEREERERE-----YSDSRLNISGEEAWRR 180
           Y+ EKKRKA EAEM++E+++RRQE+EER+K+EREERE+E        SRLNISGEEAW+R
Sbjct: 121 YKREKKRKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKR 180

Query: 181 RAAK----SGAIPRSPSPPSSADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQG 240
           RAA     SG   RS SPP + DGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQG
Sbjct: 181 RAAMSGGGSGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQG 240

Query: 241 LGKQEQGITTPLMAKKTDLRAGVIVNANDTKS----EKKVKSVNFNGLPTRVLLLRNMV 276
           LGK EQGITTPLMAKKTD RAGVIVNA++ KS    +K VKSVN NG PTRVLLLRNMV
Sbjct: 241 LGKSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMV 291

[Close]

BLAST of Lag0014070 vs. ExPASy Swiss-Prot
Match: Q96I25 (Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-06
Identity = 96/321 (29.91%), Postives = 142/321 (44.24%), Query Frame = 0


Query: 5   LYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLR-KPSSVFAPQTVLRSQSKVKAATSTL 64
           LY DL       E   S +  WS + K+    L+ K +++   ++    QS V A    L
Sbjct: 3   LYDDL-----GVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDL 62

Query: 65  PKALVS--APVEPSQPILAEAITQP-----ALVAVTSTVIEEYDPARPNDYEEYRVEKKR 124
            +   S    +  + P +A  +  P     +   V   + +EYDP  PNDYE+     KR
Sbjct: 63  KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV---VKR 122

Query: 125 KAMEAEMRKELERRRQ-EEEEREKKEREE----REREYSDSRLNISGEEAWRRRAAKSGA 184
           +  E + ++ELER+++ EE E+ +K+R E      R   DS  +   E   R+R+    A
Sbjct: 123 QREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAA 182

Query: 185 I------------------------PRSPS-----PPSSADGFSIGKSETG---GLGVGA 244
           I                        PRS S     PP   +     +S TG         
Sbjct: 183 IAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANM 242

Query: 245 GGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDTKSEKKVKS- 276
           GG  T A ++M K G++EGQGLGK EQG++T L  +KT  R G I+  + T+ +   KS 
Sbjct: 243 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSD 302

[Close]

BLAST of Lag0014070 vs. ExPASy Swiss-Prot
Match: Q8JZX4 (Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.0e-05
Identity = 97/325 (29.85%), Postives = 145/325 (44.62%), Query Frame = 0


Query: 5   LYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLR-KPSSVFAPQTVLRSQSKVKAATSTL 64
           LY DL       E   S +  WS + K+    L+ K +++   ++    QS V A    L
Sbjct: 3   LYDDL-----GVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDL 62

Query: 65  PKALVS--APVEPSQPILAEAITQP-----ALVAVTSTVIEEYDPARPNDYEEYRVEKKR 124
            +   S    +  + P +A  +  P     +   V   + +EYDP  PNDYE+     KR
Sbjct: 63  KRGGSSDDRQIADTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV---VKR 122

Query: 125 KAMEAEMRKELERRRQ-EEEEREKKEREE----REREYSDSRLNISGEEAWRRRAAKSGA 184
           +  E + ++ELER+++ EE E+ +K+R E      R   DS  +   E   R+R+    A
Sbjct: 123 QREERQRQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAA 182

Query: 185 I------------------------PRSPS-----PPSSADGFSIGKSETG---GLGVGA 244
           I                        PRS S     PP   +     +S TG         
Sbjct: 183 IAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANM 242

Query: 245 GGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDT---KSEKKV 276
           GG  T A ++M K G++EGQGLGK EQG++T L  +KT  R G I+  + T   +++   
Sbjct: 243 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDAS 302

[Close]

BLAST of Lag0014070 vs. ExPASy TrEMBL
Match: A0A6J1KSL4 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111496883 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.5e-132
Identity = 267/275 (97.09%), Postives = 269/275 (97.82%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSKVK AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA VSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMV
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMV 275

[Close]

BLAST of Lag0014070 vs. ExPASy TrEMBL
Match: A0A6J1D044 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015835 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 7.9e-131
Identity = 264/275 (96.00%), Postives = 269/275 (97.82%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PKA  SA VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYR+EKKRKAME
Sbjct: 61  STHPKASASASVEQSQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRMEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERER+YSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERERDYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           +ADGF+IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 AADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKKVKSVNFNG PTRVLLLRNMV
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMV 275

[Close]

BLAST of Lag0014070 vs. ExPASy TrEMBL
Match: A0A0A0KP45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 1.0e-130
Identity = 263/275 (95.64%), Postives = 268/275 (97.45%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PK  VS  VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERERE+SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 275

[Close]

BLAST of Lag0014070 vs. ExPASy TrEMBL
Match: A0A1S3AYL8 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484318 PE=4 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 2.0e-129
Identity = 261/275 (94.91%), Postives = 267/275 (97.09%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQ+K+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQNKIKAAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
            T PKA VS  VE SQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  LTHPKASVSTQVEASQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKER+ERERE+SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKERDEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           S DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKK KSVNFNGLPTRVLLLRNMV
Sbjct: 241 AGVIVNANDTKSEKKAKSVNFNGLPTRVLLLRNMV 275

[Close]

BLAST of Lag0014070 vs. ExPASy TrEMBL
Match: A0A6J1ELY8 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433765 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.7e-128
Identity = 262/275 (95.27%), Postives = 265/275 (96.36%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSKVK AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STLPKALVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120
           ST PK    A VEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPK----ASVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGA+PRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAVPRSPSPPS 180

Query: 181 SADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMV 276
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMV
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMV 271

[Close]

BLAST of Lag0014070 vs. TAIR 10
Match: AT1G30480.1 (D111/G-patch domain-containing protein )

HSP 1 Score: 324.3 bits (830), Expect = 9.7e-89
Identity = 201/299 (67.22%), Postives = 229/299 (76.59%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60
           MLGGLYGDLPPP+  E+   ++S+VWSSSTKMAPPTLRKP +   PQT+LR  +K     
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNK----- 60

Query: 61  STLPKALVSAPVEP------SQPILAEA-----ITQPALVAVTSTVIEEYDPARPNDYEE 120
              PK +VSAP +P      SQ +L  A       QPALV VTS+VIEEYDPARPNDYEE
Sbjct: 61  ---PKPIVSAPYKPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEE 120

Query: 121 YRVEKKRKAMEAEMRKELERRRQEEEEREKKEREERERE-----YSDSRLNISGEEAWRR 180
           Y+ EKKRKA EAEM++E+++RRQE+EER+K+EREERE+E        SRLNISGEEAW+R
Sbjct: 121 YKREKKRKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKR 180

Query: 181 RAAK----SGAIPRSPSPPSSADGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQG 240
           RAA     SG   RS SPP + DGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQG
Sbjct: 181 RAAMSGGGSGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQG 240

Query: 241 LGKQEQGITTPLMAKKTDLRAGVIVNANDTKS----EKKVKSVNFNGLPTRVLLLRNMV 276
           LGK EQGITTPLMAKKTD RAGVIVNA++ KS    +K VKSVN NG PTRVLLLRNMV
Sbjct: 241 LGKSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMV 291

The following BLAST results are available for this feature:

BLAST of Lag0014070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882071.1	7.8e-133	97.09	DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida]	[more]
XP_023003194.1	5.1e-132	97.09	DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxim...	[more]
KAG6594427.1	1.3e-130	96.00	DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosp...	[more]
XP_022146691.1	1.6e-130	96.00	DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia]	[more]
XP_004134609.1	2.1e-130	95.64	DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus] >KG...	[more]

BLAST of Lag0014070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42698	1.4e-87	67.22	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thalia...	[more]
Q96I25	5.9e-06	29.91	Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1	[more]
Q8JZX4	5.0e-05	29.85	Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1	[more]

BLAST of Lag0014070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSL4	2.5e-132	97.09	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita max...	[more]
A0A6J1D044	7.9e-131	96.00	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charanti...	[more]
A0A0A0KP45	1.0e-130	95.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1	[more]
A0A1S3AYL8	2.0e-129	94.91	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=36...	[more]
A0A6J1ELY8	1.7e-128	95.27	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita mos...	[more]

BLAST of Lag0014070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30480.1	9.7e-89	67.22	D111/G-patch domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..40
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 200..246 e-value: 1.4E-15 score: 67.8
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 205..244 e-value: 6.3E-17 score: 61.2
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 202..248 score: 15.451051
IPR040052	Splicing factor 45	PIRSF	PIRSF031066	SPF45	coord: 3..277 e-value: 3.5E-63 score: 212.3
IPR040052	Splicing factor 45	PANTHER	PTHR13288	SPLICING FACTOR 45 SPF45	coord: 1..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014070.1	Lag0014070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0043484	regulation of RNA splicing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding