Lag0014008 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014008
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein of unknown function, DUF538
Locationchr1: 54390049 .. 54390492 (-)
RNA-Seq ExpressionLag0014008
SyntenyLag0014008
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGATGCAACTGGCGACAAACAGAGTAGACGCCGAGATCTACAATGGCGACGCTCTCTGCAAGCAAAAGTCTCGAGAGCTTCTCGATCAATTCTTTCTTCCTCGAGGCCTTCTCCCCTTAAACGACATCCTCGAGATCGGCTACAATCGGACCTCCGGTTTCATCTGGCTCAAGCAGCAGAAGAAAAAGGAGCACCGCTTCGCCGCCATCGGACGCACCGTCTTGTACGACACCGAGGTCACCGCCTTCATCGAGGAGCGCCGCCTCCGCCGCCTCACCGGAGTTAAGAGCAAGGAGTTCTTTCTTGCGATCACTGTTTCCGATATTTATATTGATGAACGGAACACGAGTAGGATCACGTTCGGTACTCTGACTGGAATTGCCAAGTCCTTTCCGGTCTCTGCGTTTCTGATTGAAGAAGAAACTGATCGGAAGAGGTGA

mRNA sequence

ATGACGATGCAACTGGCGACAAACAGAGTAGACGCCGAGATCTACAATGGCGACGCTCTCTGCAAGCAAAAGTCTCGAGAGCTTCTCGATCAATTCTTTCTTCCTCGAGGCCTTCTCCCCTTAAACGACATCCTCGAGATCGGCTACAATCGGACCTCCGGTTTCATCTGGCTCAAGCAGCAGAAGAAAAAGGAGCACCGCTTCGCCGCCATCGGACGCACCGTCTTGTACGACACCGAGGTCACCGCCTTCATCGAGGAGCGCCGCCTCCGCCGCCTCACCGGAGTTAAGAGCAAGGAGTTCTTTCTTGCGATCACTGTTTCCGATATTTATATTGATGAACGGAACACGAGTAGGATCACGTTCGGTACTCTGACTGGAATTGCCAAGTCCTTTCCGGTCTCTGCGTTTCTGATTGAAGAAGAAACTGATCGGAAGAGGTGA

Coding sequence (CDS)

ATGACGATGCAACTGGCGACAAACAGAGTAGACGCCGAGATCTACAATGGCGACGCTCTCTGCAAGCAAAAGTCTCGAGAGCTTCTCGATCAATTCTTTCTTCCTCGAGGCCTTCTCCCCTTAAACGACATCCTCGAGATCGGCTACAATCGGACCTCCGGTTTCATCTGGCTCAAGCAGCAGAAGAAAAAGGAGCACCGCTTCGCCGCCATCGGACGCACCGTCTTGTACGACACCGAGGTCACCGCCTTCATCGAGGAGCGCCGCCTCCGCCGCCTCACCGGAGTTAAGAGCAAGGAGTTCTTTCTTGCGATCACTGTTTCCGATATTTATATTGATGAACGGAACACGAGTAGGATCACGTTCGGTACTCTGACTGGAATTGCCAAGTCCTTTCCGGTCTCTGCGTTTCTGATTGAAGAAGAAACTGATCGGAAGAGGTGA

Protein sequence

MTMQLATNRVDAEIYNGDALCKQKSRELLDQFFLPRGLLPLNDILEIGYNRTSGFIWLKQQKKKEHRFAAIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFFLAITVSDIYIDERNTSRITFGTLTGIAKSFPVSAFLIEEETDRKR
Homology
BLAST of Lag0014008 vs. NCBI nr
Match: XP_038882768.1 (uncharacterized protein LOC120073921 [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 6.3e-70
Identity = 135/147 (91.84%), Postives = 142/147 (96.60%), Query Frame = 0

Query: 1   MTMQLATNRVDAEIYNGDALCKQKSRELLDQFFLPRGLLPLNDILEIGYNRTSGFIWLKQ 60
           MT QLAT+R DAEIYNGDALCKQKS+ELLDQFFLPRGLLPLN+ILE+GYN+TSGFIW KQ
Sbjct: 1   MTTQLATHRADAEIYNGDALCKQKSQELLDQFFLPRGLLPLNEILEVGYNKTSGFIWFKQ 60

Query: 61  QKKKEHRFAAIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFFLAITVSDIYIDERNTSRI 120
           QKKKEHRFAAIGRTVLYD EVTAFIEERRLRRLTGVKSKEFFL ITVSDIYIDE+NTSRI
Sbjct: 61  QKKKEHRFAAIGRTVLYDIEVTAFIEERRLRRLTGVKSKEFFLWITVSDIYIDEQNTSRI 120

Query: 121 TFGTLTGIAKSFPVSAFLIEEETDRKR 148
           TFGTLTGIAKSFPVSAFLIEEETDRK+
Sbjct: 121 TFGTLTGIAKSFPVSAFLIEEETDRKK 147

BLAST of Lag0014008 vs. NCBI nr
Match: XP_022926669.1 (uncharacterized protein LOC111433730 [Cucurbita moschata] >KAG6594468.1 hypothetical protein SDJN03_11021, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026466.1 hypothetical protein SDJN02_10466, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267.3 bits (682), Expect = 7.8e-68
Identity = 130/147 (88.44%), Postives = 140/147 (95.24%), Query Frame = 0

Query: 1   MTMQLATNRVDAEIYNGDALCKQKSRELLDQFFLPRGLLPLNDILEIGYNRTSGFIWLKQ 60
           M+ QL T+R DAEIY+GDA+CKQKS+ELLDQFFLPRGLLPLNDILE+GYNRTSGFIWLKQ
Sbjct: 1   MSTQLETHRADAEIYHGDAICKQKSQELLDQFFLPRGLLPLNDILEVGYNRTSGFIWLKQ 60

Query: 61  QKKKEHRFAAIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFFLAITVSDIYIDERNTSRI 120
           QKKKEHRF AIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFF +ITVSDIYID  NTSRI
Sbjct: 61  QKKKEHRFVAIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFFFSITVSDIYIDVHNTSRI 120

Query: 121 TFGTLTGIAKSFPVSAFLIEEETDRKR 148
           TFGTLTGI+KSFPVSAFLIEEETD+K+
Sbjct: 121 TFGTLTGISKSFPVSAFLIEEETDQKK 147

BLAST of Lag0014008 vs. NCBI nr
Match: XP_008439638.1 (PREDICTED: uncharacterized protein LOC103484371 [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 131/147 (89.12%), Postives = 138/147 (93.88%), Query Frame = 0

Query: 1   MTMQLATNRVDAEIYNGDALCKQKSRELLDQFFLPRGLLPLNDILEIGYNRTSGFIWLKQ 60
           MT QLAT   DAEIYNGDA+CKQKS+ELLDQFFLPRGLLPL+DILE+GYNRTSGFIWLKQ
Sbjct: 1   MTTQLATRTADAEIYNGDAICKQKSQELLDQFFLPRGLLPLDDILEVGYNRTSGFIWLKQ 60

Query: 61  QKKKEHRFAAIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFFLAITVSDIYIDERNTSRI 120
           QKKKEHRF AIGRTVLYDTEVTAFIEERR RRLTGVKSKEFF  ITVSDIYIDE+NTS+I
Sbjct: 61  QKKKEHRFPAIGRTVLYDTEVTAFIEERRFRRLTGVKSKEFFFWITVSDIYIDEQNTSKI 120

Query: 121 TFGTLTGIAKSFPVSAFLIEEETDRKR 148
           TFGT TGIAKSFPVSAFLIEEETDRK+
Sbjct: 121 TFGTSTGIAKSFPVSAFLIEEETDRKK 147

BLAST of Lag0014008 vs. NCBI nr
Match: XP_023517978.1 (uncharacterized protein LOC111781549 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 130/147 (88.44%), Postives = 139/147 (94.56%), Query Frame = 0

Query: 1   MTMQLATNRVDAEIYNGDALCKQKSRELLDQFFLPRGLLPLNDILEIGYNRTSGFIWLKQ 60
           M+ QL T+R DAEIY+GDA+CKQKS+ELLDQFFLPRGLLPLNDILE+GYNRTSGFIWLKQ
Sbjct: 1   MSTQLETHRADAEIYHGDAICKQKSQELLDQFFLPRGLLPLNDILEVGYNRTSGFIWLKQ 60

Query: 61  QKKKEHRFAAIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFFLAITVSDIYIDERNTSRI 120
           QKKKEHRF AIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFF  ITVSDIYID  NTSRI
Sbjct: 61  QKKKEHRFVAIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFFFLITVSDIYIDVHNTSRI 120

Query: 121 TFGTLTGIAKSFPVSAFLIEEETDRKR 148
           TFGTLTGI+KSFPVSAFLIEEETD+K+
Sbjct: 121 TFGTLTGISKSFPVSAFLIEEETDQKK 147

BLAST of Lag0014008 vs. NCBI nr
Match: KAA0052544.1 (DUF538 domain-containing protein [Cucumis melo var. makuwa] >TYK13281.1 DUF538 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 1.7e-67
Identity = 130/147 (88.44%), Postives = 138/147 (93.88%), Query Frame = 0

Query: 1   MTMQLATNRVDAEIYNGDALCKQKSRELLDQFFLPRGLLPLNDILEIGYNRTSGFIWLKQ 60
           MT Q+AT   DAEIYNGDA+CKQKS+ELLDQFFLPRGLLPL+DILE+GYNRTSGFIWLKQ
Sbjct: 1   MTTQIATRTADAEIYNGDAICKQKSQELLDQFFLPRGLLPLDDILEVGYNRTSGFIWLKQ 60

Query: 61  QKKKEHRFAAIGRTVLYDTEVTAFIEERRLRRLTGVKSKEFFLAITVSDIYIDERNTSRI 120
           QKKKEHRF AIGRTVLYDTEVTAFIEERR RRLTGVKSKEFF  ITVSDIYIDE+NTS+I
Sbjct: 61  QKKKEHRFPAIGRTVLYDTEVTAFIEERRFRRLTGVKSKEFFFWITVSDIYIDEQNTSKI 120

Query: 121 TFGTLTGIAKSFPVSAFLIEEETDRKR 148
           TFGT TGIAKSFPVSAFLIEEETDRK+
Sbjct: 121 TFGTSTGIAKSFPVSAFLIEEETDRKK 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882768.16.3e-7091.84uncharacterized protein LOC120073921 [Benincasa hispida][more]
XP_022926669.17.8e-6888.44uncharacterized protein LOC111433730 [Cucurbita moschata] >KAG6594468.1 hypothet... [more]
XP_008439638.11.0e-6789.12PREDICTED: uncharacterized protein LOC103484371 [Cucumis melo][more]
XP_023517978.11.3e-6788.44uncharacterized protein LOC111781549 [Cucurbita pepo subsp. pepo][more]
KAA0052544.11.7e-6788.44DUF538 domain-containing protein [Cucumis melo var. makuwa] >TYK13281.1 DUF538 d... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007493Protein of unknown function DUF538PFAMPF04398DUF538coord: 27..137
e-value: 2.2E-28
score: 98.9
IPR007493Protein of unknown function DUF538PANTHERPTHR31676T31J12.3 PROTEIN-RELATEDcoord: 7..140
IPR036758At5g01610-like superfamilyGENE3D2.30.240.10coord: 8..145
e-value: 2.5E-31
score: 110.2
IPR036758At5g01610-like superfamilySUPERFAMILY141562At5g01610-likecoord: 7..141
NoneNo IPR availablePANTHERPTHR31676:SF7OS01G0210600 PROTEINcoord: 7..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014008.1Lag0014008.1mRNA