Lag0013569 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013569
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Endochitinase
Location	chr1: 51270469 .. 51271248 (+)
RNA-Seq Expression	Lag0013569
Synteny	Lag0013569

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCCATCAAATGCTATATAGCAGCTAAAAGATTTCCTGGTTACGGTGTCATCACCAACATCATCAACGGTGGACTTGAATGCGGGCATGGTCCTAATGCTAGAGTTGAAGATAGAATTGGATTTTATAAGAGGTACTGCGACATGTTGGGTATCGAGTACGACGACAACCTAGACTGTTACACACAACAGCCTTTTGGTACAACAGCCTTTTGGTTGGGGTGTAAAATTATCTTATGAAATGTAATGAAAGCATTTTATTTATCTATCTCCAACATACTTGAGATAGAGTTAAAAAGTGTAATTGTGGTATTTTGCTTTCTTTATAGCTTAGAGAAAGCAAAACTTTGATGTTAAATATAAAATGAATGTTTTGTCCCATGCTTTAATCCAATATTATTGTCTATTAAAGGTAAAAGGTGATACAACATATAATAGAGATACAAAGTAGTGGGACACTTTCATTTAAATTCCAAATTTAACCAAATGGTATATATATAAAGTCTGCAGAAGAATATATATTTCAGTTAATTGAATATGATTCAATAAATACAGTTATGGAAGCCAAAGCTAAGAACTAAGGTAAGGAGTTGGTTGGGTACTACTGGTACGCCACTTATCGGACTCTATTGTAGCATTTATGAGTACTGCAGCACCACCAGAGCTTACTGTGTTGACGTTGAGAAGGTTATTGTCAAAGTCAGTACTGGTCTACAATTCTCCCCAATGCCAAGTTGCATCGCAATCAACCACCATGCCCTACCACCTATCAATTAA

mRNA sequence

ATGGGAGCCATCAAATGCTATATAGCAGCTAAAAGATTTCCTGGTTACGGTGTCATCACCAACATCATCAACGGTGGACTTGAATGCGGGCATGGTCCTAATGCTAGAGTTGAAGATAGAATTGGATTTTATAAGAGCATTTATGAGTACTGCAGCACCACCAGAGCTTACTGTGTTGACGTTGAGAAGGTTATTGTCAAAGTCAGTACTGGTCTACAATTCTCCCCAATGCCAAGTTGCATCGCAATCAACCACCATGCCCTACCACCTATCAATTAA

Coding sequence (CDS)

ATGGGAGCCATCAAATGCTATATAGCAGCTAAAAGATTTCCTGGTTACGGTGTCATCACCAACATCATCAACGGTGGACTTGAATGCGGGCATGGTCCTAATGCTAGAGTTGAAGATAGAATTGGATTTTATAAGAGCATTTATGAGTACTGCAGCACCACCAGAGCTTACTGTGTTGACGTTGAGAAGGTTATTGTCAAAGTCAGTACTGGTCTACAATTCTCCCCAATGCCAAGTTGCATCGCAATCAACCACCATGCCCTACCACCTATCAATTAA

Protein sequence

MGAIKCYIAAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYCSTTRAYCVDVEKVIVKVSTGLQFSPMPSCIAINHHALPPIN

Homology

[Close]

BLAST of Lag0013569 vs. NCBI nr
Match: XP_031743365.1 (chitinase 1 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 9   AAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYC 52
           AA R PGYGVITNIINGGLECGHGP++RVEDRIGFYK    YC
Sbjct: 302 AAGRVPGYGVITNIINGGLECGHGPDSRVEDRIGFYK---RYC 341

[Close]

BLAST of Lag0013569 vs. NCBI nr
Match: XP_015951307.1 (endochitinase-like [Arachis duranensis])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 9   AAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYCS 53
           AA R PGYGVITNIINGGLECGHGP++RVEDRIGFY     YCS
Sbjct: 257 AAGRVPGYGVITNIINGGLECGHGPDSRVEDRIGFYS---RYCS 297

[Close]

BLAST of Lag0013569 vs. NCBI nr
Match: CAD1821283.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 8   IAAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYC 52
           ++A R PGYGVITNIINGGLECGHGPN+RV DRIGFYK    YC
Sbjct: 170 VSAGRLPGYGVITNIINGGLECGHGPNSRVADRIGFYK---RYC 210

[Close]

BLAST of Lag0013569 vs. NCBI nr
Match: XP_025695605.1 (basic 30 kDa endochitinase isoform X2 [Arachis hypogaea])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 9   AAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYCS 53
           AA R PGYGVITNIINGGLECGHGP++RVEDRIGFY     YCS
Sbjct: 249 AAGRVPGYGVITNIINGGLECGHGPDSRVEDRIGFYS---RYCS 289

[Close]

BLAST of Lag0013569 vs. NCBI nr
Match: XP_016187773.1 (endochitinase-like [Arachis ipaensis] >XP_025641323.1 endochitinase [Arachis hypogaea] >QHN98350.1 Endochitinase [Arachis hypogaea] >RYR23652.1 hypothetical protein Ahy_B03g068846 [Arachis hypogaea])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 9   AAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYCS 53
           AA R PGYGVITNIINGGLECGHGP++RVEDRIGFY     YCS
Sbjct: 255 AAGRVPGYGVITNIINGGLECGHGPDSRVEDRIGFYS---RYCS 295

[Close]

BLAST of Lag0013569 vs. ExPASy Swiss-Prot
Match: P29059 (Endochitinase 3 OS=Nicotiana tabacum OX=4097 GN=CHN14 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.5e-13
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 9   AAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYCS 53
           AA R PGYGVITNIINGGLECGHG +ARV+DRIGFY+    YCS
Sbjct: 267 AANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYR---RYCS 307

[Close]

BLAST of Lag0013569 vs. ExPASy Swiss-Prot
Match: Q41596 (Endochitinase 1 OS=Theobroma cacao OX=3641 GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-12
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 9   AAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYCST 54
           AA R PG+G+ITNIINGGLECG G NA+VEDRIGFYK    YC T
Sbjct: 254 AAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYK---RYCDT 295

[Close]

BLAST of Lag0013569 vs. ExPASy Swiss-Prot
Match: Q39799 (Endochitinase 1 OS=Gossypium hirsutum OX=3635 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 9   AAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYC 52
           AA R PGYGVITNIINGGLECG G NA+VEDRIGFYK    YC
Sbjct: 257 AAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYK---RYC 296

[Close]

BLAST of Lag0013569 vs. ExPASy Swiss-Prot
Match: Q949H3 (Inactive chitinase-like protein 1 OS=Hevea brasiliensis OX=3981 GN=CHI-L1 PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 8   IAAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYC 52
           I+A R PGYGVITNIINGGLECG G +ARVEDRIGFYK    YC
Sbjct: 252 ISAGRAPGYGVITNIINGGLECGRGWDARVEDRIGFYK---RYC 292

[Close]

BLAST of Lag0013569 vs. ExPASy Swiss-Prot
Match: P52403 (Endochitinase 1 (Fragment) OS=Solanum tuberosum OX=4113 GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 9   AAKRFPGYGVITNIINGGLECGHGPNARVEDRIGFYKSIYEYC 52
           AA R PG+GVITNIINGGLECGHG ++RV+DRIGFY+    YC
Sbjct: 251 AANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYR---RYC 290

The following BLAST results are available for this feature:

BLAST of Lag0013569 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743365.1	1.2e-10	81.40	chitinase 1 [Cucumis sativus]	[more]
XP_015951307.1	1.2e-10	79.55	endochitinase-like [Arachis duranensis]	[more]
CAD1821283.1	1.2e-10	77.27	unnamed protein product [Ananas comosus var. bracteatus]	[more]
XP_025695605.1	1.2e-10	79.55	basic 30 kDa endochitinase isoform X2 [Arachis hypogaea]	[more]
XP_016187773.1	1.2e-10	79.55	endochitinase-like [Arachis ipaensis] >XP_025641323.1 endochitinase [Arachis hyp...	[more]

BLAST of Lag0013569 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29059	3.5e-13	77.27	Endochitinase 3 OS=Nicotiana tabacum OX=4097 GN=CHN14 PE=3 SV=1	[more]
Q41596	8.7e-12	73.33	Endochitinase 1 OS=Theobroma cacao OX=3641 GN=CHIA1 PE=2 SV=1	[more]
Q39799	1.1e-11	79.07	Endochitinase 1 OS=Gossypium hirsutum OX=3635 PE=3 SV=1	[more]
Q949H3	1.1e-11	77.27	Inactive chitinase-like protein 1 OS=Hevea brasiliensis OX=3981 GN=CHI-L1 PE=1 S...	[more]
P52403	1.1e-11	72.09	Endochitinase 1 (Fragment) OS=Solanum tuberosum OX=4113 GN=CHTB1 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000726	Glycoside hydrolase, family 19, catalytic	PFAM	PF00182	Glyco_hydro_19	coord: 9..52 e-value: 3.1E-17 score: 63.1
None	No IPR available	GENE3D	1.10.530.10		coord: 8..53 e-value: 9.7E-14 score: 53.4
None	No IPR available	PANTHER	PTHR22595:SF171	CHITINASE (CLASS IB) / HEVEIN	coord: 8..53
None	No IPR available	PANTHER	PTHR22595	CHITINASE-RELATED	coord: 8..53
IPR023346	Lysozyme-like domain superfamily	SUPERFAMILY	53955	Lysozyme-like	coord: 8..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0013569.1	Lag0013569.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016998	cell wall macromolecule catabolic process
biological_process	GO:0006032	chitin catabolic process
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0000272	polysaccharide catabolic process
cellular_component	GO:0005773	vacuole
molecular_function	GO:0004568	chitinase activity
molecular_function	GO:0008061	chitin binding