Lag0013250 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0013250
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 48739358 .. 48739663 (+)
RNA-Seq ExpressionLag0013250
SyntenyLag0013250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGGGATCTCGCCCGCCGTCGACTGCCGTACCTGTCCGGCTGCGTTGCAGCTTCTCCAGCGTGCTTTCCGATCCACGAAGGCGTCGAATACTCACGCATCCACGGCGGGGGCGGCGGCGGTGCCAAAAGAAGCGGCTGGAGGTGGCGCTATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGCGTACATGGGTCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCGCAGAATTTCGATGAGGGCTGCCATTCTGAGAGCAATCGAGAAAATGAGATTCGGATTTCGAGATGA

mRNA sequence

ATGGAGAGGGATCTCGCCCGCCGTCGACTGCCGTACCTGTCCGGCTGCGTTGCAGCTTCTCCAGCGTGCTTTCCGATCCACGAAGGCGTCGAATACTCACGCATCCACGGCGGGGGCGGCGGCGGTGCCAAAAGAAGCGGCTGGAGGTGGCGCTATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGCGTACATGGGTCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCGCAGAATTTCGATGAGGGCTGCCATTCTGAGAGCAATCGAGAAAATGAGATTCGGATTTCGAGATGA

Coding sequence (CDS)

ATGGAGAGGGATCTCGCCCGCCGTCGACTGCCGTACCTGTCCGGCTGCGTTGCAGCTTCTCCAGCGTGCTTTCCGATCCACGAAGGCGTCGAATACTCACGCATCCACGGCGGGGGCGGCGGCGGTGCCAAAAGAAGCGGCTGGAGGTGGCGCTATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGCGTACATGGGTCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCGCAGAATTTCGATGAGGGCTGCCATTCTGAGAGCAATCGAGAAAATGAGATTCGGATTTCGAGATGA

Protein sequence

MERDLARRRLPYLSGCVAASPACFPIHEGVEYSRIHGGGGGGAKRSGWRWRYLLRRWVKDSMSVHGSKSLSFQYDAVSYSQNFDEGCHSESNRENEIRISR
Homology
BLAST of Lag0013250 vs. NCBI nr
Match: KAG6594915.1 (hypothetical protein SDJN03_11468, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.6 bits (449), Expect = 5.5e-41
Identity = 85/104 (81.73%), Postives = 92/104 (88.46%), Query Frame = 0

Query: 1   MERDLARRRLPYLSGCVAASPACFPIHEGVEYSRIH---GGGGGGAKRSGWRWRYLLRRW 60
           ME DLARRRLPYLS CVAAS  CFPIHEGVEYSRI+   GGGGGG KR GWRWRYLLRRW
Sbjct: 1   METDLARRRLPYLSACVAASSPCFPIHEGVEYSRINGGGGGGGGGGKRIGWRWRYLLRRW 60

Query: 61  VKDSMSVHGSKSLSFQYDAVSYSQNFDEGCHSESNRENEIRISR 102
           +KD M+++G+KSLSFQYDAVSYSQNFD+GCH E NRENEIRISR
Sbjct: 61  MKDRMNMYGTKSLSFQYDAVSYSQNFDDGCHYERNRENEIRISR 104

BLAST of Lag0013250 vs. NCBI nr
Match: KGN48682.1 (hypothetical protein Csa_003439 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 3.4e-38
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 0

Query: 1   MERDLARRRLPYLSGCVAASPACFPIHEGVEYSRIHGGGGGGAKRSGWRWRYLLRRWVKD 60
           M+RDL  RRLPYLSGCV +SPACFPIHEGVEY+RIH  GG GAKRSGWRWRYLLR+WVKD
Sbjct: 1   MDRDLGCRRLPYLSGCVPSSPACFPIHEGVEYTRIH--GGAGAKRSGWRWRYLLRKWVKD 60

Query: 61  SMSVHGSKSLSFQYDAVSYSQNFDEG--CHSESNRENEIRISR 102
            M+++GSKSLSFQYDAVSYSQNFDEG  C+   +RENEI ISR
Sbjct: 61  GMNIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

BLAST of Lag0013250 vs. NCBI nr
Match: KAA0057639.1 (hypothetical protein E6C27_scaffold25649G00010 [Cucumis melo var. makuwa] >TYJ97130.1 hypothetical protein E5676_scaffold3040G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35
Identity = 82/105 (78.10%), Postives = 88/105 (83.81%), Query Frame = 0

Query: 1   MERDLARRRLPYLSGCVAASP-ACFPIHEG-VEYSRIHGGGGGGAKRSGWRWRYLLRRWV 60
           MERDL   RLPYLSGCV ASP ACFP+HEG V Y+RIHGG GG  KRS WRWRYLLR+WV
Sbjct: 1   MERDLGCSRLPYLSGCVPASPAACFPVHEGSVGYTRIHGGAGG--KRSAWRWRYLLRKWV 60

Query: 61  KDSMSVHGSKSLSFQYDAVSYSQNFDEG--CHSESNRENEIRISR 102
           KDSMS++GSKSLSFQYDAVSYSQNFDEG  C+   NRENEI ISR
Sbjct: 61  KDSMSIYGSKSLSFQYDAVSYSQNFDEGSRCYESYNRENEIGISR 103

BLAST of Lag0013250 vs. NCBI nr
Match: XP_022741710.1 (uncharacterized protein LOC111293198 [Durio zibethinus])

HSP 1 Score: 114.0 bits (284), Expect = 7.5e-22
Identity = 57/93 (61.29%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 1  MERDLARRRLPYLSGCVAASPACFPIHEGVEYSRIHGGGGGGAKRSGWRWRYLLRRWVKD 60
          MERDL RRR  Y SGC   SP+CFP+HE +EYSRIH       +R   RWR LLRR ++D
Sbjct: 4  MERDLGRRRSSYFSGCYMMSPSCFPVHEEMEYSRIHYCSSSDKRRR--RWRNLLRRLLRD 63

Query: 61 SM-SVHGSKSLSFQYDAVSYSQNFDEGCHSESN 93
             S++GSK LSF YDAVSYSQNFDEGCH E +
Sbjct: 64 GKNSIYGSKPLSFHYDAVSYSQNFDEGCHHEES 94

BLAST of Lag0013250 vs. NCBI nr
Match: MBA0653770.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-19
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 1  MERDLARRR--LPYLSGCVAASPACFPIHEGVEYSRIHGGGGGGAKRSGWRWRYLLRRWV 60
          MERDL  RR    Y  GC   SP+CFP+HE ++YSRIH    GG  R+  RWR LLRR V
Sbjct: 4  MERDLINRRRGSSYFCGCYMMSPSCFPVHEELDYSRIHHCSSGGDNRTRRRWRNLLRRLV 63

Query: 61 KD-SMSVHGSK-SLSFQYDAVSYSQNFDEGCHSESN 93
          KD   S++GSK  LSF YDAVSYSQNFDEGCH + +
Sbjct: 64 KDGKTSLYGSKPPLSFHYDAVSYSQNFDEGCHRDES 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6594915.15.5e-4181.73hypothetical protein SDJN03_11468, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN48682.13.4e-3878.64hypothetical protein Csa_003439 [Cucumis sativus][more]
KAA0057639.13.5e-3578.10hypothetical protein E6C27_scaffold25649G00010 [Cucumis melo var. makuwa] >TYJ97... [more]
XP_022741710.17.5e-2261.29uncharacterized protein LOC111293198 [Durio zibethinus][more]
MBA0653770.11.2e-1959.38hypothetical protein [Gossypium klotzschianum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168:SF6OS05G0516100 PROTEINcoord: 7..90
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 7..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0013250.1Lag0013250.1mRNA