Lag0013211 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0013211
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Epidermal patterning factor-like protein
Location	chr1: 48413008 .. 48413618 (+)
RNA-Seq Expression	Lag0013211
Synteny	Lag0013211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGTGAGTGTAACAACAATGGCGTCATTGGCCGCAGTAGAATCTTGTGTGCGACTGTTCCTTTTCTCTTTCTTCTGATTTTGGCATCGACCCAGATGAGATTCATGGCTGAAGGTAACTGGGTATCTTTTGAAACTTCAAAATACAGTCCAGAACCAGCCTAATATGATCTTCAACTTCAATTTCAGTTTAACTGAATTCTTGCGAATCGTTTTTCTTTGCAGGCAGATCGGTTTCAAAGAGTGGCAAGGTCAGTCCACAAGCCAGCCCTTCCCTCCCTAGTTTCTGATTCATATACTCTTTAACTGTTTCTGAAAGCTTGATTGTGAAGAATAATTTTGGTTTTTGTTTTGGTGAATTGGGATAGACAGTGAGTGAAGATAAAGTGCTATTAAGAGGACAGATTGGGTCAAGGCCTCCAAAATGCGAGAGAAGATGCAGCTGGTGTGGACACTGTGAGGCCATTCAAGTTCCAGCAAACCCACAAAAATCAGCAACGAAAAACTCTTCAACGATGAAGAACATAGCATATGCTAGAGATGAAGCCTCAAATTACAAGCCCATGAGCTGGAAATGCAAATGTGGGAGCTTAATCTTCAACCCTTAA

mRNA sequence

ATGGGGTGTGAGTGTAACAACAATGGCGTCATTGGCCGCAGTAGAATCTTGTGTGCGACTGTTCCTTTTCTCTTTCTTCTGATTTTGGCATCGACCCAGATGAGATTCATGGCTGAAGGCAGATCGGTTTCAAAGAGTGGCAAGACAGTGAGTGAAGATAAAGTGCTATTAAGAGGACAGATTGGGTCAAGGCCTCCAAAATGCGAGAGAAGATGCAGCTGGTGTGGACACTGTGAGGCCATTCAAGTTCCAGCAAACCCACAAAAATCAGCAACGAAAAACTCTTCAACGATGAAGAACATAGCATATGCTAGAGATGAAGCCTCAAATTACAAGCCCATGAGCTGGAAATGCAAATGTGGGAGCTTAATCTTCAACCCTTAA

Coding sequence (CDS)

ATGGGGTGTGAGTGTAACAACAATGGCGTCATTGGCCGCAGTAGAATCTTGTGTGCGACTGTTCCTTTTCTCTTTCTTCTGATTTTGGCATCGACCCAGATGAGATTCATGGCTGAAGGCAGATCGGTTTCAAAGAGTGGCAAGACAGTGAGTGAAGATAAAGTGCTATTAAGAGGACAGATTGGGTCAAGGCCTCCAAAATGCGAGAGAAGATGCAGCTGGTGTGGACACTGTGAGGCCATTCAAGTTCCAGCAAACCCACAAAAATCAGCAACGAAAAACTCTTCAACGATGAAGAACATAGCATATGCTAGAGATGAAGCCTCAAATTACAAGCCCATGAGCTGGAAATGCAAATGTGGGAGCTTAATCTTCAACCCTTAA

Protein sequence

MGCECNNNGVIGRSRILCATVPFLFLLILASTQMRFMAEGRSVSKSGKTVSEDKVLLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMKNIAYARDEASNYKPMSWKCKCGSLIFNP

Homology

[Close]

BLAST of Lag0013211 vs. NCBI nr
Match: XP_023003267.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 117/127 (92.13%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATVPFLFLLILASTQMRFMAEGRSVSKSGKTVSEDKVLLRGQ 60
           MGCECNNNGVIGR RILCATV FLFLLILASTQMRFMAEGRS+SKSGKTVSEDKV+LRGQ
Sbjct: 1   MGCECNNNGVIGRCRILCATVSFLFLLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 60

Query: 61  IGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMKNIAYARDEASNYKPMSWKCKC 120
           IGSRPPKCERRCSWC HCEAIQVPANPQK     SSTMKNIAYARDEASNYKPMSWKCKC
Sbjct: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSTMKNIAYARDEASNYKPMSWKCKC 120

Query: 121 GSLIFNP 128
           GSLIFNP
Sbjct: 121 GSLIFNP 122

[Close]

BLAST of Lag0013211 vs. NCBI nr
Match: XP_023003266.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 1.4e-60
Identity = 117/127 (92.13%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATVPFLFLLILASTQMRFMAEGRSVSKSGKTVSEDKVLLRGQ 60
           MGCECNNNGVIGR RILCATV FLFLLILASTQMRFMAEGRS+SKSGKTVSEDKV+LRGQ
Sbjct: 30  MGCECNNNGVIGRCRILCATVSFLFLLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 89

Query: 61  IGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMKNIAYARDEASNYKPMSWKCKC 120
           IGSRPPKCERRCSWC HCEAIQVPANPQK     SSTMKNIAYARDEASNYKPMSWKCKC
Sbjct: 90  IGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSTMKNIAYARDEASNYKPMSWKCKC 149

Query: 121 GSLIFNP 128
           GSLIFNP
Sbjct: 150 GSLIFNP 151

[Close]

BLAST of Lag0013211 vs. NCBI nr
Match: XP_022963149.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata])

HSP 1 Score: 241.5 bits (615), Expect = 3.9e-60
Identity = 116/127 (91.34%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATVPFLFLLILASTQMRFMAEGRSVSKSGKTVSEDKVLLRGQ 60
           MGCECNNNGVIGRSRILCATV FLF LILASTQMRFMAEGRS+SKSGKTVSEDKV+LRGQ
Sbjct: 55  MGCECNNNGVIGRSRILCATVSFLFFLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 114

Query: 61  IGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMKNIAYARDEASNYKPMSWKCKC 120
           IGSRPPKCERRCSWC HCEAIQVPANPQK     SS MKNIAYARDEASNYKPMSWKCKC
Sbjct: 115 IGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSAMKNIAYARDEASNYKPMSWKCKC 174

Query: 121 GSLIFNP 128
           GSLIFNP
Sbjct: 175 GSLIFNP 176

[Close]

BLAST of Lag0013211 vs. NCBI nr
Match: XP_023518506.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 8.8e-60
Identity = 115/127 (90.55%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATVPFLFLLILASTQMRFMAEGRSVSKSGKTVSEDKVLLRGQ 60
           MGCECNNNGVIGRSRILCAT+ FLF LILASTQMRFMAEGRS+ KSGKTVSEDKV+LRGQ
Sbjct: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60

Query: 61  IGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMKNIAYARDEASNYKPMSWKCKC 120
           IGSRPPKCERRCSWC HCEAIQVPANPQK     SSTMKNIAYARDEASNYKPMSWKCKC
Sbjct: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSTMKNIAYARDEASNYKPMSWKCKC 120

Query: 121 GSLIFNP 128
           GSLIFNP
Sbjct: 121 GSLIFNP 122

[Close]

BLAST of Lag0013211 vs. NCBI nr
Match: XP_023518504.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 8.8e-60
Identity = 115/127 (90.55%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATVPFLFLLILASTQMRFMAEGRSVSKSGKTVSEDKVLLRGQ 60
           MGCECNNNGVIGRSRILCAT+ FLF LILASTQMRFMAEGRS+ KSGKTVSEDKV+LRGQ
Sbjct: 31  MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 90

Query: 61  IGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMKNIAYARDEASNYKPMSWKCKC 120
           IGSRPPKCERRCSWC HCEAIQVPANPQK     SSTMKNIAYARDEASNYKPMSWKCKC
Sbjct: 91  IGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSTMKNIAYARDEASNYKPMSWKCKC 150

Query: 121 GSLIFNP 128
           GSLIFNP
Sbjct: 151 GSLIFNP 152

[Close]

BLAST of Lag0013211 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-23
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 24  LFLLILASTQMRFMAEGR----SVSKSGKTVSEDKVLLRGQIGSRPPKCER-RCSWCGHC 83
           L LLIL ST    MA GR    SV  +     + K+++RG IGSRPP+CER RC  CGHC
Sbjct: 12  LILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCGHC 71

Query: 84  EAIQVPANPQ-------KSATKNSSTMKNIAYAR-DEASNYKPMSWKCKCGSLIFNP 128
           EAIQVP NPQ        +++ +SS   ++ Y R D+++NYKPMSWKCKCG+ I+NP
Sbjct: 72  EAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of Lag0013211 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 35/115 (30.43%), Postives = 52/115 (45.22%), Query Frame = 0


Query: 21  VPFLFLLILASTQMRFMAEGRSVSKSGKTVSEDKVLLRGQIGSRPPKCERRCSWCGHCEA 80
           +P + +L++      F+   +        + EDK     ++GS PP C  RC+ C  C A
Sbjct: 12  LPLILILLITPQVSSFLQPIQPPISPQVALIEDK----ARLGSTPPSCHNRCNNCHPCMA 71

Query: 81  IQVPANPQKSATKNSSTM--------KNIAYARDEASNYKPMSWKCKCGSLIFNP 128
           IQVP  P +S     +           ++    D+ SNYKPM WKC C    +NP
Sbjct: 72  IQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Lag0013211 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 52  EDKVLLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMKNIAYARDEASNY 111
           E+ V  R +IGS+PP CE++C  C  CEAIQ P            T+ +I +     +NY
Sbjct: 48  EEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFP------------TISSIPHLSPHYANY 104

Query: 112 KPMSWKCKC 121
           +P  W+C C
Sbjct: 108 QPEGWRCHC 104

[Close]

BLAST of Lag0013211 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.9e-05
Identity = 35/121 (28.93%), Postives = 48/121 (39.67%), Query Frame = 0


Query: 13  RSRILCATVPFLFLLILASTQMRFMAEGRSVSK------SGKTVSEDKVLLRGQIGSRPP 72
           R R L A +    LL L S      A+GR + +       G  +  +K    G  GS PP
Sbjct: 7   RRRFLLAALVTFALLHLFSASSIVSADGRWIGQRTGSDLPGGFIRSNKRF--GGPGSSPP 66

Query: 73  KCERRCSWCGHCEAIQVPANPQKSATKNSSTMKNIAYARDEASNYKPMSWKCKCGSLIFN 128
            C  +C  C  C+ + VP  P  S                    Y P +W+CKCG+ +F 
Sbjct: 67  TCRSKCGKCQPCKPVHVPIQPGLSM----------------PLEYYPEAWRCKCGNKLFM 109

The following BLAST results are available for this feature:

BLAST of Lag0013211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023003267.1	1.4e-60	92.13	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita maxima]	[more]
XP_023003266.1	1.4e-60	92.13	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita maxima]	[more]
XP_022963149.1	3.9e-60	91.34	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata]	[more]
XP_023518506.1	8.8e-60	90.55	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita pepo subsp. pep...	[more]
XP_023518504.1	8.8e-60	90.55	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita pepo subsp. pep...	[more]

BLAST of Lag0013211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T068	3.1e-23	51.28	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LFT5	1.9e-09	30.43	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
C4B8C4	4.0e-07	37.68	EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q2V3I3	4.9e-05	28.93	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 60..127 e-value: 5.8E-17 score: 61.4
None	No IPR available	PANTHER	PTHR33109:SF71	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2	coord: 6..127
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 6..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0013211.1	Lag0013211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane