Lag0012931 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012931
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Locationchr1: 45872942 .. 45873481 (+)
RNA-Seq ExpressionLag0012931
SyntenyLag0012931
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACGTCAACCCCGCTAGACTTTCTGTTGCATCCATCGGAACCACAAACTTCAACAATCCTCCTCTAAATCAGCTGCTAAAACAGATTACATCAATCAAGCTAGACAGAGACAACTTTCTGCTCTGGAAAAACCTAACACTACCAATCCTTCGAAGCAACAAATTGGAAGGACATTTATCTGGTGAAAAACCATGCCCTCCAAAGTATGTTCGAGCAACAACCGAGGGTCAGAATGTTGGCTTAACCCCAGGGGAAGGAGCATCTAGCTCAGAGGCAGTTGTGAGTGGAGCGTCTACTTCAACTGCAACGGCGACCATAAATCCCCAATATGAATCTTGGATTGCGATCGATCAGCTACTGCTTGGGTGGCTGTATAACTCGATGACACCTGAAGTTGCAACGCAAGTGATGGGCTTCGAGAACTCTCAAGAGTTCTGGGCAGCTGTGCAAGATCTTTTTGGCATTCAGTCGCAGGCTAAGGAAGACTATCTTTGCCTAGTCTTTCGACAATCTCGAAAAGAGGTATTGCATTGA

mRNA sequence

ATGGCCAACGTCAACCCCGCTAGACTTTCTGTTGCATCCATCGGAACCACAAACTTCAACAATCCTCCTCTAAATCAGCTGCTAAAACAGATTACATCAATCAAGCTAGACAGAGACAACTTTCTGCTCTGGAAAAACCTAACACTACCAATCCTTCGAAGCAACAAATTGGAAGGACATTTATCTGGTGAAAAACCATGCCCTCCAAAGTATGTTCGAGCAACAACCGAGGGTCAGAATGTTGGCTTAACCCCAGGGGAAGGAGCATCTAGCTCAGAGGCAGTTGTGAGTGGAGCGTCTACTTCAACTGCAACGGCGACCATAAATCCCCAATATGAATCTTGGATTGCGATCGATCAGCTACTGCTTGGGTGGCTGTATAACTCGATGACACCTGAAGTTGCAACGCAAGTGATGGGCTTCGAGAACTCTCAAGAGTTCTGGGCAGCTGTGCAAGATCTTTTTGGCATTCAGTCGCAGGCTAAGGAAGACTATCTTTGCCTAGTCTTTCGACAATCTCGAAAAGAGGTATTGCATTGA

Coding sequence (CDS)

ATGGCCAACGTCAACCCCGCTAGACTTTCTGTTGCATCCATCGGAACCACAAACTTCAACAATCCTCCTCTAAATCAGCTGCTAAAACAGATTACATCAATCAAGCTAGACAGAGACAACTTTCTGCTCTGGAAAAACCTAACACTACCAATCCTTCGAAGCAACAAATTGGAAGGACATTTATCTGGTGAAAAACCATGCCCTCCAAAGTATGTTCGAGCAACAACCGAGGGTCAGAATGTTGGCTTAACCCCAGGGGAAGGAGCATCTAGCTCAGAGGCAGTTGTGAGTGGAGCGTCTACTTCAACTGCAACGGCGACCATAAATCCCCAATATGAATCTTGGATTGCGATCGATCAGCTACTGCTTGGGTGGCTGTATAACTCGATGACACCTGAAGTTGCAACGCAAGTGATGGGCTTCGAGAACTCTCAAGAGTTCTGGGCAGCTGTGCAAGATCTTTTTGGCATTCAGTCGCAGGCTAAGGAAGACTATCTTTGCCTAGTCTTTCGACAATCTCGAAAAGAGGTATTGCATTGA

Protein sequence

MANVNPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRKEVLH
Homology
BLAST of Lag0012931 vs. NCBI nr
Match: XP_016900937.1 (PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-43
Identity = 96/174 (55.17%), Postives = 121/174 (69.54%), Query Frame = 0

Query: 5   NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGE 64
           N A +SV +  TT+F NP LNQ+L Q+T+IKLDR N+LLWK L LPIL+S KL  HL GE
Sbjct: 78  NAAPISVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGE 137

Query: 65  KPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAIDQLLLG 124
            PC PK +  TT+  N  +    G  S E     +S+STA  T+NP+YE WI  D LLLG
Sbjct: 138 SPCLPKIIMLTTQ-PNESIVENAGEPSQET----SSSSTAVVTVNPKYERWITTDLLLLG 197

Query: 125 WLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRKEVL 179
           WLYNSMTPEV  Q+MGF N+++ W A QDLFGIQS+AKED+L   F+ ++K V+
Sbjct: 198 WLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGVV 246

BLAST of Lag0012931 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 2.8e-43
Identity = 95/171 (55.56%), Postives = 119/171 (69.59%), Query Frame = 0

Query: 5   NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGE 64
           N A +SV +  TT+F NP LNQ+L Q+T+IKLDR N+LLWK L LPIL+S KL  HL GE
Sbjct: 3   NAAPISVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGE 62

Query: 65  KPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAIDQLLLG 124
            PC PK +  TT+  N  +    G  S E     +S+STA  T+NP+YE WI  D LLLG
Sbjct: 63  SPCLPKIIMLTTQ-PNESIVENAGEPSQET----SSSSTAVVTVNPKYERWITTDLLLLG 122

Query: 125 WLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK 176
           WLYNSMTPEV  Q+MGF N+++ W A QDLFGIQS+AKED+L   F+ ++K
Sbjct: 123 WLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKK 168

BLAST of Lag0012931 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-39
Identity = 86/157 (54.78%), Postives = 112/157 (71.34%), Query Frame = 0

Query: 19  FNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEG 78
           F +PPLNQLL QITSIK+DR NFLLW+NL LPILRS KL  +L+G+KPCPP ++  T   
Sbjct: 22  FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTP 81

Query: 79  QNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAIDQLLLGWLYNSMTPEVATQV 138
            N               + G+++S ++ T+NP YE+WI +D+LLLGWLYNSM  +VA QV
Sbjct: 82  TN---------------IEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQV 141

Query: 139 MGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK 176
           MGF  S+E W AVQ+LFG+QS+A+ DYL  VF+Q+ K
Sbjct: 142 MGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCK 163

BLAST of Lag0012931 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-39
Identity = 83/167 (49.70%), Postives = 115/167 (68.86%), Query Frame = 0

Query: 9   LSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCP 68
           +S+    TTNF+NPPLNQ+L Q+ S+KLDR N+LLW+ L LPIL+S KL+GHL+ E  CP
Sbjct: 5   VSLIGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQCP 64

Query: 69  PKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAIDQLLLGWLYN 128
           PK++          + P  GAS         S ST T T+NP+++ W+  D LLLGW+YN
Sbjct: 65  PKFI----------INPTCGAS---------SRSTTTKTVNPKFDQWVTFDLLLLGWMYN 124

Query: 129 SMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK 176
           SMTPEVA Q+MGF  +++ W A+QDLFG+Q +A+ED+L   F+ ++K
Sbjct: 125 SMTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQK 152

BLAST of Lag0012931 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-38
Identity = 87/175 (49.71%), Postives = 118/175 (67.43%), Query Frame = 0

Query: 1   MANVNPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGH 60
           MAN  P   +  S+ +  F+NPPLNQ+L Q+T++KLDR N+LLWK L LPIL+  KLEGH
Sbjct: 1   MANAQPT-AAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  LSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAIDQ 120
           L+ E PCP  +V  +    N  +T  EGA ++     GAS+S     +NP +E W+  D 
Sbjct: 61  LTAETPCPSHFV-LSASSSNTTVTE-EGADAT----IGASSSITPRIVNPLFEQWVTTDL 120

Query: 121 LLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK 176
           LLLGWLYNSMTP+VA Q+MGF N ++ W A QD FG+QS+A+ED+L  + + +RK
Sbjct: 121 LLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016900937.11.2e-4355.17PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo][more]
KAA0067279.12.8e-4355.56uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa][more]
XP_022151683.11.4e-3954.78uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_031745012.12.4e-3949.70uncharacterized protein LOC116405217 [Cucumis sativus][more]
XP_016902203.12.1e-3849.71PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 102..172
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 16..74
NoneNo IPR availablePANTHERPTHR47481:SF3GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 102..172
coord: 16..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012931.1Lag0012931.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process