Lag0012851 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012851
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGDP-L-galactose phosphorylase 1-like
Locationchr1: 44958238 .. 44961118 (+)
RNA-Seq ExpressionLag0012851
SyntenyLag0012851
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATTCTCTTTCTTTTGGTGGCCATACCCAAAGCGCCGCAAGGCTTTAAAGGTATGTAACCTCTCCATTTGCTTTATCTTTAGCTTATTACTTCTCAACAGACATCTCAATAGATTTGAAACTGACCTAATTGTCAAGCAATAGAGAGATTTCACCCGTGCACTCTGTTGTTTTTTTGTGAAATTTGGATAAAAAATACAATTATCTTTACTCAAACGCCTAATTGATTAGAATTGATTTTACAGATTGTTTTTAGAACTTTTATTTTATTTTATTTTATTTGTCTTGCTATTTAAAAACAGCCAAACAGAGTTACCACATTGTGATGGAGAGTTTACTTTTGCTCTGGGTCAAAGAAGTGGAATGACATTGGTTTTATGGCAATGATTTTTGGGGGTTCCTAGGAATTAAAATGGAGGTGCTTGGAATGGAAGTTTTGTATTGGAGTAAGGTGTTACCAGCACTGAGTATGAAATGAAAAGAGTGAGAATGGTAGGGGAAAAAAAGCCTTAAGAAGCAAGACTGAGTTGGAGAGATGGGTAACAGTAGAACTGCAGGTTGTACTGGTGTTATGTCATTTGTAGACACTACGAGGAAGAGTTTTCTTCATTAGAATATCAGGGATGATGACCTTTTGTTAAATGTTAGGTGTTCTAGCTTGATTGTTTCAATGTTTGTTTGGTGTATTTCACCATCATTCTTTACTGATAACCAAGATTACTACCTTCAACTTTGTTGTCATTATTCTTTAGTGTTTTTTTGTATGACTAATATAGTACCAAGAATTAAATTACTTTTTATCTTAATCCTATTCTTATGCAAATCCATTGATTAAAAAAAAATCAGGTATTAGAATTCATCTTTATCAATTTGGTAGACATTTTCCTCTGGATATTACTTCCTTCAAGGCGCCTTCATTGTGTTAGTTCCTCTGGAAGAACAAACCATATTGGAGTCCCTACTTCTTGCCAAGGTATGCTAATATGCTTTAAGAAGGCATTTTTATTTCTTGGTGTTTTGGATGTATGTATAACGGTTCGTCTACATTGTAGTGGGAAGAGGGATTGTCTTAAGATGTTTTTAGATATGATGTGACTCTATCTGAAATTAAGGTAACGTAGATTACACTTTCTTTGAATAAAACCTCATTATTCATGGCTGGAAATAAGCTGCTTGAAAATGAAAAATTGCTAAGACCTGGGGGTTTTAACATTTTTTTTAAAAGCTTTTGCAGGTAATGATGGACAGGAGAAGAGGAATTACTCTTTTGTATTTCAAGTGGTGAAAATACTGAACCCAATATTATTTCTGCAGCTTTAGTGTCCAACATTTCCATCCTTGTTCTTATCAACGGTATAACTCAAATTTGGACTTATTGTGCTTTTTTTTTTCTCGTTGAAACATTGTTTGTTAGGCCTAAATTAAGTTTTTCATGCTTGCCACACTGGCTTTGTGATAATGTTAAACCATATCAAAACCAATTTTCTTTAAGCATCGTTTCATTGTTCTCTTATTCTCTCTAATACAGCATTGAATAAACTTAAGTTCATGAGTTATGGAAAGCAATTAATAGGGTACTTTATGACTTATTGATTCTTCCTTGCTCATTCTTGTTTTAGGAACTTTATCGAAATAAATTCTTATTCATGCAATGACATGGTACAAGGTTTTCTTTTTTCAGTTAATCCATTCGAAATAAGGCTAAAATCATGATAACATGCCTTAATTTTCTTTTCACTCTGCCTAAAGTTTTTTTAGGCCTTCAGCTGTGATTATTATCTAATATATGCCCCATTTTCTTTCATTTTTTCTCGACGAAGTTATTTGCAAAAGAAAAAGATTATTATCTAAGCTGGAGAAGTTGTATATGGCATAACCCAAACTTATTCTCCCGTCTCCAAAATGTCTAACTCATATGGAGAAATTTGAAGCGTCTGTTTAAAAATTTACAATCATCTATTAGGATAATGTGCTACCAATAATTAGGTATGCATGCATGCATAGTATACGTAGAATACAAGTCTTTCTACCCAATTAAAACAATCATCTATTGTTGGGGTCTTTAATGAATATTCAATTCACTCTAGCGTAATGAATTGTTTGATTTCTATATTCAACATTCTTTGCAATGTATTTTAGCATCTTGGAATTAGTGGATGCTGCAATTCTAGCGGATCAAATCGATCCTGTCAGACAAACAATATTGCACGTCGAGGGTGTCAAGGTAATTCAATAAGTTTTGTAAATTTGTAATTGGAATTCTCTTTTTTAGCTCTTTTTTTTTTAATTTTTGATGCATTAAATATTGTGTTTTTGGGTAATTTTTAGCTCTTTTTTGTGTTTTTGGGTAATTTTTAGCTCTTTTTTAATTCTTGATGCATTAAATATTGAACAAGTTTCATTCATCGCTTTTGTCTCTCCAGAATTGGAATGCTCTTGTGAATTGTGTTTTATGACCTTTTGGAAAACTACCCTAATTGGAATGCTCTTGTGAATTGTGTTTATGATTCTTTAATATGTCCAAGACAATTAAATTTATTATATTTTTGGATCTAATGAATCATTGAATTACGTATTCGGTGGAAATATTATCATACGAGCTGACTTATTGCAGGATACACCTAATGTAAATCGGGATTCAGCTTTGAAGAGGTTATTTTTCAATCTTAGATGCTCCTCTTGTAACAGCTAACTGATATAACAAATAAGTGTTTGCTAACCAAACATGACTGGTTTTTTAAGGGAGTGTATGGAAACTTGGTATTGAGAATAGAGACAAGACACTTTATTATATTTTTGGATCTAATGAATCATTGTATTGTGTATTTGGTGCTATTTTGTAGGGTTGTGCATAACTATGGCATTGCCCGACATTAA

mRNA sequence

ATGATGATTCTCTTTCTTTTGGTGGCCATACCCAAAGCGCCGCAAGGCTTTAAAGGAATTAAAATGGAGGTGCTTGGAATGGAAGTTTTGTATTGGAGTAAGGTGTTACCAGCACTGAACATTTTCCTCTGGATATTACTTCCTTCAAGGCGCCTTCATTGTGTTAGTTCCTCTGGAAGAACAAACCATATTGGAGTCCCTACTTCTTGCCAAGGAGAAGAGGAATTACTCTTTTGTATTTCAAGTGGTGAAAATACTGAACCCAATATTATTTCTGCAGCTTTAGTGTCCAACATTTCCATCCTTGTTCTTATCAACGCATTGAATAAACTTAAGTTCATGAGTTATGGAAAGCAATTAATAGGCATCTTGGAATTAGTGGATGCTGCAATTCTAGCGGATCAAATCGATCCTGTCAGACAAACAATATTGCACGTCGAGGGTGTCAAGGATACACCTAATGTAAATCGGGATTCAGCTTTGAAGAGGGTTGTGCATAACTATGGCATTGCCCGACATTAA

Coding sequence (CDS)

ATGATGATTCTCTTTCTTTTGGTGGCCATACCCAAAGCGCCGCAAGGCTTTAAAGGAATTAAAATGGAGGTGCTTGGAATGGAAGTTTTGTATTGGAGTAAGGTGTTACCAGCACTGAACATTTTCCTCTGGATATTACTTCCTTCAAGGCGCCTTCATTGTGTTAGTTCCTCTGGAAGAACAAACCATATTGGAGTCCCTACTTCTTGCCAAGGAGAAGAGGAATTACTCTTTTGTATTTCAAGTGGTGAAAATACTGAACCCAATATTATTTCTGCAGCTTTAGTGTCCAACATTTCCATCCTTGTTCTTATCAACGCATTGAATAAACTTAAGTTCATGAGTTATGGAAAGCAATTAATAGGCATCTTGGAATTAGTGGATGCTGCAATTCTAGCGGATCAAATCGATCCTGTCAGACAAACAATATTGCACGTCGAGGGTGTCAAGGATACACCTAATGTAAATCGGGATTCAGCTTTGAAGAGGGTTGTGCATAACTATGGCATTGCCCGACATTAA

Protein sequence

MMILFLLVAIPKAPQGFKGIKMEVLGMEVLYWSKVLPALNIFLWILLPSRRLHCVSSSGRTNHIGVPTSCQGEEELLFCISSGENTEPNIISAALVSNISILVLINALNKLKFMSYGKQLIGILELVDAAILADQIDPVRQTILHVEGVKDTPNVNRDSALKRVVHNYGIARH
Homology
[Close]
BLAST of Lag0012851 vs. NCBI nr
Match: XP_022140026.1 (GDP-L-galactose phosphorylase 1-like [Momordica charantia] >XP_022140027.1 GDP-L-galactose phosphorylase 1-like [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-05
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 68  TSC-QGEEELLFCISSGENTEPNIISAALVSNISILVLINA 108
           T+C + +EELLFCISSGENTEP +ISAALV N SILV+INA
Sbjct: 130 TNCFKRQEELLFCISSGENTEPELISAALVPNCSILVIINA 170

[Close]
BLAST of Lag0012851 vs. ExPASy Swiss-Prot
Match: Q8L725 (Metal tolerance protein C1 OS=Arabidopsis thaliana OX=3702 GN=MTPC1 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.7e-04
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 123 ILELVDAAILADQIDPVRQTILHVEGVK 151
           ILELVDAAI A Q++P+RQTIL VEGVK
Sbjct: 281 ILELVDAAIPAQQLEPIRQTILQVEGVK 308

The following BLAST results are available for this feature:
BLAST of Lag0012851 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022140026.14.9e-0575.61GDP-L-galactose phosphorylase 1-like [Momordica charantia] >XP_022140027.1 GDP-L... [more]
BLAST of Lag0012851 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L7259.7e-0478.57Metal tolerance protein C1 OS=Arabidopsis thaliana OX=3702 GN=MTPC1 PE=2 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012851.1Lag0012851.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
molecular_function GO:0080048 GDP-D-glucose phosphorylase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016779 nucleotidyltransferase activity