Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCAAGAGAACCAGAGAAGAATTTGAAGCCTCCGACATGGCCAAATGCTTGATGCTTCTCTCTTATGGGCCCAAAATCCAAGACCAAAACGCCGCCGTTTTCGAGTGCAAAACCTGCAACCGCCAGTTCCCCTCGTTTCAGGCTCTCGGCGGCCACCGGGCCAGCCACAAGCGCCCGCGGACGGCGGCCGACGAGCCGAAGGATGCGGCGGAATTGAAGCAGAAAGTGCACGAGTGTGGGCTCTGCGGGCAGGAGTTCTCTTCCGGGCAGGCGCTCGGCGGGCACATGCGGCGCCACCGGGTGACGGCGAACGGCGGTGGGTTTTCGGCGGCGGTGGCGGAGAAGATTCCGGTGCTGAAGAGGTCTGGGAGTACGAGAGTTATGTGCTTGGACCTCAATTTGACGCCATTGGAGAATGACTTGAAGTTGCTGTTTGGAAAAATGACTCCAAGAGTTGATCTTGTTCTTTGA
mRNA sequence
ATGGCCGCCAAGAGAACCAGAGAAGAATTTGAAGCCTCCGACATGGCCAAATGCTTGATGCTTCTCTCTTATGGGCCCAAAATCCAAGACCAAAACGCCGCCGTTTTCGAGTGCAAAACCTGCAACCGCCAGTTCCCCTCGTTTCAGGCTCTCGGCGGCCACCGGGCCAGCCACAAGCGCCCGCGGACGGCGGCCGACGAGCCGAAGGATGCGGCGGAATTGAAGCAGAAAGTGCACGAGTGTGGGCTCTGCGGGCAGGAGTTCTCTTCCGGGCAGGCGCTCGGCGGGCACATGCGGCGCCACCGGGTGACGGCGAACGGCGGTGGGTTTTCGGCGGCGGTGGCGGAGAAGATTCCGGTGCTGAAGAGGTCTGGGAGTACGAGAGTTATGTGCTTGGACCTCAATTTGACGCCATTGGAGAATGACTTGAAGTTGCTGTTTGGAAAAATGACTCCAAGAGTTGATCTTGTTCTTTGA
Coding sequence (CDS)
ATGGCCGCCAAGAGAACCAGAGAAGAATTTGAAGCCTCCGACATGGCCAAATGCTTGATGCTTCTCTCTTATGGGCCCAAAATCCAAGACCAAAACGCCGCCGTTTTCGAGTGCAAAACCTGCAACCGCCAGTTCCCCTCGTTTCAGGCTCTCGGCGGCCACCGGGCCAGCCACAAGCGCCCGCGGACGGCGGCCGACGAGCCGAAGGATGCGGCGGAATTGAAGCAGAAAGTGCACGAGTGTGGGCTCTGCGGGCAGGAGTTCTCTTCCGGGCAGGCGCTCGGCGGGCACATGCGGCGCCACCGGGTGACGGCGAACGGCGGTGGGTTTTCGGCGGCGGTGGCGGAGAAGATTCCGGTGCTGAAGAGGTCTGGGAGTACGAGAGTTATGTGCTTGGACCTCAATTTGACGCCATTGGAGAATGACTTGAAGTTGCTGTTTGGAAAAATGACTCCAAGAGTTGATCTTGTTCTTTGA
Protein sequence
MAAKRTREEFEASDMAKCLMLLSYGPKIQDQNAAVFECKTCNRQFPSFQALGGHRASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAVAEKIPVLKRSGSTRVMCLDLNLTPLENDLKLLFGKMTPRVDLVL
Homology
BLAST of Lag0012555 vs. NCBI nr
Match:
XP_038883310.1 (zinc finger protein ZAT11 [Benincasa hispida])
HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 136/165 (82.42%), Postives = 142/165 (86.06%), Query Frame = 0
Query: 1 MAAKRTREEFEASDMAKCLMLLSYG-----PKIQDQNAAVFECKTCNRQFPSFQALGGHR 60
MAAKR R+EFE SD+AK LML SYG PKIQ QN AVFECKTCNRQFPSFQALGGHR
Sbjct: 1 MAAKRIRQEFETSDIAKSLMLPSYGIETSNPKIQPQNVAVFECKTCNRQFPSFQALGGHR 60
Query: 61 ASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAVA 120
ASHKRPRTAA+EPKD AELKQK+HECGLCGQEFSSGQALGGHMRRHRVT + AVA
Sbjct: 61 ASHKRPRTAAEEPKDTAELKQKMHECGLCGQEFSSGQALGGHMRRHRVTP----VAVAVA 120
Query: 121 EKIPVLKRSGSTRVMC--LDLNLTPLENDLKLLFGKMTPRVDLVL 159
EKIPVLKRSGSTRV+C LDLNLTPLENDLKLLFGKM P VDLVL
Sbjct: 121 EKIPVLKRSGSTRVICLELDLNLTPLENDLKLLFGKMAPTVDLVL 161
BLAST of Lag0012555 vs. NCBI nr
Match:
XP_004142087.1 (zinc finger protein ZAT11 [Cucumis sativus])
HSP 1 Score: 251.9 bits (642), Expect = 3.6e-63
Identity = 132/166 (79.52%), Postives = 140/166 (84.34%), Query Frame = 0
Query: 1 MAAKRTREEFEASDMAKCLMLLSYG------PKIQDQNAAVFECKTCNRQFPSFQALGGH 60
MAAKR RE+FEASD+AK L LLSYG K Q QNAAVFECKTCNRQFPSFQALGGH
Sbjct: 1 MAAKRIREQFEASDIAKSLTLLSYGIQESSDLKFQPQNAAVFECKTCNRQFPSFQALGGH 60
Query: 61 RASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAV 120
RASHKRPRT+ +EPKD A+LKQK+HECGLCGQEFSSGQALGGHMRRHRV + AV
Sbjct: 61 RASHKRPRTSVEEPKDTADLKQKIHECGLCGQEFSSGQALGGHMRRHRVPP----LAVAV 120
Query: 121 AEKIPVLKRSGSTRVMC--LDLNLTPLENDLKLLFGKMTPRVDLVL 159
AEKIPVLKRSGSTRVMC LDLNLTPLENDLKLLFGKM P V+LVL
Sbjct: 121 AEKIPVLKRSGSTRVMCLDLDLNLTPLENDLKLLFGKMAPAVNLVL 162
BLAST of Lag0012555 vs. NCBI nr
Match:
XP_008447526.1 (PREDICTED: zinc finger protein ZAT11 [Cucumis melo])
HSP 1 Score: 251.9 bits (642), Expect = 3.6e-63
Identity = 131/166 (78.92%), Postives = 138/166 (83.13%), Query Frame = 0
Query: 1 MAAKRTREEFEASDMAKCLMLLSYG------PKIQDQNAAVFECKTCNRQFPSFQALGGH 60
MAAKR REEF SD+AK L LLSYG PK Q QN A+FECKTCNRQFPSFQALGGH
Sbjct: 1 MAAKRIREEFGTSDIAKSLTLLSYGIQESSDPKFQPQNVALFECKTCNRQFPSFQALGGH 60
Query: 61 RASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAV 120
RASHKRPRT+ +EPKD A+LKQK+HECGLCGQEFSSGQALGGHMRRHRV + AV
Sbjct: 61 RASHKRPRTSVEEPKDTADLKQKIHECGLCGQEFSSGQALGGHMRRHRVPP----LAVAV 120
Query: 121 AEKIPVLKRSGSTRVMC--LDLNLTPLENDLKLLFGKMTPRVDLVL 159
AEKIPVLKRSGSTRVMC LDLNLTPLENDLKLLFGKM P VDLVL
Sbjct: 121 AEKIPVLKRSGSTRVMCLDLDLNLTPLENDLKLLFGKMAPTVDLVL 162
BLAST of Lag0012555 vs. NCBI nr
Match:
KAE8649522.1 (hypothetical protein Csa_018106 [Cucumis sativus])
HSP 1 Score: 249.2 bits (635), Expect = 2.3e-62
Identity = 130/164 (79.27%), Postives = 138/164 (84.15%), Query Frame = 0
Query: 1 MAAKRTREEFEASDMAKCLMLLSYG------PKIQDQNAAVFECKTCNRQFPSFQALGGH 60
MAAKR RE+FEASD+AK L LLSYG K Q QNAAVFECKTCNRQFPSFQALGGH
Sbjct: 1 MAAKRIREQFEASDIAKSLTLLSYGIQESSDLKFQPQNAAVFECKTCNRQFPSFQALGGH 60
Query: 61 RASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAV 120
RASHKRPRT+ +EPKD A+LKQK+HECGLCGQEFSSGQALGGHMRRHRV + AV
Sbjct: 61 RASHKRPRTSVEEPKDTADLKQKIHECGLCGQEFSSGQALGGHMRRHRVPP----LAVAV 120
Query: 121 AEKIPVLKRSGSTRVMC--LDLNLTPLENDLKLLFGKMTPRVDL 157
AEKIPVLKRSGSTRVMC LDLNLTPLENDLKLLFGKM P V+L
Sbjct: 121 AEKIPVLKRSGSTRVMCLDLDLNLTPLENDLKLLFGKMAPAVNL 160
BLAST of Lag0012555 vs. NCBI nr
Match:
XP_023517898.1 (zinc finger protein ZAT11-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 131/162 (80.86%), Postives = 137/162 (84.57%), Query Frame = 0
Query: 1 MAAKRTREEFEASDMAKCLMLLSY--GPKIQDQNAAVFECKTCNRQFPSFQALGGHRASH 60
MAAKR R+EFEASD+AK LMLLS KI QNAAVF+CKTCNR F SFQALGGHRASH
Sbjct: 1 MAAKRIRQEFEASDIAKSLMLLSQTSNSKIPGQNAAVFQCKTCNRLFSSFQALGGHRASH 60
Query: 61 KRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRV-TANGGGFSAAVA-E 120
KRPRTAADEPKDAAE K K+HECGLCGQ FS+GQALGGHMRRHR+ T NGGGFS A E
Sbjct: 61 KRPRTAADEPKDAAESK-KMHECGLCGQVFSTGQALGGHMRRHRMTTTNGGGFSVVPAVE 120
Query: 121 KIPVLKRSGSTRVMCLDLNLTPLENDLKLLFGKMTPRVDLVL 159
KIPVL RSGS V CLDLNLTPLENDLKLLFGKM PRVDLVL
Sbjct: 121 KIPVLNRSGSMGVKCLDLNLTPLENDLKLLFGKMAPRVDLVL 161
BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match:
Q9SLD4 (Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 1.4e-33
Identity = 82/174 (47.13%), Postives = 108/174 (62.07%), Query Frame = 0
Query: 4 KRTREEFEAS----DMAKCLMLLSYGPKI---------QDQNAAVFECKTCNRQFPSFQA 63
KR R +FE S D+AKCLM+L+ + + + FECKTCN++F SFQA
Sbjct: 2 KRERSDFEESLKNIDIAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQA 61
Query: 64 LGGHRASHKRPRTAADEPKDAAELK-----QKVHECGLCGQEFSSGQALGGHMRRHRVTA 123
LGGHRASHK+P+ E KD L H+C +C Q F +GQALGGHMRRHR +
Sbjct: 62 LGGHRASHKKPKLTV-EQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSSM 121
Query: 124 N-GGGFSAAVAEKIPVLKRSGST-RVMCLDLNLTPLENDLKLLFGK-MTPRVDL 157
F + + +PVLKR GS+ R++ LDLNLTPLENDL+ +FGK P++D+
Sbjct: 122 TVEPSFISPMIPSMPVLKRCGSSKRILSLDLNLTPLENDLEYIFGKTFVPKIDM 174
BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match:
Q9LFG0 (Zinc finger protein ZAT18 OS=Arabidopsis thaliana OX=3702 GN=ZAT18 PE=2 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 1.8e-28
Identity = 78/173 (45.09%), Postives = 103/173 (59.54%), Query Frame = 0
Query: 4 KRTREEFEAS----DMAKCLMLL-------------SYGPKIQDQNAAVFECKTCNRQFP 63
KR R ++E S D+ + LM+L S G K N FECKTCNR+F
Sbjct: 2 KRDRSDYEESMKHIDIVESLMMLSRSFVVKQIDVKQSTGSKTNHNNH--FECKTCNRKFD 61
Query: 64 SFQALGGHRASHKRPRTAADEPKDAAELKQK-VHECGLCGQEFSSGQALGGHMRRHRVT- 123
SFQALGGHRASHK+P+ D+ + K+ +H+C +C Q F +GQALGGHMR+HR +
Sbjct: 62 SFQALGGHRASHKKPKLIVDQEQVKHRNKENDMHKCTICDQMFGTGQALGGHMRKHRTSM 121
Query: 124 ANGGGFSAAVAEKIPVLKRSGSTRVMCLDLNLTPLENDLKLLFGK-MTPRVDL 157
+V PV R S++ + LDLNLTPLENDL L+FGK + P++DL
Sbjct: 122 ITEQSIVPSVVYSRPVFNRCSSSKEI-LDLNLTPLENDLVLIFGKNLVPQIDL 171
BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match:
Q42410 (Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1)
HSP 1 Score: 109.4 bits (272), Expect = 3.8e-23
Identity = 69/144 (47.92%), Postives = 84/144 (58.33%), Query Frame = 0
Query: 16 AKCLMLLS-YGPKIQD--QNAAVFECKTCNRQFPSFQALGGHRASHKRPRTAADEPKDAA 75
A CLMLLS G + D VF CKTC +QF SFQALGGHRASHK+P A
Sbjct: 16 ANCLMLLSRVGQENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKPNNDALSSGLMK 75
Query: 76 ELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAVAEKIP-----VLKRSGS- 135
++K H C +CG EF GQALGGHMRRHR + G + +P LK+S S
Sbjct: 76 KVKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVTRALLPEPTVTTLKKSSSG 135
Query: 136 TRVMCLDLNLTPLEN-DLKLLFGK 150
RV CLDL+L ++N +LKL G+
Sbjct: 136 KRVACLDLSLGMVDNLNLKLELGR 159
BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match:
Q681X4 (Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 8.5e-23
Identity = 77/194 (39.69%), Postives = 98/194 (50.52%), Query Frame = 0
Query: 11 EASDMAKCLMLLSYG---------------PKIQDQNAA--VFECKTCNRQFPSFQALGG 70
E DMA CL++L+ G KI +N++ V+ECKTCNR F SFQALGG
Sbjct: 73 EEEDMAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGG 132
Query: 71 HRASHKRPRTAADE--------PKDAAELK------------------------QKVHEC 130
HRASHK+PRT+ +E PK +A + KVHEC
Sbjct: 133 HRASHKKPRTSTEEKTRLPLTQPKSSASEEGQNSHFKVSGSALASQASNIINKANKVHEC 192
Query: 131 GLCGQEFSSGQALGGHMRRHRVTANGGGFSAAVA--------EKIPV-LKRS--GSTRVM 145
+CG EF+SGQALGGHMRRHR AA A E+I + + RS + +
Sbjct: 193 SICGSEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKYL 252
BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match:
Q9LX85 (Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1)
HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19
Identity = 67/162 (41.36%), Postives = 78/162 (48.15%), Query Frame = 0
Query: 1 MAAKRTREEFEASDMAKCLMLLS-YGPKIQDQNAAVFECKTCNRQFPSFQALGGHRASHK 60
M A+ E AKCLMLLS G VF CKTC ++F SFQALGGHRASHK
Sbjct: 1 MVARSEEVEIVEDTAAKCLMLLSRVGECGGGGEKRVFRCKTCLKEFSSFQALGGHRASHK 60
Query: 61 RPRTAADEPKDAAELKQK------VHECGLCGQEFSSGQALGGHMRRHRVTANGGG---- 120
+ ++D P L K H C +CG EF GQALGGHMRRHR G
Sbjct: 61 KLINSSD-PSLLGSLSNKKTKTATSHPCPICGVEFPMGQALGGHMRRHRSEKASPGTLVT 120
Query: 121 --FSAAVAEKIPVLKRSGSTRVMCLDLNLTPLENDLKLLFGK 150
F + K S RV CLDL+ + KL G+
Sbjct: 121 RSFLPETTTVTTLKKSSSGKRVACLDLDSMESLVNWKLELGR 161
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SLD4 | 1.4e-33 | 47.13 | Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1 | [more] |
Q9LFG0 | 1.8e-28 | 45.09 | Zinc finger protein ZAT18 OS=Arabidopsis thaliana OX=3702 GN=ZAT18 PE=2 SV=1 | [more] |
Q42410 | 3.8e-23 | 47.92 | Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1 | [more] |
Q681X4 | 8.5e-23 | 39.69 | Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1 | [more] |
Q9LX85 | 3.3e-19 | 41.36 | Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1 | [more] |