Lag0012555 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012555
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzinc finger protein ZAT11
Locationchr1: 42158548 .. 42159024 (-)
RNA-Seq ExpressionLag0012555
SyntenyLag0012555
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCAAGAGAACCAGAGAAGAATTTGAAGCCTCCGACATGGCCAAATGCTTGATGCTTCTCTCTTATGGGCCCAAAATCCAAGACCAAAACGCCGCCGTTTTCGAGTGCAAAACCTGCAACCGCCAGTTCCCCTCGTTTCAGGCTCTCGGCGGCCACCGGGCCAGCCACAAGCGCCCGCGGACGGCGGCCGACGAGCCGAAGGATGCGGCGGAATTGAAGCAGAAAGTGCACGAGTGTGGGCTCTGCGGGCAGGAGTTCTCTTCCGGGCAGGCGCTCGGCGGGCACATGCGGCGCCACCGGGTGACGGCGAACGGCGGTGGGTTTTCGGCGGCGGTGGCGGAGAAGATTCCGGTGCTGAAGAGGTCTGGGAGTACGAGAGTTATGTGCTTGGACCTCAATTTGACGCCATTGGAGAATGACTTGAAGTTGCTGTTTGGAAAAATGACTCCAAGAGTTGATCTTGTTCTTTGA

mRNA sequence

ATGGCCGCCAAGAGAACCAGAGAAGAATTTGAAGCCTCCGACATGGCCAAATGCTTGATGCTTCTCTCTTATGGGCCCAAAATCCAAGACCAAAACGCCGCCGTTTTCGAGTGCAAAACCTGCAACCGCCAGTTCCCCTCGTTTCAGGCTCTCGGCGGCCACCGGGCCAGCCACAAGCGCCCGCGGACGGCGGCCGACGAGCCGAAGGATGCGGCGGAATTGAAGCAGAAAGTGCACGAGTGTGGGCTCTGCGGGCAGGAGTTCTCTTCCGGGCAGGCGCTCGGCGGGCACATGCGGCGCCACCGGGTGACGGCGAACGGCGGTGGGTTTTCGGCGGCGGTGGCGGAGAAGATTCCGGTGCTGAAGAGGTCTGGGAGTACGAGAGTTATGTGCTTGGACCTCAATTTGACGCCATTGGAGAATGACTTGAAGTTGCTGTTTGGAAAAATGACTCCAAGAGTTGATCTTGTTCTTTGA

Coding sequence (CDS)

ATGGCCGCCAAGAGAACCAGAGAAGAATTTGAAGCCTCCGACATGGCCAAATGCTTGATGCTTCTCTCTTATGGGCCCAAAATCCAAGACCAAAACGCCGCCGTTTTCGAGTGCAAAACCTGCAACCGCCAGTTCCCCTCGTTTCAGGCTCTCGGCGGCCACCGGGCCAGCCACAAGCGCCCGCGGACGGCGGCCGACGAGCCGAAGGATGCGGCGGAATTGAAGCAGAAAGTGCACGAGTGTGGGCTCTGCGGGCAGGAGTTCTCTTCCGGGCAGGCGCTCGGCGGGCACATGCGGCGCCACCGGGTGACGGCGAACGGCGGTGGGTTTTCGGCGGCGGTGGCGGAGAAGATTCCGGTGCTGAAGAGGTCTGGGAGTACGAGAGTTATGTGCTTGGACCTCAATTTGACGCCATTGGAGAATGACTTGAAGTTGCTGTTTGGAAAAATGACTCCAAGAGTTGATCTTGTTCTTTGA

Protein sequence

MAAKRTREEFEASDMAKCLMLLSYGPKIQDQNAAVFECKTCNRQFPSFQALGGHRASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAVAEKIPVLKRSGSTRVMCLDLNLTPLENDLKLLFGKMTPRVDLVL
Homology
BLAST of Lag0012555 vs. NCBI nr
Match: XP_038883310.1 (zinc finger protein ZAT11 [Benincasa hispida])

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 136/165 (82.42%), Postives = 142/165 (86.06%), Query Frame = 0

Query: 1   MAAKRTREEFEASDMAKCLMLLSYG-----PKIQDQNAAVFECKTCNRQFPSFQALGGHR 60
           MAAKR R+EFE SD+AK LML SYG     PKIQ QN AVFECKTCNRQFPSFQALGGHR
Sbjct: 1   MAAKRIRQEFETSDIAKSLMLPSYGIETSNPKIQPQNVAVFECKTCNRQFPSFQALGGHR 60

Query: 61  ASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAVA 120
           ASHKRPRTAA+EPKD AELKQK+HECGLCGQEFSSGQALGGHMRRHRVT      + AVA
Sbjct: 61  ASHKRPRTAAEEPKDTAELKQKMHECGLCGQEFSSGQALGGHMRRHRVTP----VAVAVA 120

Query: 121 EKIPVLKRSGSTRVMC--LDLNLTPLENDLKLLFGKMTPRVDLVL 159
           EKIPVLKRSGSTRV+C  LDLNLTPLENDLKLLFGKM P VDLVL
Sbjct: 121 EKIPVLKRSGSTRVICLELDLNLTPLENDLKLLFGKMAPTVDLVL 161

BLAST of Lag0012555 vs. NCBI nr
Match: XP_004142087.1 (zinc finger protein ZAT11 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 3.6e-63
Identity = 132/166 (79.52%), Postives = 140/166 (84.34%), Query Frame = 0

Query: 1   MAAKRTREEFEASDMAKCLMLLSYG------PKIQDQNAAVFECKTCNRQFPSFQALGGH 60
           MAAKR RE+FEASD+AK L LLSYG       K Q QNAAVFECKTCNRQFPSFQALGGH
Sbjct: 1   MAAKRIREQFEASDIAKSLTLLSYGIQESSDLKFQPQNAAVFECKTCNRQFPSFQALGGH 60

Query: 61  RASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAV 120
           RASHKRPRT+ +EPKD A+LKQK+HECGLCGQEFSSGQALGGHMRRHRV       + AV
Sbjct: 61  RASHKRPRTSVEEPKDTADLKQKIHECGLCGQEFSSGQALGGHMRRHRVPP----LAVAV 120

Query: 121 AEKIPVLKRSGSTRVMC--LDLNLTPLENDLKLLFGKMTPRVDLVL 159
           AEKIPVLKRSGSTRVMC  LDLNLTPLENDLKLLFGKM P V+LVL
Sbjct: 121 AEKIPVLKRSGSTRVMCLDLDLNLTPLENDLKLLFGKMAPAVNLVL 162

BLAST of Lag0012555 vs. NCBI nr
Match: XP_008447526.1 (PREDICTED: zinc finger protein ZAT11 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 3.6e-63
Identity = 131/166 (78.92%), Postives = 138/166 (83.13%), Query Frame = 0

Query: 1   MAAKRTREEFEASDMAKCLMLLSYG------PKIQDQNAAVFECKTCNRQFPSFQALGGH 60
           MAAKR REEF  SD+AK L LLSYG      PK Q QN A+FECKTCNRQFPSFQALGGH
Sbjct: 1   MAAKRIREEFGTSDIAKSLTLLSYGIQESSDPKFQPQNVALFECKTCNRQFPSFQALGGH 60

Query: 61  RASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAV 120
           RASHKRPRT+ +EPKD A+LKQK+HECGLCGQEFSSGQALGGHMRRHRV       + AV
Sbjct: 61  RASHKRPRTSVEEPKDTADLKQKIHECGLCGQEFSSGQALGGHMRRHRVPP----LAVAV 120

Query: 121 AEKIPVLKRSGSTRVMC--LDLNLTPLENDLKLLFGKMTPRVDLVL 159
           AEKIPVLKRSGSTRVMC  LDLNLTPLENDLKLLFGKM P VDLVL
Sbjct: 121 AEKIPVLKRSGSTRVMCLDLDLNLTPLENDLKLLFGKMAPTVDLVL 162

BLAST of Lag0012555 vs. NCBI nr
Match: KAE8649522.1 (hypothetical protein Csa_018106 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 2.3e-62
Identity = 130/164 (79.27%), Postives = 138/164 (84.15%), Query Frame = 0

Query: 1   MAAKRTREEFEASDMAKCLMLLSYG------PKIQDQNAAVFECKTCNRQFPSFQALGGH 60
           MAAKR RE+FEASD+AK L LLSYG       K Q QNAAVFECKTCNRQFPSFQALGGH
Sbjct: 1   MAAKRIREQFEASDIAKSLTLLSYGIQESSDLKFQPQNAAVFECKTCNRQFPSFQALGGH 60

Query: 61  RASHKRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAV 120
           RASHKRPRT+ +EPKD A+LKQK+HECGLCGQEFSSGQALGGHMRRHRV       + AV
Sbjct: 61  RASHKRPRTSVEEPKDTADLKQKIHECGLCGQEFSSGQALGGHMRRHRVPP----LAVAV 120

Query: 121 AEKIPVLKRSGSTRVMC--LDLNLTPLENDLKLLFGKMTPRVDL 157
           AEKIPVLKRSGSTRVMC  LDLNLTPLENDLKLLFGKM P V+L
Sbjct: 121 AEKIPVLKRSGSTRVMCLDLDLNLTPLENDLKLLFGKMAPAVNL 160

BLAST of Lag0012555 vs. NCBI nr
Match: XP_023517898.1 (zinc finger protein ZAT11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 131/162 (80.86%), Postives = 137/162 (84.57%), Query Frame = 0

Query: 1   MAAKRTREEFEASDMAKCLMLLSY--GPKIQDQNAAVFECKTCNRQFPSFQALGGHRASH 60
           MAAKR R+EFEASD+AK LMLLS     KI  QNAAVF+CKTCNR F SFQALGGHRASH
Sbjct: 1   MAAKRIRQEFEASDIAKSLMLLSQTSNSKIPGQNAAVFQCKTCNRLFSSFQALGGHRASH 60

Query: 61  KRPRTAADEPKDAAELKQKVHECGLCGQEFSSGQALGGHMRRHRV-TANGGGFSAAVA-E 120
           KRPRTAADEPKDAAE K K+HECGLCGQ FS+GQALGGHMRRHR+ T NGGGFS   A E
Sbjct: 61  KRPRTAADEPKDAAESK-KMHECGLCGQVFSTGQALGGHMRRHRMTTTNGGGFSVVPAVE 120

Query: 121 KIPVLKRSGSTRVMCLDLNLTPLENDLKLLFGKMTPRVDLVL 159
           KIPVL RSGS  V CLDLNLTPLENDLKLLFGKM PRVDLVL
Sbjct: 121 KIPVLNRSGSMGVKCLDLNLTPLENDLKLLFGKMAPRVDLVL 161

BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match: Q9SLD4 (Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-33
Identity = 82/174 (47.13%), Postives = 108/174 (62.07%), Query Frame = 0

Query: 4   KRTREEFEAS----DMAKCLMLLSYGPKI---------QDQNAAVFECKTCNRQFPSFQA 63
           KR R +FE S    D+AKCLM+L+    +         +   +  FECKTCN++F SFQA
Sbjct: 2   KRERSDFEESLKNIDIAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQA 61

Query: 64  LGGHRASHKRPRTAADEPKDAAELK-----QKVHECGLCGQEFSSGQALGGHMRRHRVTA 123
           LGGHRASHK+P+    E KD   L         H+C +C Q F +GQALGGHMRRHR + 
Sbjct: 62  LGGHRASHKKPKLTV-EQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSSM 121

Query: 124 N-GGGFSAAVAEKIPVLKRSGST-RVMCLDLNLTPLENDLKLLFGK-MTPRVDL 157
                F + +   +PVLKR GS+ R++ LDLNLTPLENDL+ +FGK   P++D+
Sbjct: 122 TVEPSFISPMIPSMPVLKRCGSSKRILSLDLNLTPLENDLEYIFGKTFVPKIDM 174

BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match: Q9LFG0 (Zinc finger protein ZAT18 OS=Arabidopsis thaliana OX=3702 GN=ZAT18 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-28
Identity = 78/173 (45.09%), Postives = 103/173 (59.54%), Query Frame = 0

Query: 4   KRTREEFEAS----DMAKCLMLL-------------SYGPKIQDQNAAVFECKTCNRQFP 63
           KR R ++E S    D+ + LM+L             S G K    N   FECKTCNR+F 
Sbjct: 2   KRDRSDYEESMKHIDIVESLMMLSRSFVVKQIDVKQSTGSKTNHNNH--FECKTCNRKFD 61

Query: 64  SFQALGGHRASHKRPRTAADEPKDAAELKQK-VHECGLCGQEFSSGQALGGHMRRHRVT- 123
           SFQALGGHRASHK+P+   D+ +     K+  +H+C +C Q F +GQALGGHMR+HR + 
Sbjct: 62  SFQALGGHRASHKKPKLIVDQEQVKHRNKENDMHKCTICDQMFGTGQALGGHMRKHRTSM 121

Query: 124 ANGGGFSAAVAEKIPVLKRSGSTRVMCLDLNLTPLENDLKLLFGK-MTPRVDL 157
                   +V    PV  R  S++ + LDLNLTPLENDL L+FGK + P++DL
Sbjct: 122 ITEQSIVPSVVYSRPVFNRCSSSKEI-LDLNLTPLENDLVLIFGKNLVPQIDL 171

BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match: Q42410 (Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-23
Identity = 69/144 (47.92%), Postives = 84/144 (58.33%), Query Frame = 0

Query: 16  AKCLMLLS-YGPKIQD--QNAAVFECKTCNRQFPSFQALGGHRASHKRPRTAADEPKDAA 75
           A CLMLLS  G +  D      VF CKTC +QF SFQALGGHRASHK+P   A       
Sbjct: 16  ANCLMLLSRVGQENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKPNNDALSSGLMK 75

Query: 76  ELKQKVHECGLCGQEFSSGQALGGHMRRHRVTANGGGFSAAVAEKIP-----VLKRSGS- 135
           ++K   H C +CG EF  GQALGGHMRRHR  +   G +      +P      LK+S S 
Sbjct: 76  KVKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVTRALLPEPTVTTLKKSSSG 135

Query: 136 TRVMCLDLNLTPLEN-DLKLLFGK 150
            RV CLDL+L  ++N +LKL  G+
Sbjct: 136 KRVACLDLSLGMVDNLNLKLELGR 159

BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match: Q681X4 (Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-23
Identity = 77/194 (39.69%), Postives = 98/194 (50.52%), Query Frame = 0

Query: 11  EASDMAKCLMLLSYG---------------PKIQDQNAA--VFECKTCNRQFPSFQALGG 70
           E  DMA CL++L+ G                KI  +N++  V+ECKTCNR F SFQALGG
Sbjct: 73  EEEDMAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGG 132

Query: 71  HRASHKRPRTAADE--------PKDAAELK------------------------QKVHEC 130
           HRASHK+PRT+ +E        PK +A  +                         KVHEC
Sbjct: 133 HRASHKKPRTSTEEKTRLPLTQPKSSASEEGQNSHFKVSGSALASQASNIINKANKVHEC 192

Query: 131 GLCGQEFSSGQALGGHMRRHRVTANGGGFSAAVA--------EKIPV-LKRS--GSTRVM 145
            +CG EF+SGQALGGHMRRHR         AA A        E+I + + RS     + +
Sbjct: 193 SICGSEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKYL 252

BLAST of Lag0012555 vs. ExPASy Swiss-Prot
Match: Q9LX85 (Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19
Identity = 67/162 (41.36%), Postives = 78/162 (48.15%), Query Frame = 0

Query: 1   MAAKRTREEFEASDMAKCLMLLS-YGPKIQDQNAAVFECKTCNRQFPSFQALGGHRASHK 60
           M A+    E      AKCLMLLS  G         VF CKTC ++F SFQALGGHRASHK
Sbjct: 1   MVARSEEVEIVEDTAAKCLMLLSRVGECGGGGEKRVFRCKTCLKEFSSFQALGGHRASHK 60

Query: 61  RPRTAADEPKDAAELKQK------VHECGLCGQEFSSGQALGGHMRRHRVTANGGG---- 120
           +   ++D P     L  K       H C +CG EF  GQALGGHMRRHR      G    
Sbjct: 61  KLINSSD-PSLLGSLSNKKTKTATSHPCPICGVEFPMGQALGGHMRRHRSEKASPGTLVT 120

Query: 121 --FSAAVAEKIPVLKRSGSTRVMCLDLNLTPLENDLKLLFGK 150
             F         + K S   RV CLDL+      + KL  G+
Sbjct: 121 RSFLPETTTVTTLKKSSSGKRVACLDLDSMESLVNWKLELGR 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038883310.11.7e-6582.42zinc finger protein ZAT11 [Benincasa hispida][more]
XP_004142087.13.6e-6379.52zinc finger protein ZAT11 [Cucumis sativus][more]
XP_008447526.13.6e-6378.92PREDICTED: zinc finger protein ZAT11 [Cucumis melo][more]
KAE8649522.12.3e-6279.27hypothetical protein Csa_018106 [Cucumis sativus][more]
XP_023517898.11.7e-6080.86zinc finger protein ZAT11-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q9SLD41.4e-3347.13Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1[more]
Q9LFG01.8e-2845.09Zinc finger protein ZAT18 OS=Arabidopsis thaliana OX=3702 GN=ZAT18 PE=2 SV=1[more]
Q424103.8e-2347.92Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1[more]
Q681X48.5e-2339.69Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1[more]
Q9LX853.3e-1941.36Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 79..101
e-value: 0.056
score: 22.6
coord: 36..58
e-value: 0.16
score: 21.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 38..58
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 81..101
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 79..101
score: 9.868132
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 36..63
score: 10.179878
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 78..102
e-value: 4.7E-10
score: 39.2
coord: 35..60
e-value: 6.6E-13
score: 48.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 34..101
e-value: 2.0E-10
score: 42.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..71
NoneNo IPR availablePANTHERPTHR26374ZINC FINGER PROTEIN ZAT5coord: 13..153
NoneNo IPR availablePANTHERPTHR26374:SF355AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATEDcoord: 13..153
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 35..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012555.1Lag0012555.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010200 response to chitin