|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGGTGGTGACGACGGCGGTGCTGTGGCGGATGCGGCTCGCCTCGGCTCTGCGGGCGGCTTTGGCCTGCGGCTTAGTCGGCGGCATTACGATGTTCGGACCGGCGCCGGTGAGGCAGTTACTGGCGTTCTCGGCGTTCTCTTACGTCACCACCATTTCGGTAGTACTTTCCGACGCCGTTTCGGTCGGCGACGCCGTGAGGGGTGTGTGGCACGTGATGTGGGCGGTGGCATCGGTGTTGCTCACGGCTGTGCCGTGCTTGTGGCTGATCGGACCGGAGCGGTTCACTAGTGGGGCGGCGGCTGCGGTGGCGGTGGCCGTCAGTGTGTTTGTGGTGGCGCTGCCGGAGCGGACCCACTTGCTGACTAAGCGAATCGCGTTTGGACAGCTGGTGATTGTGTACGTTGGAACGGTGATTCACGGCGGTCAGACGAGTTTCCTTATGCACCCAATTCGTGTTGCTTCCAGTACGGCCACCGGAGCTCTCGCCGCCGTCGCCGCCATGATGCTTCCATTCCCACGGCTGGCCTCGTTCCAGGTAAACCAATGCCCGGAAGCGGACTGA mRNA sequence ATGGCGGTGGTGACGACGGCGGTGCTGTGGCGGATGCGGCTCGCCTCGGCTCTGCGGGCGGCTTTGGCCTGCGGCTTAGTCGGCGGCATTACGATGTTCGGACCGGCGCCGGTGAGGCAGTTACTGGCGTTCTCGGCGTTCTCTTACGTCACCACCATTTCGGTAGTACTTTCCGACGCCGTTTCGGTCGGCGACGCCGTGAGGGGTGTGTGGCACGTGATGTGGGCGGTGGCATCGGTGTTGCTCACGGCTGTGCCGTGCTTGTGGCTGATCGGACCGGAGCGGTTCACTAGTGGGGCGGCGGCTGCGGTGGCGGTGGCCGTCAGTGTGTTTGTGGTGGCGCTGCCGGAGCGGACCCACTTGCTGACTAAGCGAATCGCGTTTGGACAGCTGGTGATTGTGTACGTTGGAACGGTGATTCACGGCGGTCAGACGAGTTTCCTTATGCACCCAATTCGTGTTGCTTCCAGTACGGCCACCGGAGCTCTCGCCGCCGTCGCCGCCATGATGCTTCCATTCCCACGGCTGGCCTCGTTCCAGGTAAACCAATGCCCGGAAGCGGACTGA Coding sequence (CDS) ATGGCGGTGGTGACGACGGCGGTGCTGTGGCGGATGCGGCTCGCCTCGGCTCTGCGGGCGGCTTTGGCCTGCGGCTTAGTCGGCGGCATTACGATGTTCGGACCGGCGCCGGTGAGGCAGTTACTGGCGTTCTCGGCGTTCTCTTACGTCACCACCATTTCGGTAGTACTTTCCGACGCCGTTTCGGTCGGCGACGCCGTGAGGGGTGTGTGGCACGTGATGTGGGCGGTGGCATCGGTGTTGCTCACGGCTGTGCCGTGCTTGTGGCTGATCGGACCGGAGCGGTTCACTAGTGGGGCGGCGGCTGCGGTGGCGGTGGCCGTCAGTGTGTTTGTGGTGGCGCTGCCGGAGCGGACCCACTTGCTGACTAAGCGAATCGCGTTTGGACAGCTGGTGATTGTGTACGTTGGAACGGTGATTCACGGCGGTCAGACGAGTTTCCTTATGCACCCAATTCGTGTTGCTTCCAGTACGGCCACCGGAGCTCTCGCCGCCGTCGCCGCCATGATGCTTCCATTCCCACGGCTGGCCTCGTTCCAGGTAAACCAATGCCCGGAAGCGGACTGA Protein sequence MAVVTTAVLWRMRLASALRAALACGLVGGITMFGPAPVRQLLAFSAFSYVTTISVVLSDAVSVGDAVRGVWHVMWAVASVLLTAVPCLWLIGPERFTSGAAAAVAVAVSVFVVALPERTHLLTKRIAFGQLVIVYVGTVIHGGQTSFLMHPIRVASSTATGALAAVAAMMLPFPRLASFQVNQCPEAD
Homology
BLAST of Lag0012518 vs. NCBI nr
Match: XP_038882782.1 (uncharacterized protein LOC120073933 isoform X2 [Benincasa hispida]) HSP 1 Score: 285.4 bits (729), Expect = 3.5e-73 Identity = 152/184 (82.61%), Postives = 167/184 (90.76%), Query Frame = 0
Query: 1 MAVV-TTAVLWRMRLASALRAALACGLVGGITMFGPAPVRQLLAFSAFSYVTTISVVLSD 60
MAVV TA++WRMRL ALRAALAC +VG +T+FGPAPVR+LLAFSAFSYVTTIS+VLSD
Sbjct: 1 MAVVAATAIVWRMRLGLALRAALACAIVGVVTIFGPAPVRRLLAFSAFSYVTTISIVLSD 60
Query: 61 AVSVGDAVRGVWHVMWAVASVLLTAVPCLWLIGPERFTSGAAAAVAVAVSVFVVALPERT 120
AVSVGDAVRGVWHVMWAV SV++ +VPCLWLIGP RFT A+AA+AV VS FVVALPERT
Sbjct: 61 AVSVGDAVRGVWHVMWAVVSVVVLSVPCLWLIGPGRFTGAASAALAVIVSAFVVALPERT 120
Query: 121 HLLTKRIAFGQLVIVYVGTVIHGGQTSFLMHPIRVASSTATGALAAVAAMMLPFPRLASF 180
HLLTKRIAFGQLVIVYVGTVIHGGQ SF+MHPIRVASSTA GALAAVAAMMLPFPRLA F
Sbjct: 121 HLLTKRIAFGQLVIVYVGTVIHGGQISFVMHPIRVASSTAAGALAAVAAMMLPFPRLAFF 180
Query: 181 QVNQ 184
Q+ +
Sbjct: 181 QIRK 184
BLAST of Lag0012518 vs. NCBI nr
Match: XP_038882781.1 (uncharacterized protein LOC120073933 isoform X1 [Benincasa hispida]) HSP 1 Score: 285.4 bits (729), Expect = 3.5e-73 Identity = 152/184 (82.61%), Postives = 167/184 (90.76%), Query Frame = 0
Query: 1 MAVV-TTAVLWRMRLASALRAALACGLVGGITMFGPAPVRQLLAFSAFSYVTTISVVLSD 60
MAVV TA++WRMRL ALRAALAC +VG +T+FGPAPVR+LLAFSAFSYVTTIS+VLSD
Sbjct: 1 MAVVAATAIVWRMRLGLALRAALACAIVGVVTIFGPAPVRRLLAFSAFSYVTTISIVLSD 60
Query: 61 AVSVGDAVRGVWHVMWAVASVLLTAVPCLWLIGPERFTSGAAAAVAVAVSVFVVALPERT 120
AVSVGDAVRGVWHVMWAV SV++ +VPCLWLIGP RFT A+AA+AV VS FVVALPERT
Sbjct: 61 AVSVGDAVRGVWHVMWAVVSVVVLSVPCLWLIGPGRFTGAASAALAVIVSAFVVALPERT 120
Query: 121 HLLTKRIAFGQLVIVYVGTVIHGGQTSFLMHPIRVASSTATGALAAVAAMMLPFPRLASF 180
HLLTKRIAFGQLVIVYVGTVIHGGQ SF+MHPIRVASSTA GALAAVAAMMLPFPRLA F
Sbjct: 121 HLLTKRIAFGQLVIVYVGTVIHGGQISFVMHPIRVASSTAAGALAAVAAMMLPFPRLAFF 180
Query: 181 QVNQ 184
Q+ +
Sbjct: 181 QIRK 184
BLAST of Lag0012518 vs. NCBI nr
Match: XP_023517881.1 (uncharacterized protein LOC111781489 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 283.9 bits (725), Expect = 1.0e-72 Identity = 146/186 (78.49%), Postives = 165/186 (88.71%), Query Frame = 0
Query: 2 AVVTTAVLWRMRLASALRAALACGLVGGITMFGPAPVRQLLAFSAFSYVTTISVVLSDAV 61
AV TTAVLWR+RL SALRAA AC L+GG+ MFGPA VRQLL+F AFSY TTIS+VL+DAV
Sbjct: 4 AVTTTAVLWRIRLGSALRAAFACSLIGGVMMFGPASVRQLLSFPAFSYFTTISIVLTDAV 63
Query: 62 SVGDAVRGVWHVMWAVASVLLTAVPCLWLIGPERFTSGAAAAVAVAVSVFVVALPERTHL 121
S+GDAVRGVWHVMWAV SVL+ +VPCL+L+GPERFT G +AAVAVA+S FVVALP RTH+
Sbjct: 64 SIGDAVRGVWHVMWAVVSVLVLSVPCLYLVGPERFTGGLSAAVAVAISAFVVALPMRTHV 123
Query: 122 LTKRIAFGQLVIVYVGTVIHGGQTSFLMHPIRVASSTATGALAAVAAMMLPFPRLASFQV 181
LTKRIAFGQLVIVYVGTV+HGGQTSF MHPIRVASSTA GALAAV AM+LP+PRLASFQ+
Sbjct: 124 LTKRIAFGQLVIVYVGTVVHGGQTSFFMHPIRVASSTAAGALAAVVAMVLPYPRLASFQI 183
Query: 182 NQCPEA 188
+ A
Sbjct: 184 RKLSRA 189
BLAST of Lag0012518 vs. NCBI nr
Match: XP_022972706.1 (uncharacterized protein LOC111471229 isoform X1 [Cucurbita maxima]) HSP 1 Score: 282.7 bits (722), Expect = 2.3e-72 Identity = 146/186 (78.49%), Postives = 165/186 (88.71%), Query Frame = 0
Query: 2 AVVTTAVLWRMRLASALRAALACGLVGGITMFGPAPVRQLLAFSAFSYVTTISVVLSDAV 61
AV TTAVLWR+RL SALRAA AC L+GG+ MFGPA V QLL+F AFSY TTIS+VL+DAV
Sbjct: 4 AVTTTAVLWRIRLGSALRAAFACSLIGGVMMFGPASVSQLLSFPAFSYFTTISIVLTDAV 63
Query: 62 SVGDAVRGVWHVMWAVASVLLTAVPCLWLIGPERFTSGAAAAVAVAVSVFVVALPERTHL 121
S+GDAVRGVWHVMWAV SVL+ +VPCL+L+GPERFT G +AAVAVA+S FVVALP RTH+
Sbjct: 64 SIGDAVRGVWHVMWAVVSVLVLSVPCLYLVGPERFTGGLSAAVAVAISAFVVALPMRTHV 123
Query: 122 LTKRIAFGQLVIVYVGTVIHGGQTSFLMHPIRVASSTATGALAAVAAMMLPFPRLASFQV 181
LTKRIAFGQLVIVYVGTVIHGGQTSF+MHPIRVASSTA GALAAV AM+LP+PRLASFQ+
Sbjct: 124 LTKRIAFGQLVIVYVGTVIHGGQTSFIMHPIRVASSTAAGALAAVVAMVLPYPRLASFQI 183
Query: 182 NQCPEA 188
+ A
Sbjct: 184 RKLSRA 189
BLAST of Lag0012518 vs. NCBI nr
Match: XP_022963013.1 (uncharacterized protein LOC111463346 [Cucurbita moschata]) HSP 1 Score: 282.3 bits (721), Expect = 3.0e-72 Identity = 145/186 (77.96%), Postives = 165/186 (88.71%), Query Frame = 0
Query: 2 AVVTTAVLWRMRLASALRAALACGLVGGITMFGPAPVRQLLAFSAFSYVTTISVVLSDAV 61
AV TTAVLWR+RL SALRAA AC L+GG+ MFGPA VR+LL+F AFSY TTIS+VL+DAV
Sbjct: 4 AVTTTAVLWRIRLGSALRAAFACSLIGGVMMFGPASVRKLLSFPAFSYFTTISIVLTDAV 63
Query: 62 SVGDAVRGVWHVMWAVASVLLTAVPCLWLIGPERFTSGAAAAVAVAVSVFVVALPERTHL 121
S+GDAVRGVWHVMWAV SVL+ +VPCL+L+GPERFT G +AAVAVA+S FVVALP RTH+
Sbjct: 64 SIGDAVRGVWHVMWAVVSVLVLSVPCLYLVGPERFTGGLSAAVAVAISAFVVALPMRTHV 123
Query: 122 LTKRIAFGQLVIVYVGTVIHGGQTSFLMHPIRVASSTATGALAAVAAMMLPFPRLASFQV 181
LTKRIAFGQLVIVYVGTV+HGGQTSF MHPIRVASSTA GALAAV AM+LP+PRLASFQ+
Sbjct: 124 LTKRIAFGQLVIVYVGTVVHGGQTSFFMHPIRVASSTAAGALAAVVAMVLPYPRLASFQI 183
Query: 182 NQCPEA 188
+ A
Sbjct: 184 RKLSRA 189
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038882782.1 | 3.5e-73 | 82.61 | uncharacterized protein LOC120073933 isoform X2 [Benincasa hispida] | [more] |
| XP_038882781.1 | 3.5e-73 | 82.61 | uncharacterized protein LOC120073933 isoform X1 [Benincasa hispida] | [more] |
| XP_023517881.1 | 1.0e-72 | 78.49 | uncharacterized protein LOC111781489 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022972706.1 | 2.3e-72 | 78.49 | uncharacterized protein LOC111471229 isoform X1 [Cucurbita maxima] | [more] |
| XP_022963013.1 | 3.0e-72 | 77.96 | uncharacterized protein LOC111463346 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PANTHER | PTHR30509 | P-HYDROXYBENZOIC ACID EFFLUX PUMP SUBUNIT-RELATED | coord: 5..183 |
| None | No IPR available | PANTHER | PTHR30509:SF34 | F3L24.34 PROTEIN | coord: 5..183 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0005886 |
plasma membrane |
| molecular_function |
GO:0022857 |
transmembrane transporter activity |
|
