Lag0012492 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012492
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	B-like cyclin
Location	chr1: 41593110 .. 41594125 (+)
RNA-Seq Expression	Lag0012492
Synteny	Lag0012492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATCTAGATCATGTGTTTCATCCAAGCTCCATTGAAAGAATGGAGGTGACATTACTAGAGGCATTGGAATGGCGTCTGTGTTGTCCAACAGCTTATTCTTACATTCAACTTTTGGCTTGGAAATTGGAATCCATTGAAGCTGAGGTTGAAGGAAACTTGATGGTGAAGATCACAGAGTTGCTTGATGGAGCTGTGTTAGATTACAGGCTCATGGCTTTCAGACCAAGTCTAATTGCTCTCTCCACAATTTGCTGCTGTTTAGATTTGGTTGCTCCAATCACTTTTCAACAATGTCTCTCTCATTTTTTGAGGCTGTTCAATCAACATTATCATAAGGTAAACAAGACTAAGATTCCACCTCGTTTGATTATGATTTTGTTTTGAAAATTTTAGTTTGGTTAATGTTTTCTAATCGATTCCATCTCTTTGTTTTTTACTCAAAATATAAGTTTTGTATGTGGGCCAAATTATACTTTTGGTTCTTGAAGTTTGACTTTGAATTTAAATTCCGTCCATGAGGTTTAGTGTTAAACTTATTGATCGTTAGTTGTCTCAATGGAAGGATGACATATATTGACTAATTAAGTGGGAGGTTTGACAAAAATATCAACATTTTATATATCTTTCATGTTTGACATTCTTTCTTTTCTACCGGTCAACGGAGTTTGATCTCACCAACTAAATTACCACGTCATCTGTTTGTTAGATCAGCTAATCGTTTACTGAGTTTAGGGATCAACCAATTTAGAACTACTATCCAAATCTGAACGACTAAAATGTTCATTTTAAAATCTCATGGATTAAATGGAAACCAAATTCAAACTTCTAAACCAAAAGTGTAATTTGCCTTTTTCTGATATGTATTTGGATTATTTGATTGATATTTCGATGTGGTTGGAAATCAATTATAGGATGAAATGATGAGATGTCGCACGATTATGGAAGCGGTTCAATCTTCTCGCTGCCCTCAAAGCCCCACATCAGTATTGATGAAGGAACATAGTTGCTGA

mRNA sequence

ATGGAGGATCTAGATCATGTGTTTCATCCAAGCTCCATTGAAAGAATGGAGGTGACATTACTAGAGGCATTGGAATGGCGTCTGTGTTGTCCAACAGCTTATTCTTACATTCAACTTTTGGCTTGGAAATTGGAATCCATTGAAGCTGAGGTTGAAGGAAACTTGATGGTGAAGATCACAGAGTTGCTTGATGGAGCTGTGTTAGATTACAGGCTCATGGCTTTCAGACCAAGTCTAATTGCTCTCTCCACAATTTGCTGCTGTTTAGATTTGGTTGCTCCAATCACTTTTCAACAATGTCTCTCTCATTTTTTGAGGCTGTTCAATCAACATTATCATAAGGATGAAATGATGAGATGTCGCACGATTATGGAAGCGGTTCAATCTTCTCGCTGCCCTCAAAGCCCCACATCAGTATTGATGAAGGAACATAGTTGCTGA

Coding sequence (CDS)

ATGGAGGATCTAGATCATGTGTTTCATCCAAGCTCCATTGAAAGAATGGAGGTGACATTACTAGAGGCATTGGAATGGCGTCTGTGTTGTCCAACAGCTTATTCTTACATTCAACTTTTGGCTTGGAAATTGGAATCCATTGAAGCTGAGGTTGAAGGAAACTTGATGGTGAAGATCACAGAGTTGCTTGATGGAGCTGTGTTAGATTACAGGCTCATGGCTTTCAGACCAAGTCTAATTGCTCTCTCCACAATTTGCTGCTGTTTAGATTTGGTTGCTCCAATCACTTTTCAACAATGTCTCTCTCATTTTTTGAGGCTGTTCAATCAACATTATCATAAGGATGAAATGATGAGATGTCGCACGATTATGGAAGCGGTTCAATCTTCTCGCTGCCCTCAAAGCCCCACATCAGTATTGATGAAGGAACATAGTTGCTGA

Protein sequence

MEDLDHVFHPSSIERMEVTLLEALEWRLCCPTAYSYIQLLAWKLESIEAEVEGNLMVKITELLDGAVLDYRLMAFRPSLIALSTICCCLDLVAPITFQQCLSHFLRLFNQHYHKDEMMRCRTIMEAVQSSRCPQSPTSVLMKEHSC

Homology

[Close]

BLAST of Lag0012492 vs. NCBI nr
Match: XP_023545107.1 (putative cyclin-D7-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 103/146 (70.55%), Postives = 116/146 (79.45%), Query Frame = 0


Query: 1   MED-LDHVFHPSSIERMEVTLLEALEWRLCCPTAYSYIQLLAWKLESIEAEVEGNLMVKI 60
           MED +DHVF  SSIERMEVTLL+AL+W LCCPT Y+YI LL   LES        LM  I
Sbjct: 141 MEDYMDHVFDESSIERMEVTLLKALDWHLCCPTPYAYIHLLGLNLES------SLLMANI 200

Query: 61  TELLDGAVLDYRLMAFRPSLIALSTICCCLDLVAPITFQQCLSHFLRLFNQHYHKDEMMR 120
           TELL GAVLD+RLM F+PSLIALSTI C LDL+ PIT Q  LS+F+RLFN H HKDEMM+
Sbjct: 201 TELLVGAVLDHRLMPFKPSLIALSTIWCSLDLLPPITSQPSLSYFMRLFN-HPHKDEMMK 260

Query: 121 CRTIMEAVQSSRCPQSPTSVLMKEHS 146
           CR ++EAVQSSRCPQSPTSVLMK+HS
Sbjct: 261 CRAVLEAVQSSRCPQSPTSVLMKDHS 279

[Close]

BLAST of Lag0012492 vs. NCBI nr
Match: XP_022978257.1 (putative cyclin-D7-1 [Cucurbita maxima] >XP_022978258.1 putative cyclin-D7-1 [Cucurbita maxima])

HSP 1 Score: 188.3 bits (477), Expect = 4.5e-44
Identity = 103/146 (70.55%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MED-LDHVFHPSSIERMEVTLLEALEWRLCCPTAYSYIQLLAWKLESIEAEVEGNLMVKI 60
           MED +DHVF  SSIERMEVTLL+AL+W LCCPT YSYI LL   LES        LM  I
Sbjct: 141 MEDYMDHVFDESSIERMEVTLLKALDWHLCCPTPYSYIHLLGLNLES------SLLMANI 200

Query: 61  TELLDGAVLDYRLMAFRPSLIALSTICCCLDLVAPITFQQCLSHFLRLFNQHYHKDEMMR 120
           TELL GAVLD+RLM F+PSLIALSTI C LDL+ PIT Q  LS+F+RLFN H HKDEMM+
Sbjct: 201 TELLVGAVLDHRLMPFKPSLIALSTIWCSLDLLPPITSQPSLSYFMRLFN-HPHKDEMMK 260

Query: 121 CRTIMEAVQSSRCPQSPTSVLMKEHS 146
           CR ++EAVQSSRCPQSPTSVLMK+ S
Sbjct: 261 CRAVLEAVQSSRCPQSPTSVLMKDQS 279

[Close]

BLAST of Lag0012492 vs. NCBI nr
Match: XP_038880932.1 (putative cyclin-D7-1 [Benincasa hispida])

HSP 1 Score: 188.0 bits (476), Expect = 5.9e-44
Identity = 103/149 (69.13%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 1   MED-LDHVFHPSSIERMEVTLLEALEWRLCCPTAYSYIQLLAWKL--ESIEAEVEGNLMV 60
           MED +DHVF  S IERME+ LLEAL+W L CPT Y YIQLL  KL   SI  E +  LMV
Sbjct: 181 MEDYMDHVFDQSCIERMEMILLEALDWHLSCPTPYYYIQLLGLKLLESSIGEEADYVLMV 240

Query: 61  KITELLDGAVLDYRLMAFRPSLIALSTICCCLDLVAPITFQQCLSHFLRLFNQHYHKDEM 120
           KI ELL GAVLDYRL+ F+PSLIA+S+I CCLDL+ PIT Q  LS+F+ LF+QH HKDEM
Sbjct: 241 KIKELLIGAVLDYRLIPFKPSLIAISSIWCCLDLLPPITSQSSLSYFMSLFDQH-HKDEM 300

Query: 121 MRCRTIMEAVQSSRCPQSPTSVLMKEHSC 147
           M+CR IMEAVQSS CPQSPTSVLMK H C
Sbjct: 301 MKCRAIMEAVQSSCCPQSPTSVLMKNHCC 328

[Close]

BLAST of Lag0012492 vs. NCBI nr
Match: KAG7033826.1 (putative cyclin-D7-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.6 bits (475), Expect = 7.8e-44
Identity = 102/146 (69.86%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 1   MED-LDHVFHPSSIERMEVTLLEALEWRLCCPTAYSYIQLLAWKLESIEAEVEGNLMVKI 60
           MED +DHVF  SSIERMEVTLL+AL+W LCCPT YSYI LL   LES        LM  I
Sbjct: 58  MEDYMDHVFDESSIERMEVTLLKALDWHLCCPTPYSYIHLLGLNLES------SPLMANI 117

Query: 61  TELLDGAVLDYRLMAFRPSLIALSTICCCLDLVAPITFQQCLSHFLRLFNQHYHKDEMMR 120
           TELL GAVLD+RLM F PSLIALSTI C LDL+ PIT Q  LS+F+RLFN H HKDEMM+
Sbjct: 118 TELLVGAVLDHRLMPFNPSLIALSTIWCSLDLLPPITSQPSLSYFMRLFN-HPHKDEMMK 177

Query: 121 CRTIMEAVQSSRCPQSPTSVLMKEHS 146
           CR ++EA+QSSRCPQSPTSVLMK+ S
Sbjct: 178 CRAVLEAIQSSRCPQSPTSVLMKDQS 196

[Close]

BLAST of Lag0012492 vs. NCBI nr
Match: XP_022950726.1 (putative cyclin-D7-1 [Cucurbita moschata])

HSP 1 Score: 187.6 bits (475), Expect = 7.8e-44
Identity = 102/146 (69.86%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MED-LDHVFHPSSIERMEVTLLEALEWRLCCPTAYSYIQLLAWKLESIEAEVEGNLMVKI 60
           MED +DHVF  SSIERMEVTLL+AL+W LCCPT YSYI LL   LES        LM  I
Sbjct: 141 MEDYMDHVFDESSIERMEVTLLKALDWHLCCPTPYSYIHLLGLNLES------SPLMANI 200

Query: 61  TELLDGAVLDYRLMAFRPSLIALSTICCCLDLVAPITFQQCLSHFLRLFNQHYHKDEMMR 120
           TELL GAVLD+RLM F+PSLIALSTI C LDL+ PIT Q  LS+F+RLFN H HKDEMM+
Sbjct: 201 TELLVGAVLDHRLMPFKPSLIALSTIWCSLDLLPPITSQPPLSYFMRLFN-HPHKDEMMK 260

Query: 121 CRTIMEAVQSSRCPQSPTSVLMKEHS 146
           CR ++EA+QSSRCPQSPTSVLMK+ S
Sbjct: 261 CRAVLEAIQSSRCPQSPTSVLMKDQS 279

[Close]

BLAST of Lag0012492 vs. ExPASy Swiss-Prot
Match: Q9LZM0 (Putative cyclin-D7-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD7-1 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 35/120 (29.17%), Postives = 70/120 (58.33%), Query Frame = 0


Query: 1   MEDLDHVFHPSSIERMEVTLLEALEWRLCCPTAYSYIQLLAWKLESIEAEVEGNLMVKIT 60
           ME L H+FH +++ +ME+ +L+ALEWR+   T+Y++ Q L  K+  +   +   +M +IT
Sbjct: 150 MEGLTHMFHVNTVAQMELIILKALEWRVNAVTSYTFSQTLVSKIGMVGDHM---IMNRIT 209

Query: 61  ELLDGAVLDYRLMAFRPSLIALSTICCCLDLVAPITFQQCLSHFLRLFNQHYHKDEMMRC 120
             L   + D +++ + PS++A + I   ++       + C    + LF Q+ HK+++++C
Sbjct: 210 NHLLDVICDLKMLQYPPSVVATAAIWILME------DKVCRESIMNLFEQN-HKEKIVKC 259

[Close]

BLAST of Lag0012492 vs. ExPASy Swiss-Prot
Match: Q8LGA1 (Cyclin-D4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD4-1 PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-05
Identity = 38/144 (26.39%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 3   DLDHVFHPSSIERMEVTLLEALEWRLCCPTAYSYIQLLAWKLESIEAEVEGNLMVKITEL 62
           D   VF   S++RME+ +L  L+WRL   T  SYI+    K+   + E    L+ +  ++
Sbjct: 152 DPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQV 211

Query: 63  LDGAVLDYRLMAFRPSLIALSTICCCLDLVAPITFQQCLSHFLRLFNQHYHKDEMMRCRT 122
           +         + FRPS +A +        +  + F    S F  LF+    K+ + +   
Sbjct: 212 IASTTKGIDFLEFRPSEVAAAVALSVSGELQRVHFDN--SSFSPLFSL-LQKERVKKIGE 271

Query: 123 IMEAVQSSRCPQSPTSVLMKEHSC 147
           ++E+  S  C Q+P  VL     C
Sbjct: 272 MIESDGSDLCSQTPNGVLEVSACC 292

[Close]

BLAST of Lag0012492 vs. ExPASy Swiss-Prot
Match: P42753 (Cyclin-D3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 45.4 bits (106), Expect = 6.2e-04
Identity = 25/94 (26.60%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 1   MEDLDHVFHPSSIERMEVTLLEALEWRLCCPTAYSYIQLLAWKLESIEAEVEGNLMVKIT 60
           +E+  +VF   +I+RME+ +L  LEW++   T  S++  +  +L  ++     + + K  
Sbjct: 159 VEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRL-GLKNNAHWDFLNKCH 218

Query: 61  ELLDGAVLDYRLMAFRPSLIALSTICCCLDLVAP 95
            LL   + D R + + PS++A +T+   ++ V P
Sbjct: 219 RLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDP 251

The following BLAST results are available for this feature:

BLAST of Lag0012492 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545107.1	1.2e-44	70.55	putative cyclin-D7-1 [Cucurbita pepo subsp. pepo]	[more]
XP_022978257.1	4.5e-44	70.55	putative cyclin-D7-1 [Cucurbita maxima] >XP_022978258.1 putative cyclin-D7-1 [Cu...	[more]
XP_038880932.1	5.9e-44	69.13	putative cyclin-D7-1 [Benincasa hispida]	[more]
KAG7033826.1	7.8e-44	69.86	putative cyclin-D7-1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022950726.1	7.8e-44	69.86	putative cyclin-D7-1 [Cucurbita moschata]	[more]

BLAST of Lag0012492 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZM0	1.1e-08	29.17	Putative cyclin-D7-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD7-1 PE=3 SV=1	[more]
Q8LGA1	1.1e-05	26.39	Cyclin-D4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD4-1 PE=1 SV=2	[more]
P42753	6.2e-04	26.60	Cyclin-D3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-1 PE=1 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004367	Cyclin, C-terminal domain	PFAM	PF02984	Cyclin_C	coord: 31..134 e-value: 6.7E-8 score: 32.6
None	No IPR available	GENE3D	1.10.472.10		coord: 30..125 e-value: 2.1E-18 score: 68.4
None	No IPR available	GENE3D	1.10.472.10		coord: 2..29 e-value: 2.1E-18 score: 68.4
None	No IPR available	PANTHER	PTHR10177:SF405	CYCLIN-D7-1-RELATED	coord: 1..133
IPR039361	Cyclin	PANTHER	PTHR10177	CYCLINS	coord: 1..133
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 34..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012492.1	Lag0012492.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division