Lag0012485 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012485
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein kinase domain-containing protein
Location	chr1: 41508702 .. 41509502 (-)
RNA-Seq Expression	Lag0012485
Synteny	Lag0012485

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAATGCATTTCACTCGATTCCCTCAACTTTCAACACAACCCAAAACCCGACTCCAACATAACCTTAGACAACGCAGCACAGATTCAGAAAAATGGAATCTTGGCCTTAACAGACCACTCACAAAGATTAAAATACGGCCACGCTTTCCATACCTTCCCTTTTCAGTTCAAGAACTCCTCCAATGGCACAACCTTCTCCTTCTCCATCTCTTTTGCTTTCACCATCATCCCTGAAAATCCTCATTCCAGCGGCCATGGCTTCACTTTCACCATCGCACCTTCTCAGAGCTTCCCAGGTTTTCCCAGACAGTTTCTGGGTCTTCCCAATTTAATCCATAATGTAGAAAATTTCCCCTCACAGAACACACAACAGCAGTATGTATATCTCGATTATGAACAAAAATTAAATCAATAATTTGCAGTCCAACTCAAAGAACAAACATAAATGCACCAGAAAGTGAAGGGAGAGCAGTAGACACAGATTTTATAGTGGTTCAATCCCAAAATCGGGATCTACATCCACTCTAGGTACTTCACTAATCAACCAATGTTCTCAATCAAGAAAATACAGAGGATATAACCTCATACAGTGAATATAAAGACAATCCACTTATCTCTTCTTCACAAACCAGCTGCTTCAAAGCATACCCAGCACAAAACAAGAGCCTCTGCCGCTTCACTCCCTGGAAGACGAATGCTCTCTATTCAGCAGCTTCAAGAAAACCTCTCAGAAGAAGATGATGATCGCACACCCTCTCTCTCCGATGCTCAATCGAAAAATAAGGAGGAAGAATAA

mRNA sequence

ATGAATCAATGCATTTCACTCGATTCCCTCAACTTTCAACACAACCCAAAACCCGACTCCAACATAACCTTAGACAACGCAGCACAGATTCAGAAAAATGGAATCTTGGCCTTAACAGACCACTCACAAAGATTAAAATACGGCCACGCTTTCCATACCTTCCCTTTTCAGTTCAAGAACTCCTCCAATGGCACAACCTTCTCCTTCTCCATCTCTTTTGCTTTCACCATCATCCCTGAAAATCCTCATTCCAGCGGCCATGGCTTCACTTTCACCATCGCACCTTCTCAGAGCTTCCCAGCTGCTTCAAAGCATACCCAGCACAAAACAAGAGCCTCTGCCGCTTCACTCCCTGGAAGACGAATGCTCTCTATTCAGCAGCTTCAAGAAAACCTCTCAGAAGAAGATGATGATCGCACACCCTCTCTCTCCGATGCTCAATCGAAAAATAAGGAGGAAGAATAA

Coding sequence (CDS)

ATGAATCAATGCATTTCACTCGATTCCCTCAACTTTCAACACAACCCAAAACCCGACTCCAACATAACCTTAGACAACGCAGCACAGATTCAGAAAAATGGAATCTTGGCCTTAACAGACCACTCACAAAGATTAAAATACGGCCACGCTTTCCATACCTTCCCTTTTCAGTTCAAGAACTCCTCCAATGGCACAACCTTCTCCTTCTCCATCTCTTTTGCTTTCACCATCATCCCTGAAAATCCTCATTCCAGCGGCCATGGCTTCACTTTCACCATCGCACCTTCTCAGAGCTTCCCAGCTGCTTCAAAGCATACCCAGCACAAAACAAGAGCCTCTGCCGCTTCACTCCCTGGAAGACGAATGCTCTCTATTCAGCAGCTTCAAGAAAACCTCTCAGAAGAAGATGATGATCGCACACCCTCTCTCTCCGATGCTCAATCGAAAAATAAGGAGGAAGAATAA

Protein sequence

MNQCISLDSLNFQHNPKPDSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSNGTTFSFSISFAFTIIPENPHSSGHGFTFTIAPSQSFPAASKHTQHKTRASAASLPGRRMLSIQQLQENLSEEDDDRTPSLSDAQSKNKEEE

Homology

[Close]

BLAST of Lag0012485 vs. NCBI nr
Match: XP_022143956.1 (L-type lectin-domain containing receptor kinase S.4-like [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 19  DSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSNGTTFSFSISFAFTII 78
           DS ++ D AA+IQKNGIL L DHS RL YGHAFH FPFQF+NSSNG  FSFS +FAF +I
Sbjct: 37  DSEMSFDKAARIQKNGILTLIDHSARLSYGHAFHKFPFQFRNSSNGRAFSFSTTFAFIVI 96

Query: 79  PENPHSSGHGFTFTIAPSQSF 100
           PE P+  G GFTF IAPS SF
Sbjct: 97  PEAPNFCGSGFTFAIAPSPSF 117

[Close]

BLAST of Lag0012485 vs. NCBI nr
Match: XP_028119311.1 (L-type lectin-domain containing receptor kinase S.4-like [Camellia sinensis] >THF96610.1 hypothetical protein TEA_004263 [Camellia sinensis var. sinensis])

HSP 1 Score: 101.7 bits (252), Expect = 5.9e-18
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 7   LDSLNFQHNPKPDSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSNGTT 66
           LD L +    + ++NITL   ++ QKNGIL LT+ + R K GHAFHT PF FKNSSNG+ 
Sbjct: 22  LDELFYSGFNELNTNITLSGISEFQKNGILRLTNETSR-KMGHAFHTSPFHFKNSSNGSA 81

Query: 67  FSFSISFAFTIIPENPHSSGHGFTFTIAPSQSFPAA 103
           FSFS SFAF I+PE P   GHG  FT++PS   P A
Sbjct: 82  FSFSTSFAFVIVPEYPKLGGHGLAFTLSPSIDLPTA 116

[Close]

BLAST of Lag0012485 vs. NCBI nr
Match: KAB5538786.1 (hypothetical protein DKX38_016319 [Salix brachista])

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-17
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 7   LDSLNFQHNPKPDSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSNGTT 66
           LD L F    +  SN++L+  A I+KNGIL LT+++QR   GHAF++ P +FKNSSNG +
Sbjct: 23  LDELYFPGFNRVASNMSLNGVAVIEKNGILRLTNNTQR-TVGHAFYSSPIKFKNSSNGKS 82

Query: 67  FSFSISFAFTIIPENPHSSGHGFTFTIAPSQSFPAA 103
           FSFS +FAFTI+PENP   GHGF FTI+ S+  P A
Sbjct: 83  FSFSTAFAFTIVPENPRIRGHGFAFTISTSKELPGA 117

[Close]

BLAST of Lag0012485 vs. NCBI nr
Match: XP_024465224.1 (L-type lectin-domain containing receptor kinase S.4 [Populus trichocarpa] >PNT17643.2 hypothetical protein POPTR_010G200600 [Populus trichocarpa])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-17
Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 7   LDSLNFQHNPKPDSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSNGTT 66
           LD L F       SN++L+ AA I+KNGIL LT+++Q    GHAF++ P +FKNSSNG +
Sbjct: 22  LDDLYFPGFNHVTSNMSLNGAAVIEKNGILRLTNNTQH-TVGHAFYSSPVKFKNSSNGKS 81

Query: 67  FSFSISFAFTIIPENPHSSGHGFTFTIAPSQSFPAA 103
           FSFS +FAFTI+PENP   GHGF FTI+ S+  P A
Sbjct: 82  FSFSTAFAFTIVPENPRIRGHGFAFTISTSKELPGA 116

[Close]

BLAST of Lag0012485 vs. NCBI nr
Match: KAG5237551.1 (L-type lectin-domain containing receptor kinase [Salix suchowensis])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-17
Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 7   LDSLNFQHNPKPDSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSNGTT 66
           LD L F    +  SN++L+  A I+KNGIL LT+++QR   GHAF + P +FKNSSNG +
Sbjct: 23  LDELYFPGFNRVTSNMSLNGVAVIEKNGILRLTNNTQR-TVGHAFCSSPIKFKNSSNGKS 82

Query: 67  FSFSISFAFTIIPENPHSSGHGFTFTIAPSQSFPAA 103
           FSFS +FAFTI+PENP   GHGF FTI+ S+  P A
Sbjct: 83  FSFSTAFAFTIVPENPRIRGHGFAFTISTSKELPGA 117

[Close]

BLAST of Lag0012485 vs. ExPASy Swiss-Prot
Match: O80939 (L-type lectin-domain containing receptor kinase IV.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK41 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.6e-12
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 6   SLDSLNFQHNP--KPDSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSN 65
           S  SLNF +N    P +++++     +  NG+L LT+ + + K GHAF+T P +FK+S N
Sbjct: 21  SSQSLNFAYNNGFNPPTDLSIQGITTVTPNGLLKLTNTTVQ-KTGHAFYTKPIRFKDSPN 80

Query: 66  GTTFSFSISFAFTIIPENPHSSGHGFTFTIAPSQSFP 101
           GT  SFS SF F I  +    SGHG  F +AP+ S P
Sbjct: 81  GTVSSFSTSFVFAIHSQIAILSGHGIAFVVAPNASLP 116

[Close]

BLAST of Lag0012485 vs. ExPASy Swiss-Prot
Match: O81292 (L-type lectin-domain containing receptor kinase IV.3 OS=Arabidopsis thaliana OX=3702 GN=LECRK43 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 6   SLDSLNFQHNP--KPDSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSN 65
           S  SLNF +N   +P +NI++   A +  NGIL LTD +  +  GHAF+T P +FK+S N
Sbjct: 23  SSQSLNFTYNSFHRPPTNISIQGIATVTSNGILKLTDKTV-ISTGHAFYTEPIRFKDSPN 82

Query: 66  GTTFSFSISFAFTIIPENPHSSGHGFTFTIAPSQSFPAA 103
            T  SFS +F   I    P  SGHG  F IAP+    +A
Sbjct: 83  DTVSSFSTTFVIGIYSGIPTISGHGMAFFIAPNPVLSSA 120

[Close]

BLAST of Lag0012485 vs. ExPASy Swiss-Prot
Match: Q9M345 (L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK42 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-10
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 6   SLDSLNFQHN--PKPDSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSN 65
           S  +LNF +N    P ++I+L   A +  NG+L LT+ S + K GHAF T   +FK+S N
Sbjct: 21  SSQNLNFTYNGFHPPLTDISLQGLATVTPNGLLKLTNTSVQ-KTGHAFCTERIRFKDSQN 80

Query: 66  GTTFSFSISFAFTIIPENPHSSGHGFTFTIAPSQSFPAA 103
           G   SFS +F F I  + P  SGHG  F +AP+   P A
Sbjct: 81  GNVSSFSTTFVFAIHSQIPTLSGHGIAFVVAPTLGLPFA 118

[Close]

BLAST of Lag0012485 vs. ExPASy Swiss-Prot
Match: O22834 (Probable L-type lectin-domain containing receptor kinase V.3 OS=Arabidopsis thaliana OX=3702 GN=LECRK53 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-09
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 33  NGILALTDHSQRLKYGHAFHTFPFQFKNSSNGTTFSFSISFAFTIIPENPHSSGHGFTFT 92
           NG   LT ++++  YG AF+  PF FKNS NG   SFS +F F I+PE+     HG  F 
Sbjct: 38  NGFTTLT-NTKKHAYGQAFNDEPFPFKNSVNGNMTSFSFTFFFAIVPEHIDKGSHGIAFV 97

Query: 93  IAPSQSFPAAS 104
           I+P++  P AS
Sbjct: 98  ISPTRGIPGAS 107

[Close]

BLAST of Lag0012485 vs. ExPASy Swiss-Prot
Match: O81291 (L-type lectin-domain containing receptor kinase IV.4 OS=Arabidopsis thaliana OX=3702 GN=LECRK44 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 18  PDSNITLDNAAQIQKNGILALTDHSQRLKYGHAFHTFPFQFKNSSNGTTFSFSISFAFTI 77
           P ++I++   A I  NG+L LT+ + +   GHAF+T P +FK+S NGT  SFS +F F I
Sbjct: 36  PPTDISILGIATITPNGLLKLTNTTMQ-STGHAFYTKPIRFKDSPNGTVSSFSTTFVFAI 95

Query: 78  IPENPHSSGHGFTFTIAPSQSFPAAS 104
             + P    HG  F IAP+   P  S
Sbjct: 96  HSQIP--IAHGMAFVIAPNPRLPFGS 118

The following BLAST results are available for this feature:

BLAST of Lag0012485 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143956.1	3.0e-22	69.14	L-type lectin-domain containing receptor kinase S.4-like [Momordica charantia]	[more]
XP_028119311.1	5.9e-18	55.21	L-type lectin-domain containing receptor kinase S.4-like [Camellia sinensis] >TH...	[more]
KAB5538786.1	1.0e-17	55.21	hypothetical protein DKX38_016319 [Salix brachista]	[more]
XP_024465224.1	2.9e-17	55.21	L-type lectin-domain containing receptor kinase S.4 [Populus trichocarpa] >PNT17...	[more]
KAG5237551.1	2.9e-17	55.21	L-type lectin-domain containing receptor kinase [Salix suchowensis]	[more]

BLAST of Lag0012485 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80939	8.6e-12	42.27	L-type lectin-domain containing receptor kinase IV.1 OS=Arabidopsis thaliana OX=...	[more]
O81292	1.9e-11	43.43	L-type lectin-domain containing receptor kinase IV.3 OS=Arabidopsis thaliana OX=...	[more]
Q9M345	2.1e-10	42.42	L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana OX=...	[more]
O22834	8.9e-09	45.07	Probable L-type lectin-domain containing receptor kinase V.3 OS=Arabidopsis thal...	[more]
O81291	3.4e-08	41.86	L-type lectin-domain containing receptor kinase IV.4 OS=Arabidopsis thaliana OX=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 148..154
None	No IPR available	GENE3D	2.60.120.200		coord: 8..144 e-value: 4.2E-20 score: 74.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..154
None	No IPR available	PANTHER	PTHR27007:SF302	L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4	coord: 16..104
None	No IPR available	PANTHER	PTHR27007	FAMILY NOT NAMED	coord: 16..104
IPR001220	Legume lectin domain	PFAM	PF00139	Lectin_legB	coord: 10..104 e-value: 9.5E-20 score: 71.2
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 8..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012485.1	Lag0012485.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004672	protein kinase activity