Lag0012462 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012462
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	glycine-rich protein 23-like
Location	chr1: 41295044 .. 41295679 (+)
RNA-Seq Expression	Lag0012462
Synteny	Lag0012462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGAACAGCATACATTGTGTTGCCCATTTTTGGGGTTTCTTTTGTTTCTGTCGCTATATTTCTGTTGTATGTGGTTTGCCGGAGGAAAGTTTCAAAGGAAAAAGCTACCACTGAGAGAAGAAGTCGAAGATATGTTGAAGGTGGAAATAGAATTGGCATAGTTGTGGATGATGGGAGTTATGTGGGTACATGCACCACGTTTTCGGGCGGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGTACTGTAGGAGATACAGGCAACGGCAACAACGTTGGAGGAGGCTGTGATGTCGGAGGTGGCGGTGATGGCGGAGGTGGTGGGGATTCTGGTGGTGGAGGGAATAGTGAGGTTGGAGGTGGAAATGGTGGCCTTAGTGGAGGAATAGGTGATAGCGGAGGCGATGGCGGAGATGGCGGTGGAGCTAGTTTTCACTACGTAGGCAGTGGTGGAGTGAGTTCTCACGACGGAGGAGGCGGAGGTGGAAGTGGTGGCCTTAGTGGAGGAACAGGTGATACTGGAGGCGATGGTGGAGATGGCGGTGGTGGTGGAGGGTTTTCTGATTCTGGAGGTGGTGGAGGGGGAGGGGGTTTTGATTTTGGAGGTGGTGGAGGATCATCTTTCTGGTGA

mRNA sequence

ATGGTTCGAACAGCATACATTGTGTTGCCCATTTTTGGGGTTTCTTTTGTTTCTGTCGCTATATTTCTGTTGTATGTGGTTTGCCGGAGGAAAGTTTCAAAGGAAAAAGCTACCACTGAGAGAAGAAGTCGAAGATATGTTGAAGGTGGAAATAGAATTGGCATAGTTGTGGATGATGGGAGTTATGTGGGTACATGCACCACGTTTTCGGGCGGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGTACTGTAGGAGATACAGGCAACGGCAACAACGTTGGAGGAGGCTGTGATGTCGGAGGTGGCGGTGATGGCGGAGGTGGTGGGGATTCTGGTGGTGGAGGGAATAGTGAGGTTGGAGGTGGAAATGGTGGCCTTAGTGGAGGAATAGGTGATAGCGGAGGCGATGGCGGAGATGGCGGTGGAGCTAGTTTTCACTACGTAGGCAGTGGTGGAGTGAGTTCTCACGACGGAGGAGGCGGAGGTGGAAGTGGTGGCCTTAGTGGAGGAACAGGTGATACTGGAGGCGATGGTGGAGATGGCGGTGGTGGTGGAGGGTTTTCTGATTCTGGAGGTGGTGGAGGGGGAGGGGGTTTTGATTTTGGAGGTGGTGGAGGATCATCTTTCTGGTGA

Coding sequence (CDS)

ATGGTTCGAACAGCATACATTGTGTTGCCCATTTTTGGGGTTTCTTTTGTTTCTGTCGCTATATTTCTGTTGTATGTGGTTTGCCGGAGGAAAGTTTCAAAGGAAAAAGCTACCACTGAGAGAAGAAGTCGAAGATATGTTGAAGGTGGAAATAGAATTGGCATAGTTGTGGATGATGGGAGTTATGTGGGTACATGCACCACGTTTTCGGGCGGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGTACTGTAGGAGATACAGGCAACGGCAACAACGTTGGAGGAGGCTGTGATGTCGGAGGTGGCGGTGATGGCGGAGGTGGTGGGGATTCTGGTGGTGGAGGGAATAGTGAGGTTGGAGGTGGAAATGGTGGCCTTAGTGGAGGAATAGGTGATAGCGGAGGCGATGGCGGAGATGGCGGTGGAGCTAGTTTTCACTACGTAGGCAGTGGTGGAGTGAGTTCTCACGACGGAGGAGGCGGAGGTGGAAGTGGTGGCCTTAGTGGAGGAACAGGTGATACTGGAGGCGATGGTGGAGATGGCGGTGGTGGTGGAGGGTTTTCTGATTCTGGAGGTGGTGGAGGGGGAGGGGGTTTTGATTTTGGAGGTGGTGGAGGATCATCTTTCTGGTGA

Protein sequence

MVRTAYIVLPIFGVSFVSVAIFLLYVVCRRKVSKEKATTERRSRRYVEGGNRIGIVVDDGSYVGTCTTFSGGYGGWGWDWTFSTVGDTGNGNNVGGGCDVGGGGDGGGGGDSGGGGNSEVGGGNGGLSGGIGDSGGDGGDGGGASFHYVGSGGVSSHDGGGGGGSGGLSGGTGDTGGDGGDGGGGGGFSDSGGGGGGGGFDFGGGGGSSFW

Homology

[Close]

BLAST of Lag0012462 vs. NCBI nr
Match: XP_022931867.1 (glycine-rich protein 23-like [Cucurbita moschata])

HSP 1 Score: 142.9 bits (359), Expect = 3.2e-30
Identity = 134/238 (56.30%), Postives = 148/238 (62.18%), Query Frame = 0


Query: 1   MVRTAYIVLPIFGVSFVSVAIFLLYVVCRRKVSKEKATTERRSRRYVEGGNRIGIVVDDG 60
           MVRTAYIVLPI G   +   + L  ++CRR+VSK  A+  R+S  YVEGGNRIGIVVDDG
Sbjct: 1   MVRTAYIVLPIVGAFIICFVMLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVDDG 60

Query: 61  SYVGTCTTFSGGYGGWGWDWTFSTVGDTGNGN-NVGGGCDVGGGGD-------------- 120
           SYVGT   F+GGYGGWGWDWTFS+VGDTGNGN N GGGCDVGGGG               
Sbjct: 61  SYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNGNGGGGCDVGGGGGDSEVGGRGSDIGRG 120

Query: 121 ---GGGGGDSGGGGNSEVGGGNGGLSGGIGDSGGDGGD----GGGASFHYVG-----SGG 180
              G G GD  G    E GGG+GG++    + GG GG     GGG SFH  G      GG
Sbjct: 121 DGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGGGTVSDRGGGGSFHMDGGHSNFGGG 180

Query: 181 VSSHDGGGGGGSGGLSGGTGDTGGDGGDGGGGGGFSDSGGGGGGGGFDFGGGGGSSFW 212
           VSSH GGGGG S               D GGGGG SD   GGGGGG+DFGGGGGSSFW
Sbjct: 181 VSSHGGGGGGAS--------------YDHGGGGGVSDY--GGGGGGYDFGGGGGSSFW 222

[Close]

BLAST of Lag0012462 vs. NCBI nr
Match: KAG6595345.1 (hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 5.4e-30
Identity = 134/238 (56.30%), Postives = 147/238 (61.76%), Query Frame = 0


Query: 1   MVRTAYIVLPIFGVSFVSVAIFLLYVVCRRKVSKEKATTERRSRRYVEGGNRIGIVVDDG 60
           MVRTAYIVLPI G   +S  + L  ++CRR+VSK  A+  R+S  YVEGGNRIGIVVDDG
Sbjct: 1   MVRTAYIVLPIVGAFIISFVMLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVDDG 60

Query: 61  SYVGTCTTFSGGYGGWGWDWTFSTVGDTGNGN-NVGGGCDVGGGGD-------------- 120
           SYVGT   F+GGYGGWGWDWTFS+VGDTGNGN N GGGCDVGGGG               
Sbjct: 61  SYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNGNGGGGCDVGGGGGDSEVGGRGSDIGRG 120

Query: 121 ---GGGGGDSGGGGNSEVGGGNGGLSGGIGDSGGDGG----DGGGASFHYVG-----SGG 180
              G G GD  G    E GGG GG++    + GG GG     GGG SFH  G      GG
Sbjct: 121 DGVGCGNGDGNGASFHEAGGGGGGIASSFDECGGGGGTVSDHGGGGSFHMDGGHSNFGGG 180

Query: 181 VSSHDGGGGGGSGGLSGGTGDTGGDGGDGGGGGGFSDSGGGGGGGGFDFGGGGGSSFW 212
           VSSH GGGGG S               D GGGGG SD   GGGGGG+DFGG GGSSFW
Sbjct: 181 VSSHGGGGGGAS--------------YDHGGGGGVSDY--GGGGGGYDFGGSGGSSFW 222

[Close]

BLAST of Lag0012462 vs. NCBI nr
Match: XP_022966633.1 (loricrin-like [Cucurbita maxima])

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-22
Identity = 124/217 (57.14%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 21  IFLLYVVCRRKVSKEKATTERRSRRYVEGGNRIGIVVDDGSYVGTCTTFSGGYGGWGWDW 80
           + L  ++CRR+VSK  A+  R+S  YVEGGNRIGIVVDDGSYVGT   F+GGYGGWGWDW
Sbjct: 1   MLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDW 60

Query: 81  TFSTVGDTGNGNNVGGGCDVGGGGD-----------------GGGGGDSGGGGNSEVGGG 140
           TFS+VGDTGNGN+ GGGCDVGGGG                  G G GD  G    E GGG
Sbjct: 61  TFSSVGDTGNGND-GGGCDVGGGGGDSEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGG 120

Query: 141 NGGLSGGIGDSGGDGG----DGGGASFHYVG-----SGGVSSHDGGGGGGSGGLSGGTGD 200
           +GG++    + GG GG     GGG SFH  G      GG SSH GGG G S    GG   
Sbjct: 121 DGGVASSFDECGGGGGTVSDHGGGGSFHMDGGHSNFGGGASSHGGGGDGASHDHGGG--- 180

Query: 201 TGGDGGDGGGGGGFSDSGGGGGGGGFDFGGGGGSSFW 212
            GG   D GGGGG SD   GGGGGGFDFGGGGGSSFW
Sbjct: 181 GGGASYDHGGGGGVSDY--GGGGGGFDFGGGGGSSFW 211

[Close]

BLAST of Lag0012462 vs. NCBI nr
Match: XP_023518097.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-20
Identity = 123/218 (56.42%), Postives = 139/218 (63.76%), Query Frame = 0


Query: 21  IFLLYVVCRRKVSKEKATTERRSRRYVEGGNRIGIVVDDGSYVGTCTTFSGGYGGWGWDW 80
           + L  ++CRR+VSK   +  R+S   VEGGNR+GIVVDDGSYVGT   F+GGYGGWGWDW
Sbjct: 1   MLLSCLLCRRRVSKGNGSRGRKSGSCVEGGNRLGIVVDDGSYVGTTPMFNGGYGGWGWDW 60

Query: 81  TFSTVGDTGNGNNVG-GGCDVGGGGD----GG-------------GGGDSGGGGNSEVGG 140
           TFS+VGD+GNGN  G GGCDVGGGG     GG             G GD  G    E GG
Sbjct: 61  TFSSVGDSGNGNGNGRGGCDVGGGGGDSEVGGRGCDVGRGDGVRCGNGDGNGASFHEAGG 120

Query: 141 GNGGLSGGIGDSGGDGG----DGGGASFHYVG-----SGGVSSHDGGGGGGSGGLSGGTG 200
           G+GG++    + GG GG     GGG SFH  G      GGVSSH GGGGGG+    GG G
Sbjct: 121 GDGGVASSFDECGGGGGTVSDHGGGGSFHMDGGHSNFGGGVSSH-GGGGGGANYDHGGGG 180

Query: 201 DTGGDGGDGGGGGGFSDSGGGGGGGGFDFGGGGGSSFW 212
             GG   D GGGGG SD   GGGGGG+DFGGGGGSSFW
Sbjct: 181 --GGASYDHGGGGGVSDY--GGGGGGYDFGGGGGSSFW 213

[Close]

BLAST of Lag0012462 vs. ExPASy TrEMBL
Match: A0A6J1EUX9 (glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-30
Identity = 134/238 (56.30%), Postives = 148/238 (62.18%), Query Frame = 0


Query: 1   MVRTAYIVLPIFGVSFVSVAIFLLYVVCRRKVSKEKATTERRSRRYVEGGNRIGIVVDDG 60
           MVRTAYIVLPI G   +   + L  ++CRR+VSK  A+  R+S  YVEGGNRIGIVVDDG
Sbjct: 1   MVRTAYIVLPIVGAFIICFVMLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVDDG 60

Query: 61  SYVGTCTTFSGGYGGWGWDWTFSTVGDTGNGN-NVGGGCDVGGGGD-------------- 120
           SYVGT   F+GGYGGWGWDWTFS+VGDTGNGN N GGGCDVGGGG               
Sbjct: 61  SYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNGNGGGGCDVGGGGGDSEVGGRGSDIGRG 120

Query: 121 ---GGGGGDSGGGGNSEVGGGNGGLSGGIGDSGGDGGD----GGGASFHYVG-----SGG 180
              G G GD  G    E GGG+GG++    + GG GG     GGG SFH  G      GG
Sbjct: 121 DGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGGGTVSDRGGGGSFHMDGGHSNFGGG 180

Query: 181 VSSHDGGGGGGSGGLSGGTGDTGGDGGDGGGGGGFSDSGGGGGGGGFDFGGGGGSSFW 212
           VSSH GGGGG S               D GGGGG SD   GGGGGG+DFGGGGGSSFW
Sbjct: 181 VSSHGGGGGGAS--------------YDHGGGGGVSDY--GGGGGGYDFGGGGGSSFW 222

[Close]

BLAST of Lag0012462 vs. ExPASy TrEMBL
Match: A0A6J1HSN5 (loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 9.0e-23
Identity = 124/217 (57.14%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 21  IFLLYVVCRRKVSKEKATTERRSRRYVEGGNRIGIVVDDGSYVGTCTTFSGGYGGWGWDW 80
           + L  ++CRR+VSK  A+  R+S  YVEGGNRIGIVVDDGSYVGT   F+GGYGGWGWDW
Sbjct: 1   MLLSCLLCRRRVSKGDASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDW 60

Query: 81  TFSTVGDTGNGNNVGGGCDVGGGGD-----------------GGGGGDSGGGGNSEVGGG 140
           TFS+VGDTGNGN+ GGGCDVGGGG                  G G GD  G    E GGG
Sbjct: 61  TFSSVGDTGNGND-GGGCDVGGGGGDSEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGG 120

Query: 141 NGGLSGGIGDSGGDGG----DGGGASFHYVG-----SGGVSSHDGGGGGGSGGLSGGTGD 200
           +GG++    + GG GG     GGG SFH  G      GG SSH GGG G S    GG   
Sbjct: 121 DGGVASSFDECGGGGGTVSDHGGGGSFHMDGGHSNFGGGASSHGGGGDGASHDHGGG--- 180

Query: 201 TGGDGGDGGGGGGFSDSGGGGGGGGFDFGGGGGSSFW 212
            GG   D GGGGG SD   GGGGGGFDFGGGGGSSFW
Sbjct: 181 GGGASYDHGGGGGVSDY--GGGGGGFDFGGGGGSSFW 211

The following BLAST results are available for this feature:

BLAST of Lag0012462 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931867.1	3.2e-30	56.30	glycine-rich protein 23-like [Cucurbita moschata]	[more]
KAG6595345.1	5.4e-30	56.30	hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022966633.1	1.9e-22	57.14	loricrin-like [Cucurbita maxima]	[more]
XP_023518097.1	5.1e-20	56.42	glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0012462 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0012462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUX9	1.5e-30	56.30	glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 ...	[more]
A0A6J1HSN5	9.0e-23	57.14	loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1	[more]

BLAST of Lag0012462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012462.1	Lag0012462.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane