Lag0012373 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012373
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	30S ribosomal protein S31, chloroplastic
Location	chr1: 40532511 .. 40533305 (+)
RNA-Seq Expression	Lag0012373
Synteny	Lag0012373

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCACTTCCTTTCGGAATTCTTCAGGCCGCGTCTCAATCTCCAACTCTTGCTCCATGTTTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAAAATCTCTGCATTCATCTACTGCTTCTCTTGCAATCTCTGCAACTTCGTCGCCTTCTTCAATTCCCGCTGGTATGCATTTGTTGGCTTGTTTTCAAGTGTTCACGTCTCTTCTGTACACATTCGATTGCTTAATTTTTGTTCTTTGTTTTGCTTTTTCAGTGTATTGTGGCCGAGGCGATAAGAAAACGGAGAAAGGAAAGCGATTCAATCACTCATACGGAAATGTATGTAGTTCTCTCTTCTCTCTTTGTTTTGTTCGTTTTCTTATCTGATTGCGAGTTTCTTTTTTGTCTTGGATGAGTTATCTTTCGTTTTTTATTTTGAATTTTTTGGGGGGAAAATGTTCAGGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACTCCGAGAGTACCAAGTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATTAAGATCGAGATTGACGAGTCTCTTTTCTCTAGTTAGTCATGAAGCAACATAATTCTGTTTATTTGAATGTGTTTTTCTGAATCCAGAAGGTACTTCCACTTCTTATATTCGCATTATTTTTGTATGAATTCTTCTGTCGCTCATTGGCTTCTCGAATCTGTTGATCATTTTCAGTCTACTGGAAGTATGCTCTCTCTGTCTCTTGCTTTTTAACCATTTCTGAGCTAGACTTGACTACTGGTGCTTCATAG

mRNA sequence

ATGGCTTCACTTCCTTTCGGAATTCTTCAGGCCGCGTCTCAATCTCCAACTCTTGCTCCATGTTTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAAAATCTCTGCATTCATCTACTGCTTCTCTTGCAATCTCTGCAACTTCGTCGCCTTCTTCAATTCCCGCTGTGTATTGTGGCCGAGGCGATAAGAAAACGGAGAAAGGAAAGCGATTCAATCACTCATACGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACTCCGAGAGTACCAAGTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATTAAGATCGAGATTGACGAGTCTCTTTTCTCTATCTACTGGAAGTATGCTCTCTCTGTCTCTTGCTTTTTAACCATTTCTGAGCTAGACTTGACTACTGGTGCTTCATAG

Coding sequence (CDS)

ATGGCTTCACTTCCTTTCGGAATTCTTCAGGCCGCGTCTCAATCTCCAACTCTTGCTCCATGTTTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAAAATCTCTGCATTCATCTACTGCTTCTCTTGCAATCTCTGCAACTTCGTCGCCTTCTTCAATTCCCGCTGTGTATTGTGGCCGAGGCGATAAGAAAACGGAGAAAGGAAAGCGATTCAATCACTCATACGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACTCCGAGAGTACCAAGTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATTAAGATCGAGATTGACGAGTCTCTTTTCTCTATCTACTGGAAGTATGCTCTCTCTGTCTCTTGCTTTTTAACCATTTCTGAGCTAGACTTGACTACTGGTGCTTCATAG

Protein sequence

MASLPFGILQAASQSPTLAPCFFSFSKSETLGKSLHSSTASLAISATSSPSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPSPPSPPRKDKFDDDEKIKIEIDESLFSIYWKYALSVSCFLTISELDLTTGAS

Homology

[Close]

BLAST of Lag0012373 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-50
Identity = 107/120 (89.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MASLPFGILQAASQSPTLAPCFFSFSKSETLGKSLHSSTASLAISATSSPSSIPAVYCGR 60
           MASLPFG+LQAASQSPTL+P FFSFSKSETLG SL +STASLA SATSSPSS+PAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPSPPSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVP+PP+PPRKDKF+DDEKIKIEID+SLF+
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]

BLAST of Lag0012373 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-48
Identity = 108/121 (89.26%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MASLPFGILQAASQSPTLAPCFFSFSKSETLGKSLH-SSTASLAISATSSPSSIPAVYCG 60
           MASLPFG+LQAASQSPTL+P FFSFSKSETLG SL  SSTASLA S TSSPSSIPAVYCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPSPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRFN SYGNARPR+KTKGRGTPRVP+PPSPPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

[Close]

BLAST of Lag0012373 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MASLPFGILQAASQSPTLAPCFFSFSKSETLGKSLH-SSTASLAISATSSPSSIPAVYCG 60
           M SLPFG+LQA SQSP+L P +FSFSKSETLG SL  SSTASLAIS  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPSPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP+PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of Lag0012373 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 3.7e-46
Identity = 104/120 (86.67%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 1   MASLPFGILQAASQSPTLAPCFFSFSKSETLGKSLHSSTASLAISATSSPSSIPAVYCGR 60
           MASLPFG+LQA  QSPTL+P  FSFSKSETLG SL +ST    ISATSSPSSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST---GISATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPSPPSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVP+PPSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Lag0012373 vs. NCBI nr
Match: XP_022931892.1 (30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545.1 30S ribosomal protein S31, chloroplastic [Cucurbita maxima] >KAG6595386.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027394.1 30S ribosomal protein S31, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-45
Identity = 103/120 (85.83%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 1   MASLPFGILQAASQSPTLAPCFFSFSKSETLGKSLHSSTASLAISATSSPSSIPAVYCGR 60
           MASLPFG+LQA  QSPTL+P  FSFSKSETLG SL +ST +   SATSSPSSIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPSPPSPPRKDKFDDDEKIKIEIDESLFS 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVP+PPSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of Lag0012373 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.3e-29
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 24  SFSKSETLGKSLHSSTASLAISATSSPSSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDK 83
           S S SET G SL   T   ++S TSS SSIP VYCGRGD+KT KGKRFNHS+GNARPR+K
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLS-TSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 81

Query: 84  TKGRGTPRVPSPPSPPRKDKFDDDEKIKIEIDESLFS 121
           +KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLFS
Sbjct: 82  SKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117

[Close]

BLAST of Lag0012373 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 1   MASLPFGILQAASQSPTLAPCFFSFSKSETL-GKSLHS-STASLAISATSSPSSIPAVYC 60
           MASL  G    A  S +     FSFS S+++ G SL S  T SL+ S ++SP ++P +YC
Sbjct: 1   MASLLLGTPSMACHSVS-----FSFSHSQSVAGVSLSSPPTLSLSSSVSTSP-ALPLIYC 60

Query: 61  GRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPSPPSPPRKDKFD 106
           GRGD+KT KGKRFNHS+GNARP++K KGRG P+ P  P      K D
Sbjct: 61  GRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 101

[Close]

BLAST of Lag0012373 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 9.6e-05
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 55  AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGTPRVPSPPSPP 100
           AV CGRGDKKT++GKRF  SYGNARP R+K   R   RV  P S P
Sbjct: 29  AVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTP 74

The following BLAST results are available for this feature:

BLAST of Lag0012373 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151467.1	1.4e-50	89.17	30S ribosomal protein S31, chloroplastic [Momordica charantia]	[more]
XP_038882305.1	2.3e-48	89.26	30S ribosomal protein S31, chloroplastic [Benincasa hispida]	[more]
XP_008449316.1	1.1e-47	87.60	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1...	[more]
XP_023517799.1	3.7e-46	86.67	30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022931892.1	1.1e-45	85.83	30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545...	[more]

BLAST of Lag0012373 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80439	3.3e-29	72.16	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]
P47910	3.0e-14	50.47	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
P47909	9.6e-05	63.04	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 17..102 e-value: 9.9E-32 score: 109.1
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 59..83 e-value: 1.9E-10 score: 38.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..108
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..120
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012373.1	Lag0012373.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding