Lag0012286 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012286
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 39522704 .. 39526013 (+)
RNA-Seq Expression	Lag0012286
Synteny	Lag0012286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGGCCGAGGCCGACCATCCCCCTTCGAAAAGGCCAGGTATGGAACTAGTCCTTCTCGCTCGAAAAATGCAACGCTTGAGGTAATAAATGCCCATGTCGAGTGGAGGCTGGGAATAAGGGGTAGGTTAAGGCTATTCCGTTCCTTTGTTGTAATCATCATGCAACTTTCCCACTATTTTCCAGTAAGGACTGACATATGAATGCAGGGGGCTAAGCACTGAGCTAACAGGAGCTAGAGGCCCAGGCCGATCCGGGCCTCCTCCCTTGTTTTCCTTTTGCAGGAATTAACTTTTCAATGCAGGGTTGTGAAGTTTTCTGTTTTTCCTATTGTTAATTATGGAATGAAGCACTCCGAACGACCCAGCTAAAATGAAAAATGTTGTGCTCGGCCTCTTCCCGAGGCCGAGGCCGACCAAAGAGGCCCTCCGGCCACTTCTGTAACTTATCACTCTTCTCATTTCCGTTTCGCCTAACCCCTACTCAGGGAGTTTTTACTTTGCATAGCTCGCCCTCTCTTGCAGGATAACAAAGAAGTCATACAAAAGTCAGCACGAGACGAGAGTTGTACTCTTAAATTTGGCTTAAGGAGCTCGGCCTATAGCATTAAAGTCGCACCTGAATCTCAATTCAAGAGTGGGGGCTTAATGTTATAGGTGATTTTGGACCACACTGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGATCAAGAGACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAAAATGGCCCGACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGCCGACCATTCGGCCCGTTTGCACGGGCCGAGCCCGGTGACCTCTTTTCGGTCCCTAATGCCCCGAATCGCCCCGGTTTCGCCTGGTTCGCCCCGAAACGCCACCGAATTCCTAAAAAACCCTAGGAGAACAAACAGGTATAAAACCCCCTCTTCACCACGGAAGAAGGGTTCGAAAACTCGATTCTTGACTCTCCCCTATACTATCTGAAGCTTCTCCTCAGTTTTCTGACTTAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGATTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCGGTTCCTACAAATTCACTGTTGGTGTCACGTGAAGGTCGGGTGAGTCTTCTGTCCGGATTTTGGCATCAACAAATACATCTTAAACAAATTCATGGGCAAAAATAGTTGTTTTCTTTCTAAAATGTATATATATATATATGTCTATCAGTACCACTAAATACTATTTACAAGGATTATCTTTAAATTATTGCTGAAACATCATGTATCAAAATATCATTTACGAAATTTAAGAAGTAAAATAAGATGGGATTTTAAAACTAATTTTGTTCAAGAGTCAACCTTGGAAATTTCGAAAAGGGAGTACTACGAACATCCTTATCTCTTCCAAATCGAAATGGTGAGGATTCTCATTGTAGTAAAGTAACTATGCATCACTCTCTTTTCTCCTTATTTGTTCTTTTTGTTAGTTTAGCTTGATGACTTTGAATTGTTTGATTCTTTTTCCTTCTCCTTAGACTTGATTTTGTGTGGTTCGTTCCAAGCATCTTTTTGTTCTACGTCCAAACGTGTAAGAATGAAAATATCTGTCGATAAATCAAAGAGTTCGATGGAGATAGTGAGGATTATCCATATAACTTAATAAGTTATCTTCTATTGATTTCAATATAAATAAAAATAGTCATAACAATATCTATAACTAAATTAGTTTGGTTGGGTTTTTGGTTTTTGAAAATTATACTTGTTTTCTCCCAATTTTCTTATCATGGTTTTCATGTTCGTTAAGGACACATTTGGAATTCCTGGCTAAATTCCAAAAAAAAAAAACAAGTTTTTGAAAACTATATATTTTTTTTTTTAAATTTGACTTGGTTTTTGAAAACCTAGAAAGGATATAGATAGGGCTATAGGTAATTTTGGACTACTATGATATACAAGGAGTTGACGAGGACAACTAACCCAGAAATAGGACCGAAAAATGGACTCCGGAGGCAAAACGGGCCAAAAGGTCAGGCCAAGGTCGGAGGGACCGGGCCTTGGCCCAACCCCTGCTCGGCCTCGGCCATGGACCGAGGCCTTCCGTCTTTGTTTGGTCTGAGGTGCCCCAATTCCGTGTGATTCAGCCCTGGATCGCCTCCGAACGCTTGAAAACCCTAGAGCATGAGCAGATATTTAAACTCTTCTTCATCGCTGAAGAAAGGATCCCGAACTCTATTCTCTACTCTCTTGCTCTCTTGCTCTCATCCTTCCGCTTTTTGACTTAAGCATCGGAGGCACCACACCGGTGTGTAAGTTTTTCTGTCTTGCAGGCCACGTCTTTCTACTCTCAAACAAATTTACCGTTGGTGGCACGTGAAAGTCAGGTGAGTTCTCCCTGTCCAGATAGCAAAACAAAAAAAACTTGTGAGTCAAGTTAGTATTTATAAGCTTAGTTTTCAAAAACCAAAAATAAAAAACGAAATGGTTATCAAACGTGACCTTAATAATTTAAATATAAATTTTAAATATTTTTGTATCTACACAAATATTTGTCAATGTATGGATATTTTATACTAATATATCCATCTATATTTTTGTAAAATTTAAATGTCGATATTTTTTCTTTTTTATAACAATTGAAATGTGGATATTGATTTTTTTTTTTTTTTTTTGAGAAGGTGGATATTGATATCTTACATGCCGTAGTGAGATCTATATATTATATTTGTAATTATGCTAAACATTATTTGGAAAAGAGCAGAAGGCAAAGATCGAAAATGTAATTTTCTCTCATTTTAAAATTAAATACTAACAGAAAAACACATCAATCCAGAGATATTCAAAAATATGATCCCGAAAATCTGGAAGAACATAGGGAAAGTGAGTATTAAAAAAGTGGGAGAGAATATGTTTGAATGTCAGTTTATAAATACGAGAGAAAAGATTAGAATCAGGGAAGGGGGCCCCTGGATATATGATGGAGCTCTGTTGCTATTTGAAGAGATAAAAGGTGGGGAAAGATACTCCAGATTAAAGTTCCTGTATGCTTCATTCTGGGTGCAGTTTCTGGACCTTCCAAGAGTTTGCCTTAACAGAAAATGGGCAGAAGTGTTGGGCAATGCAATAGGAAAGTTTGAACGAGTGGACTTGGATGAGATAGAAAGGGGCGGCGACAACTCTCTGAGAATTAGAGTTAAAATAGAAGTTCAAAAACCGCTGAAAAGAGGTACCATGATAAGAATAGGATCCAAGGAGATGAGGAGTGGATCTCTTTAA

mRNA sequence

ATGCCAAGGCCGAGGCCGACCATCCCCCTTCGAAAAGGCCAGGTGATTTTGGACCACACTGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGATCAAGAGACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAAAATGGCCCGACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGCCGACCATTCGGCCCGTTTGCACGGGCCGAGCCCGGTGACCTCTTTTCGGTCCCTAATGCCCCGAATCGCCCCGGTTTCGCCTGGTTCGCCCCGAAACGCCACCGAATTCCTAAAAAACCCTAGGAGAACAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGATTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCGGTTCCTACAAATTCACTGTTGGTGTCACGTGAAGGTCGGGAGTTGACGAGGACAACTAACCCAGAAATAGGACCGAAAAATGGACTCCGGAGGCAAAACGGGCCAAAAGGTCAGGCCAAGGTCGGAGGGACCGGGCCTTGGCCCAACCCCTGCTCGGCCTCGGCCATGGACCGAGGCCTTCCGTCTTTGTTTGGTCTGAGAAAGGATCCCGAACTCTATTCTCTACTCTCTTGCTCTCTTGCTCTCATCCTTCCGCTTTTTGACTTAAGCATCGGAGGCACCACACCGTTTCTGGACCTTCCAAGAGTTTGCCTTAACAGAAAATGGGCAGAAGTGTTGGGCAATGCAATAGGAAAGTTTGAACGAGTGGACTTGGATGAGATAGAAAGGGGCGGCGACAACTCTCTGAGAATTAGAGTTAAAATAGAAGTTCAAAAACCGCTGAAAAGAGGTACCATGATAAGAATAGGATCCAAGGAGATGAGGAGTGGATCTCTTTAA

Coding sequence (CDS)

ATGCCAAGGCCGAGGCCGACCATCCCCCTTCGAAAAGGCCAGGTGATTTTGGACCACACTGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGATCAAGAGACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAAAATGGCCCGACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGCCGACCATTCGGCCCGTTTGCACGGGCCGAGCCCGGTGACCTCTTTTCGGTCCCTAATGCCCCGAATCGCCCCGGTTTCGCCTGGTTCGCCCCGAAACGCCACCGAATTCCTAAAAAACCCTAGGAGAACAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGATTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCGGTTCCTACAAATTCACTGTTGGTGTCACGTGAAGGTCGGGAGTTGACGAGGACAACTAACCCAGAAATAGGACCGAAAAATGGACTCCGGAGGCAAAACGGGCCAAAAGGTCAGGCCAAGGTCGGAGGGACCGGGCCTTGGCCCAACCCCTGCTCGGCCTCGGCCATGGACCGAGGCCTTCCGTCTTTGTTTGGTCTGAGAAAGGATCCCGAACTCTATTCTCTACTCTCTTGCTCTCTTGCTCTCATCCTTCCGCTTTTTGACTTAAGCATCGGAGGCACCACACCGTTTCTGGACCTTCCAAGAGTTTGCCTTAACAGAAAATGGGCAGAAGTGTTGGGCAATGCAATAGGAAAGTTTGAACGAGTGGACTTGGATGAGATAGAAAGGGGCGGCGACAACTCTCTGAGAATTAGAGTTAAAATAGAAGTTCAAAAACCGCTGAAAAGAGGTACCATGATAAGAATAGGATCCAAGGAGATGAGGAGTGGATCTCTTTAA

Protein sequence

MPRPRPTIPLRKGQVILDHTDGQGADEDNRAEVGSRDRPRGRPDQRVGPKWPDPYGRPRPFAEADHSARLHGPSPVTSFRSLMPRIAPVSPGSPRNATEFLKNPRRTNRHRRRCGLHHAGVQRFLLVLQVTSSPVPTNSLLVSREGRELTRTTNPEIGPKNGLRRQNGPKGQAKVGGTGPWPNPCSASAMDRGLPSLFGLRKDPELYSLLSCSLALILPLFDLSIGGTTPFLDLPRVCLNRKWAEVLGNAIGKFERVDLDEIERGGDNSLRIRVKIEVQKPLKRGTMIRIGSKEMRSGSL

Homology

[Close]

BLAST of Lag0012286 vs. NCBI nr
Match: XP_042962426.1 (uncharacterized protein LOC122296689 [Carya illinoinensis])

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-04
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 233 DLPRVCLNRKWAEVLGNAIGKFERVDLDEIERGGDNSLRIRVKIEVQKPLKRGTMIRIGS 292
           +LP V +NR+  E +G AIGK   V++D+   G  + LRI+V ++V KPL  G M+ +G 
Sbjct: 132 NLPFVGMNRQLGERIGEAIGKVHTVEVDDQGHGWGSFLRIKVDVDVTKPLVHGRMVNLGG 191

Query: 293 KEMRS 298
           K+ RS
Sbjct: 192 KQSRS 196

[Close]

BLAST of Lag0012286 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-04
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 231 FLDLPRVCLNRKWAEVLGNAIGKFERVDLDEIERGGDNSLRIRVKIEVQKPLKRGTMIRI 290
           F DLP  C+ R  A  LGNA+G FE  D D++     ++LR+RV +++ KPL+RG  + +
Sbjct: 133 FFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNL 192

[Close]

BLAST of Lag0012286 vs. NCBI nr
Match: XP_018809039.1 (uncharacterized protein LOC108982191 [Juglans regia] >KAF5462220.1 hypothetical protein F2P56_018246 [Juglans regia])

HSP 1 Score: 55.8 bits (133), Expect = 7.2e-04
Identity = 23/64 (35.94%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 233 DLPRVCLNRKWAEVLGNAIGKFERVDLDEIERGGDNSLRIRVKIEVQKPLKRGTMIRIGS 292
           +LP   + +KW E +G ++G+   VD+DE + G    LR+R+K+++ KP+ RG +I +  
Sbjct: 131 NLPLGLMTKKWGECIGQSVGQVLDVDVDEDDIGWGKYLRVRIKLDLHKPITRGRIIMVHG 190

Query: 293 KEMR 297
           K++R
Sbjct: 191 KKIR 194

[Close]

BLAST of Lag0012286 vs. NCBI nr
Match: XP_042973202.1 (uncharacterized protein LOC122305006 [Carya illinoinensis])

HSP 1 Score: 55.5 bits (132), Expect = 9.4e-04
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 233 DLPRVCLNRKWAEVLGNAIGKFERVDLDEIERGGDNSLRIRVKIEVQKPLKRGTMIRIGS 292
           +LP   +NR+  E +G AIGK   V++D+   G  + LRI+V ++V KPL RG M+ +G 
Sbjct: 74  NLPFAGMNRQLGERIGEAIGKVHTVEVDDQGHGWGSYLRIKVDVDVNKPLVRGRMVNLGG 133

Query: 293 KE 295
           K+
Sbjct: 134 KQ 135

[Close]

BLAST of Lag0012286 vs. NCBI nr
Match: XP_042983219.1 (uncharacterized protein LOC122312628 [Carya illinoinensis])

HSP 1 Score: 55.5 bits (132), Expect = 9.4e-04
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 233 DLPRVCLNRKWAEVLGNAIGKFERVDLDEIERGGDNSLRIRVKIEVQKPLKRGTMIRIGS 292
           +LP   +NR+  E +G AIGK   V++D+   G  + LRI+V ++V KPL RG M+ +G 
Sbjct: 134 NLPFAGMNRQLGERIGEAIGKVHTVEVDDQGHGWGSYLRIKVDVDVNKPLVRGRMVNLGG 193

Query: 293 KE 295
           K+
Sbjct: 194 KQ 195

[Close]

BLAST of Lag0012286 vs. ExPASy TrEMBL
Match: A0A2N9IPQ7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54724 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.1e-05
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 233 DLPRVCLNRKWAEVLGNAIGKFERVDLDEIERGGDNSLRIRVKIEVQKPLKRGTMIRIGS 292
           DLP + +NR+  E +G  IG+   VD+DE   G   SLR+RVKI+V++PL RG  +++G 
Sbjct: 64  DLPLIYMNREVGEKVGKEIGEVILVDMDEEGVGWGKSLRVRVKIDVKEPLLRGKKVKLGG 123

Query: 293 KEM 296
           + M
Sbjct: 124 QSM 126

[Close]

BLAST of Lag0012286 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 231 FLDLPRVCLNRKWAEVLGNAIGKFERVDLDEIERGGDNSLRIRVKIEVQKPLKRGTMIRI 290
           F DLP  C+ R  A  LGNA+G FE  D D++     ++LR+RV +++ KPL+RG  + +
Sbjct: 133 FFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNL 192

[Close]

BLAST of Lag0012286 vs. ExPASy TrEMBL
Match: A0A2I4DPG3 (uncharacterized protein LOC108982191 OS=Juglans regia OX=51240 GN=LOC108982191 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-04
Identity = 23/64 (35.94%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 233 DLPRVCLNRKWAEVLGNAIGKFERVDLDEIERGGDNSLRIRVKIEVQKPLKRGTMIRIGS 292
           +LP   + +KW E +G ++G+   VD+DE + G    LR+R+K+++ KP+ RG +I +  
Sbjct: 131 NLPLGLMTKKWGECIGQSVGQVLDVDVDEDDIGWGKYLRVRIKLDLHKPITRGRIIMVHG 190

Query: 293 KEMR 297
           K++R
Sbjct: 191 KKIR 194

The following BLAST results are available for this feature:

BLAST of Lag0012286 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042962426.1	1.9e-04	43.08	uncharacterized protein LOC122296689 [Carya illinoinensis]	[more]
XP_022158377.1	2.5e-04	41.67	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_018809039.1	7.2e-04	35.94	uncharacterized protein LOC108982191 [Juglans regia] >KAF5462220.1 hypothetical ...	[more]
XP_042973202.1	9.4e-04	41.94	uncharacterized protein LOC122305006 [Carya illinoinensis]	[more]
XP_042983219.1	9.4e-04	41.94	uncharacterized protein LOC122312628 [Carya illinoinensis]	[more]

BLAST of Lag0012286 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0012286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IPQ7	7.1e-05	44.44	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54724 PE=4 SV=1	[more]
A0A6J1DX30	1.2e-04	41.67	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A2I4DPG3	3.5e-04	35.94	uncharacterized protein LOC108982191 OS=Juglans regia OX=51240 GN=LOC108982191 P...	[more]

BLAST of Lag0012286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012286.1	Lag0012286.1	mRNA