Lag0012187 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012187
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glutamate receptor
Location	chr1: 38481890 .. 38487216 (-)
RNA-Seq Expression	Lag0012187
Synteny	Lag0012187

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAAGCTCGAGGAGGAGGAAGGAAATGGAGAGAAAGAAGAGGAAAGGAGGAAGAAGGAAAAAAAAAAGGTTGTCGGTTGCCGGCCGCCGACAACAGTGGTTGTTGATGGCTGTGATGGCGCTTGGAGAAGAAGGAAAAGGTGAAGAAGAAGGAGGAGAGAGGAAAGGGAAAATAAATAATAAAATTAATATAAAATAATAATATTTTTATATTTTAATATATTTATATTTTAAAAATCACAAAATAAATATTTTTAATAAAAAATTAGTGCCATGTCAACATTCCGTTAATTATTAACGGAAAATTGGATGGATGGACCAAATTGCAACTAAAATCAAATCTCAGGGACTAAATTGTTGAGTTTGAAACCTCAGGGACCAAAATGAAACCTAACTCAAACCTTAGGGACGAAAAATGTATTTTTCCCTAAATTTTAAGTATGGCAGATCTTGAAAATTTTAGAAACAAAGTAATTGTGAAGAAGAAAAATCACGGTGCATATATATTGTATAATAATTTAAAAGAATAAACTTACCTTTCACCAATGTGAAATGCGCGACTAAAAACACTATTTGAAAAAATTGGAATGGTTAGTGCTTTATTGCATATTTAAAGAAACATAAAAAAAAAAAAAAAAACAAAATCTTGAGAGAGAAAATCATAAAAAATAAGATGAATAGTTGTTGCTTGAAAAGAGTGGAAGAGAGCCTTTTATAGTGGTAGGAAAGGAAAGAGTTATAAAACCTTTTGTAATTGAATATAGTTAAATGATAATAAATAAAAAAAAGAAAAGAAAGTTAACGAACTTCTTATTAAAACGAAAAGCCAGCGTAAAACAAAAAAACACATACATGCATAAAAAACAAAAAGGCACATACATGCATTTTTCTTAAAATTATTATCTATTAATTAATATTAAATTATTGTAATTCTAATTTATAATGACACAATTTATTAAGAGCCACATATTATACTAAATTAAGGGTATATTAGGTATTTAGTGAAAACTAAAGGATAATATTGTCCAAAATAAATTTCTTCCACATTCGTACTTTTATATATACTAGTTTTTTCCTCACATGCTTTGCACGTGACTTATCCTTTTTAAAACTAAATTTAATATTATAAATTTGCAATACTCAACATGTATTATACAATTTTGTAATTAAAAATTTGATGTCAATTAACAATGTATACTATATTTTTTAGAGAAAAATATCAAGAGATTTTGAATAATTACTATTCAATTACTCAAGTAAACATGTCTATGCAAATGAGAATATGAGAATGTTAAAATATAAAAAAGAAAAAAATTGATTTTTTTAAAAAAAAGAAAATTGACAAAATTTAAATCTTTCTACGCAAAACGTGAAAAAAAATGTAAATTGACAAAATAAAATTTTAAATGAAGTTTTTTTTTAGAAAAAAGAAAATTGACAAAATTGAAATCTTTCTTAATAGACACAAAACTTGAACAAAAAAAAAAAAAATTAAATTGACAAAATCAAAATTTAATGAAACTTGATTTTTTTTTTTTTTAAAAAAAGAAAATTGACAAAATCTAAATCTTTCCCCGTAGACACAAAACGTGAAACGAAAAAAAAATAATAATTGACTAAATTAAATTTTAATGACGATTTTTTTTTTTAAAAACAAAATTACAAAATTGAAATCTTTCTAGTAGAAACAAAAGGTGGGAAAAAATTTAATTGACAAAATTAAATTCTAATGAAACTTGATTTAAAAAAAAACAAAAGAAAATTGAAGAAAATCACAGATCTATAAGCTTTAATATTTTGGGTTTAATGGTAATTTAATATGATATCAAATTAGGTTATCTCATATTCTAACTCTTTTGATATGATACAATATATATAAAATTATAAATACATGTAGAAGGAATTTTAAAATTTTACAAAAATAACATAATCAAAACTCAATTTAAATTTCAAATATAATATTGATTACAGTAAGAAAAATTAAATTTATGCTATATTCATAAAAACTTAAACTTATGCTATATTCAATTTAAATTTCAAACTAAAAAAAAAAAAATACAAACGAACAATTTGAAGAAATTAGAAAATACCTGAAATATAAACGAACAATTTATTTCTTCTCCCTTTTTCTCTCTCTTTATTTTCTCTCTCAAGATAGCACAACATGAGAGCGAGAGGTTGGAGTAGCGAGAGAGAGCAAGAAGCTAGAGGAAGAGGTTGAAGAGAGAGTGAGAAATTGGAGATAAAGCTAGAATCTGGAGCGAGAGCCTGTGTATTCCGTTGAGCAATCAATAAAATTGGAGGTGTTCGTTTTTGGAAAAAAAAAAAAAGAAGAAAGAAACCATTTGGGAGAGAAACACTTGAAAGTTTTTTTTTTATTTTTAATAATTAAAAGTTTTTAAGTATATATAACAACTTGCGTATAAAAACACTCACGAGGAAATGTCACCAAACATATGAGTGTTTAAATTCTAAACAATTTTTTATACAAAATGCTTTTTAAAAAAATGCATTCTTAAAAAATATTTAAACTAAAAGGTATTCTAAACGGTCTTGAATTGAAGGAGGCGGCTGAAGAAGAAGACATGAGGCAATTTAAAATTGACATTCAAAATTTTCAAGTTTTAGGCCCCGTTTGATAACCCATTTGGTTTTTGAAAATTAAGCATGTTTTCTACCAAATTTCTTACCATTGTTTTCATCTTTGTCAAATACACATTTGAATTTCTAGTCAAATTCCAAAAACAAAAACAAGTTTTTGGAAACTATTTTTTTTAGTTTTCAAAACTTGAGTTGACATGGGAAAAAGGTAGAGAACAAAACAAAGAAACTTATTAGTGAAAATAGTGTTTGTAGGCTAAATTTTAAAAAACAAAAAACCAAAATCAAAATGGGTTATTCCAATAGGGCCTTAGATTTTCAACTTTCATGATTAAGCAGAGTTGAAGTAGGAAAATTGTTTTTAACCTGTGCTTGAATTCGGAGGAATCTTGAGGTTGAATATGTTTTGAATTTGAAATAACGACCGACGCGGAAAAGAATAAAGAAAAAAAATAAAAAGAGAGCTGAGAATTTTCATATGTTTTAAGCAGCTTAGAGTTATGAAAAATAAATGGAGTTTTTACCATTAATTTCCGACGTTACAATATGCCTGCAACAAAGATAATTAAGCACTGGTACGGTGCTAAGCCACATACACTCTGACGCTCAAGTTAGAATAAGGTTTTGAAAGTAACAAAGAGTGCTTAAACCACAGTAGATAAGTAAGTATTTTGGGTGTACACTCAATATTCCTTTCTATGTATTCTATTTATAATACGAATGTAGGATAGTAAAACGACTAACATTAATCTCTTCAAGAATCTTGTCTTGATTCTCGAATCTCTTTAATTGACGGTTACAAATCTGTAACTGTCGATGAACTTGGCCAATTACCATAACTGTCGTTGAACTTGAGCTTGACCAATAGTTTGTCCGTAGGACTTTTCGACATCTAAAACCTTGAACATTTGATCGGTAGTCAACAGTTTCAGTTCAATCTCCATTGCCAACGGTTCTTAAGGATATGTCCAACCCTTCGAGGGATAAACGTTCAAACCACGACCGAACCCTTGTGGCCTTAGGGGTCGACCATGGTGCTCGGGGTCAGCCTCATGGCTTTTGGGCCTCTTGGCTGACTCTTTTGCGGGTCGGCCTCTTGGCCTCGGTTGTTTTCCTTGGAGTCTTAGATCATTAATTGGTTCTTTGAGTTTCTTTGACTTCTTAATTCATTCTCGACCTTAGAATCCTTGATGAGCTTAATGTTAGGCCCAACCGAAATTCTACCCGTAACAGAAGTCGTGTTTGGTACATAAAAACTCTTCAAACTACTCCCTTTTTGGAAGGCAGAAGGAAGGTAAGAGGATTTCATAGGTGAGTTTTATATTGATCCATTTATCTACATTCTCGCAGGACCATTTAGAAGTACTAGTTAAAAGACATGTGCAATGCACATGAAAGTTCACTGTTTTAATTGAAAGTAAAAAATAAAAAGTGTAAATATTTAGAATAAATAGGAAATGTGTTGCATGTGATTTAAAATATTTGGAACAAGATTTTATAAAAGTGAAATTTAACATTTTTAATTAATATATATATATATTTTTGAATTTAAATAGAAAATATTTGGACATGAAATTTATAAGTAATGAAAGAGATAAATATGATAAAGAACACAAGAATGATTAAATTAAAATACATATAATGTAATAGAAATTGACAAAGAAATATCATAATTATTAAGGAGAATAGTCAAAGTGCCATGTCAAGATCATTGGCCAAGTCAGCTAGTACACGTCACAATGAAATCCAGAAGCTTCCACCACCAAATTCTGTTACAAAATAATTATGTACAATTGTCCTTTTGCTGATTCTTTGGACATCTGTCCCTTTACTTCCAAATTTGTTATTTCCTCGTTATTTGCCCTAAGGGCCTTATGTATAAATATAGCAGTCTTGCTACAGTATTCAATGAGAAGGCAGAATATAGAAAATTCCCCTCATATTACAGATTTTAACTTGGTATCAGAGCGCAGCAAATGACCAACATCTCTTATACAATTCCTTCAATGGCTGTTGGGACTACAACGTTCAGTAGCCCACCTCTCAATCAATTGTTGAACCAAATCACCACAATCAAGCTGGATCGTGGAAATTTCCTTCTATGGAAGAACCTGACCATGCCAATACTTCATAGCTACAAGCTTGAGGGTCACCTACTGGGCACAAAACCGTGTCCTCCGACGTATATTCGTCAAGAAGGTGATTAAGTGAATGCAACTGCTACCACACAAGGGGAAGTAGGAGCCTCAAGCTCACAAACTGATGTAAGCGGTACCGTCTCAACTTCAGAAGCAAGTAAGGTCATAAACCCTCAATATGAAGCTTGGGTAGCAGTTGATCAGCTCTTATTGGGCTAGCTCTACAATTCTATGACTCCTGAAGTAGCAACTCAAGTCATGGGAGTTGAAAACGCTAACGATCTATGGCTGGCTATTGAAGAACTGTTCGGAGTACAGTCAAGGGTCGAAGAGGATTTTCTTCGCCAAACATTCCAACAAACGAGAAAAGGTAATATGAAAATGACTGATTATCTTCGTTTGATGAAAAATCACGCTGACAACTTGGGCTTAGCTGGAAGTCCCATTTCAAATAGAAATCTCGTTTCTCAGGTTCTGTTAGGTCTTGATGAAGAATATAATGCCATTGTTGCAATGATACAAGGGAGATCAAGTGTGTTGTGGGCTGAACTACAAGCAGAGCTTCTTGTGTTTGAAAAGTGA

mRNA sequence

ATGGAGAAGAAGCTCGAGGAGGAGGAAGGAAATGGAGAGAAAGAAGAGGAAAGGAGGAAGAAGGAAAAAAAAAAGGTTGTCGGTTGCCGGCCGCCGACAACAGTGGTTGTTGATGGCTGTGATGGCGCTTGGAGAAGAAGGAAAAGAGCGCAGCAAATGACCAACATCTCTTATACAATTCCTTCAATGGCTGTTGGGACTACAACGTTCAGTAGCCCACCTCTCAATCAATTGTTGAACCAAATCACCACAATCAAGCTGGATCGTGGAAATTTCCTTCTATGGAAGAACCTGACCATGCCAATACTTCATAGCTACAAGCTTGAGGGTCACCTACTGGGCACAAAACCGTGTCCTCCGACGTATATTCGTCAAGAAGTAGCAACTCAAGTCATGGGAGTTGAAAACGCTAACGATCTATGGCTGGCTATTGAAGAACTGTTCGGAGTACAGTCAAGGGTCGAAGAGGATTTTCTTCGCCAAACATTCCAACAAACGAGAAAAGGTAATATGAAAATGACTGATTATCTTCGTTTGATGAAAAATCACGCTGACAACTTGGGCTTAGCTGGAAGTCCCATTTCAAATAGAAATCTCGTTTCTCAGGTTCTGTTAGGTCTTGATGAAGAATATAATGCCATTGTTGCAATGATACAAGGGAGATCAAGTGTGTTGTGGGCTGAACTACAAGCAGAGCTTCTTGTGTTTGAAAAGTGA

Coding sequence (CDS)

ATGGAGAAGAAGCTCGAGGAGGAGGAAGGAAATGGAGAGAAAGAAGAGGAAAGGAGGAAGAAGGAAAAAAAAAAGGTTGTCGGTTGCCGGCCGCCGACAACAGTGGTTGTTGATGGCTGTGATGGCGCTTGGAGAAGAAGGAAAAGAGCGCAGCAAATGACCAACATCTCTTATACAATTCCTTCAATGGCTGTTGGGACTACAACGTTCAGTAGCCCACCTCTCAATCAATTGTTGAACCAAATCACCACAATCAAGCTGGATCGTGGAAATTTCCTTCTATGGAAGAACCTGACCATGCCAATACTTCATAGCTACAAGCTTGAGGGTCACCTACTGGGCACAAAACCGTGTCCTCCGACGTATATTCGTCAAGAAGTAGCAACTCAAGTCATGGGAGTTGAAAACGCTAACGATCTATGGCTGGCTATTGAAGAACTGTTCGGAGTACAGTCAAGGGTCGAAGAGGATTTTCTTCGCCAAACATTCCAACAAACGAGAAAAGGTAATATGAAAATGACTGATTATCTTCGTTTGATGAAAAATCACGCTGACAACTTGGGCTTAGCTGGAAGTCCCATTTCAAATAGAAATCTCGTTTCTCAGGTTCTGTTAGGTCTTGATGAAGAATATAATGCCATTGTTGCAATGATACAAGGGAGATCAAGTGTGTTGTGGGCTGAACTACAAGCAGAGCTTCTTGTGTTTGAAAAGTGA

Protein sequence

MEKKLEEEEGNGEKEEERRKKEKKKVVGCRPPTTVVVDGCDGAWRRRKRAQQMTNISYTIPSMAVGTTTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTMPILHSYKLEGHLLGTKPCPPTYIRQEVATQVMGVENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLMKNHADNLGLAGSPISNRNLVSQVLLGLDEEYNAIVAMIQGRSSVLWAELQAELLVFEK

Homology

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BLAST of Lag0012187 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-51
Identity = 111/221 (50.23%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 61  PSMAVGTTTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTMPILHSYKLEGHLLGTKPCPP 120
           P   V    F+SPPLNQLLNQIT+IK+DRGNFLLW+NL +PIL SYKL  +L G KPCPP
Sbjct: 13  PPAVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPP 72

Query: 121 TYI-------------------------------------------RQEVATQVMGVENA 180
           T++                                             +VA QVMG   +
Sbjct: 73  THLVPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTS 132

Query: 181 NDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLMKNHADNLGLAGSPISNR 239
            +LW A++ELFGVQSR E D+L+Q FQQT KG+++M +YL+LMK+HADNL LAGS +S R
Sbjct: 133 RELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVR 192

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BLAST of Lag0012187 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-46
Identity = 103/238 (43.28%), Postives = 133/238 (55.88%), Query Frame = 0


Query: 53  MTNISYTIPSMAVGTTTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTMPILHSYKLEGHL 112
           M N   T    ++ +  FS+PPLNQ+LNQ+ T+KLDR N+LLWK L +PIL  YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHL 60

Query: 113 LGTKPCPPTYI------------------------------------------------- 172
            G  PCP  ++                                                 
Sbjct: 61  TGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLY 120

Query: 173 ---RQEVATQVMGVENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLM 232
                +VA Q+MG  N  DLW A ++ FGVQSR EEDFLRQ  Q TRKGN KM +YL +M
Sbjct: 121 NSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVM 180

Query: 233 KNHADNLGLAGSPISNRNLVSQVLLGLDEEYNAIVAMIQGRSSVLWAELQAELLVFEK 239
           K + DNLG  GSP+  R L+SQVLLGLDE YN ++ +IQG+  + W ++Q++LL+FEK
Sbjct: 181 KTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 238

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BLAST of Lag0012187 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 185.3 bits (469), Expect = 6.3e-43
Identity = 104/224 (46.43%), Postives = 121/224 (54.02%), Query Frame = 0


Query: 83  TTIKLDRGNFLLWKNLTMPILHSYKLEGHLLGTKPCPP---------------------- 142
           TTIKLD+ N+LLW+NL +PIL SY+LEGHL G  PCPP                      
Sbjct: 43  TTIKLDQENYLLWRNLALPILRSYRLEGHLTGEDPCPPRFSVATDQSTATVPPGDEAGLG 102

Query: 143 ----------------------------------------------TYIRQEVATQVMGV 202
                                                          ++  EVA QVMG 
Sbjct: 103 GQYSGIASLTPQQGITTASNSSPVLQVNPFYESRTVVDQLLLGWLYNFMTAEVAMQVMGY 162

Query: 203 ENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLMKNHADNLGLAGSPI 239
           EN   LW AI+ELFG+QSR  ED+LRQ FQQT KG MKM +YLR+MK H+DNLGL GSP+
Sbjct: 163 ENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKTHSDNLGLTGSPV 222

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BLAST of Lag0012187 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-36
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 126 EVATQVMGVENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLMKNHAD 185
           EVATQVMG ENA DLW AI+ELFGVQS+ EED+LRQ FQQTRKG++KMTD+LR+MK+HAD
Sbjct: 56  EVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHAD 115

Query: 186 NLGLAGSPISNRNLVSQVLLGLDEEYNAIVAMIQGRSSVLWAELQAE 233
           NLG AGSP+  R+L+SQVLLGLDEEYN +VA IQG+  + W E+QAE
Sbjct: 116 NLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAE 162

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BLAST of Lag0012187 vs. NCBI nr
Match: TYJ96311.1 (uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 3.4e-33
Identity = 84/202 (41.58%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 53  MTNISYTIPSMAVGTTTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTMPILHSYKLEGHL 112
           M N   T    ++ +  FS+PPLNQ+LNQ+ T+KLDR N+LLWK L +PIL  YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHL 60

Query: 113 LGTKPCPPTYI------------------------------------------------- 172
            G  PCP  ++                                                 
Sbjct: 61  TGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLY 120

Query: 173 ---RQEVATQVMGVENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLM 203
                +VA Q+MG  N  DLW A ++ FGVQSR EEDFLRQ  Q TRKGN KM +YL +M
Sbjct: 121 NSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVM 180

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BLAST of Lag0012187 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-51
Identity = 111/221 (50.23%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 61  PSMAVGTTTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTMPILHSYKLEGHLLGTKPCPP 120
           P   V    F+SPPLNQLLNQIT+IK+DRGNFLLW+NL +PIL SYKL  +L G KPCPP
Sbjct: 13  PPAVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPP 72

Query: 121 TYI-------------------------------------------RQEVATQVMGVENA 180
           T++                                             +VA QVMG   +
Sbjct: 73  THLVPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTS 132

Query: 181 NDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLMKNHADNLGLAGSPISNR 239
            +LW A++ELFGVQSR E D+L+Q FQQT KG+++M +YL+LMK+HADNL LAGS +S R
Sbjct: 133 RELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVR 192

[Close]

BLAST of Lag0012187 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 103/238 (43.28%), Postives = 133/238 (55.88%), Query Frame = 0


Query: 53  MTNISYTIPSMAVGTTTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTMPILHSYKLEGHL 112
           M N   T    ++ +  FS+PPLNQ+LNQ+ T+KLDR N+LLWK L +PIL  YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHL 60

Query: 113 LGTKPCPPTYI------------------------------------------------- 172
            G  PCP  ++                                                 
Sbjct: 61  TGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLY 120

Query: 173 ---RQEVATQVMGVENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLM 232
                +VA Q+MG  N  DLW A ++ FGVQSR EEDFLRQ  Q TRKGN KM +YL +M
Sbjct: 121 NSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVM 180

Query: 233 KNHADNLGLAGSPISNRNLVSQVLLGLDEEYNAIVAMIQGRSSVLWAELQAELLVFEK 239
           K + DNLG  GSP+  R L+SQVLLGLDE YN ++ +IQG+  + W ++Q++LL+FEK
Sbjct: 181 KTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 238

[Close]

BLAST of Lag0012187 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.2e-37
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 0


Query: 126 EVATQVMGVENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLMKNHAD 185
           EVATQVMG ENA DLW AI+ELFGVQS+ EED+LRQ FQQTRKG++KMTD+LR+MK+HAD
Sbjct: 56  EVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHAD 115

Query: 186 NLGLAGSPISNRNLVSQVLLGLDEEYNAIVAMIQGRSSVLWAELQAE 233
           NLG AGSP+  R+L+SQVLLGLDEEYN +VA IQG+  + W E+QAE
Sbjct: 116 NLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAE 162

[Close]

BLAST of Lag0012187 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 84/202 (41.58%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 53  MTNISYTIPSMAVGTTTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTMPILHSYKLEGHL 112
           M N   T    ++ +  FS+PPLNQ+LNQ+ T+KLDR N+LLWK L +PIL  YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHL 60

Query: 113 LGTKPCPPTYI------------------------------------------------- 172
            G  PCP  ++                                                 
Sbjct: 61  TGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLY 120

Query: 173 ---RQEVATQVMGVENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLM 203
                +VA Q+MG  N  DLW A ++ FGVQSR EEDFLRQ  Q TRKGN KM +YL +M
Sbjct: 121 NSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVM 180

[Close]

BLAST of Lag0012187 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 86/202 (42.57%), Postives = 107/202 (52.97%), Query Frame = 0


Query: 53  MTNISYTIPSMAVGTTTFSSPPLNQLLNQITTIKLDRGNFLLWKNLTMPILHSYKLEGHL 112
           MTN +  I   A  TT+F++P LNQ+LNQ+TTIKLDRGN+LLWK L +PIL SYKL  HL
Sbjct: 1   MTNAA-PISVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHL 60

Query: 113 LGTKPCPPTYI------------------------------------------------- 172
            G  PC P  I                                                 
Sbjct: 61  FGESPCLPKIIMLTTQPNESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWL 120

Query: 173 ----RQEVATQVMGVENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRL 202
                 EV  Q+MG  NA DLW A ++LFG+QSR +EDFL QTFQ T+KGN+ M +YLR 
Sbjct: 121 YNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRT 180

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BLAST of Lag0012187 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-07
Identity = 43/158 (27.22%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 84  TIKLDRGNFLLWKNLTMPILHSYKLEGHLLGTK-PCPPTYIRQE-----VATQVMGVE-- 143
           T+ L++ N+ +W+ L   +  S+ + GH+ G+  P P T  R +     V   + G    
Sbjct: 25  TLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEKRWKERDGLVKMWIYGTITD 84

Query: 144 -----------NANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLMKNHA 203
                       A DLWL++E LF               + T   ++ + +Y + +K+ +
Sbjct: 85  SLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKSLS 144

Query: 204 DNLGLAGSPISNRNLVSQVLLGLDEEYNAIVAMIQGRS 223
           D L    SPIS+R LV  +L GL E+Y+ I+ +I+ +S
Sbjct: 145 DLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKS 182

[Close]

BLAST of Lag0012187 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-06
Identity = 37/156 (23.72%), Postives = 67/156 (42.95%), Query Frame = 0


Query: 85  IKLDRGNFLLWKNLTMPILHSYKLEGHLLGT-------------------KPCPPTYIRQ 144
           + ++  N+  W+ L +    S+ + GH+ GT                        T   +
Sbjct: 24  LDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPTNANDVNWQKRDGIVKLSLYGTLTPK 83

Query: 145 EVATQVMGVENANDLWLAIEELFGVQSRVEEDFLRQTFQQTRKGNMKMTDYLRLMKNHAD 204
           +     +    + D+WL I+  F          L    +    G+M++ DY R MK  AD
Sbjct: 84  QFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLAD 143

Query: 205 NLGLAGSPISNRNLVSQVLLGLDEEYNAIVAMIQGR 222
           +L     P+++RNLV  VL GL+ +++ I+ +I+ R
Sbjct: 144 SLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHR 179

The following BLAST results are available for this feature:

BLAST of Lag0012187 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	2.8e-51	50.23	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
KAA0026100.1	2.7e-46	43.28	uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]	[more]
XP_038902487.1	6.3e-43	46.43	uncharacterized protein LOC120089143 [Benincasa hispida]	[more]
XP_022148963.1	1.5e-36	72.90	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
TYJ96311.1	3.4e-33	41.58	uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0012187 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0012187 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	1.4e-51	50.23	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7SIT7	1.3e-46	43.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1D5J0	7.2e-37	72.90	uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5D3BCH9	1.7e-33	41.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VPY0	1.2e-31	42.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lag0012187 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	2.0e-07	27.22	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G34070.1	2.2e-06	23.72	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 123..234 e-value: 4.3E-10 score: 39.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 76..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012187.1	Lag0012187.1	mRNA