Lag0011926 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011926
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 35020997 .. 35023754 (+)
RNA-Seq ExpressionLag0011926
SyntenyLag0011926
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGAATTGAGCTGAAGATGAAGAAACCAACTGTAGGTCTCTCTGAGGCATTTCAACAAACACTTTAAGAGCATAAACTAAAAATCCACATTTTCCATCTTGGTTATTACCCAAAAAAAGACACATAAAAGTGAATCTGAATCAGGAAAGATATCAGTATATGTATAACATACAACAAAAATAAAAAGAACACTCCAAAATCATACTCATTGTTCAATACGAACTTCCAAACCACTGTCCATCTCAAGCCATCATGGTATTTTGCAGTACAGAACAAACGTATGCGTTCAAGGAGTAAAACAGCCGGAAGAATTCAGAAGCTAAGAAAGAACCAGAAGCTAAGAAAGAACCCAGTAAAGAAAACCAAAAGGAAGAGGAGAGGCCAAAACAAAAAAAAAAAAAACAAAAATGTTGGAGCCCGTCAGACCGCCATGCGACCATCCCAGCAGGACAAAGCCAGCCGAGAACGATCCTCTACAGCCGCAGAACCCAGAGGTTCGTTGGCAGTTAATCACGCTCTAGTCACACGGCAGTGGTTCATCCACCAGACTAAAGTTCTTGTCTCCTTAGAACTCAAGGACACAGTTGTACAACCTATAGAACAGATCCTGTTCAAGTAAGGTCGTGCCCAATTTCCTTCCTCTTATTCTTTAAATATTATTAAATTTTGATGCAAGTTTCCGATGTGGGATATGACTGACTTAAAGAAGACAGATGTCAATCCAATCAGCTAATTTAAGATTAGAAATAAAGTGGAGCGGGTAAGTCTAATTTATCTTAATTTTCAAAAAAAAGAAAAAAAGTCTAATTTATCTTTATTTTCAATTATATGCCAACAGATTTTTATTTTTTTTTATTTTAATGCACTCTATTTTGTTGAGTGGCCTATTTTTATTTCCAATAATTTGTGTTTTGATGTCAAATTAATTTACATAAATCAATCAACACAAATCTTTATTAAATTTGCATAAATTAAAAATATCTTCTATGTGACTTCATTTGAAAAAACAATTTGGTGAAATTAGAAAGTTTTAAGAAAGTTATACATTGCATTTTTATTGAAATTGGTGAATGAATTCACGTGGAGTTGAACAAAAAGTAAAAATTATCAAAGTCTAGAGTTATAAGTTCAGATTGAGAAATATCTTGATCCACCCTATCAAATTTAAAGATAAAGATTGAATTTTTCCATTACATTAATTATAGATGTTTTATTTTCATTTTACTACCAAACTAAATCCAAATATATCATGTTTTAAAAGTTCGATTTCTAAGGTCATGTTTTATAAGAAAAAATGAAAAGAAGAAAAACAAAAACACAGAATGGCCACAAGATTAAATTCGAGTGGAGTGAATTACTGGGGGGCTAATTCTACTAGACTGAACAATTAATTGTGAATTTAAGGGTAGTGTCTAATATTAGTAATATATATTTTTAAGTTGAAGGGGGCTAGAGCCCCCATGGACCCTTCGTAGGTCCGCCGCTGAATTAGATGGAGTAAAAGAGTTGAGAATTGAATTTACCTGTAGAGAAAATTTGTGATTAAAAGAGAAAAGGCGTCCTCTAGATGGAATGTGTTAGAAAGAAAAGAGGAGTCATATAATAGAGTCTAGTATATATATATATATATATATATATATATATATATATATTTTAAAGAAAAAAGATTTTTTTCTCTCGTCATAGGGTATATTTTTTTTAGTGATGGTTTCTTCAATTTAATTAAAACTCCCATTAATTTTAAATTATATTCTAAAAAGAAACAAAAAAAAGAAAGAAGTTTTTTTTTTTTTTTTTTTTTTTGTTTATTGAAAAAAAAAAGGAAGTTTAAAAATGAAAGGTAGTGTAATTAACTATAGAACAAGATAGACCCAATATGCTTGGCTTGGCTAGAGTTAGAGAGAGGTGGGAGGAGTCAACCTACCTTATAATAATGTTATAGAATGTAACCTATAAAATCTTTGCTCTTTTTAAAGTTTAACGTGACTATAAGTGTGATTCATGTATGTCGTCGTTAAGTTCAAATAGTGATTTATACCCAAGTGTCAGTCGATAGGTTAATTAATTGAATTTTTTTCTCCAAATTAATTTTTATGAAGATATTGGTCCACTCTAATGCCTATCACACATAAAACGTTTGTCAAAGCCTAAGTAAGCCAAAAAGATAGAAACACAATTTACGACTGATCGCTTAGTAATATCGACATCAAAGGGTCCAAAATATGGTGTCTCAACATTGGAAGGTGATGGGAGAGGAAGATTGTGCGTTACTGTTGAAAGTAGACAAAAAATTTCTCTAAACCAAACTCTAAATATCAATTCTGCAGATATTTCATGTTACTTCTCCTCTCTCTCTCTCTTTCATTGTTGTTCATTATTCATGGAGGGTTAGATAATGTTAATGTTCTTGCATGAATATTCTAGCTTTTACATCAACTCCCCTCGTTATCTTTGTTGCAAGACTTGGACTCAAGAAATTAGGGTCGGATCAGTGTGGCATCTTTGCCAAACACCCTTCGATGCTTAGAACCTGGAGGTCCGTTAGCAGTTAATCACGCTCTAGTCACAGGAGCGTGGTTCATCCACCAGACTATGGTTCTTGTCTCCTTAGAACTCAAGGAGACAGTTGTACAACCTATAGAACAGATCCTGTTCAAGTAAGGTCGTACCCTGTCTGCTTCATTCTTCCGTTTAAGTATTGTAATTCTAGTTTACAACTTATCGATGTGGGACATTTGGCAACTTGCGCTTAG

mRNA sequence

ATGGGTGGAATTGAGCTGAAGATGAAGAAACCAACTGTAGTACAGAACAAACGTATGCGTTCAAGGAGTAAAACAGCCGGAAGAATTCAGAAGCTAAGAAAGAACCAGAAGCTAAGAAAGAACCCAGTAAAGAAAACCAAAAGGAAGAGGAGAGGCCAAAACAAAAAAAAAAAAAACAAAAATGTTGGAGCCCGTCAGACCGCCATGCGACCATCCCAGCAGGACAAAGCCAGCCGAGAACGATCCTCTACAGCCGCAGAACCCAGAGGTTCGTTGGCAGTTAATCACGCTCTAGTCACACGGCAGTGGTTCATCCACCAGACTAAAGTTCTTGTCTCCTTAGAACTCAAGGACACAGTTGTACAACCTATAGAACAGATCCTGTTCAAGAGCGTGGTTCATCCACCAGACTATGGTTCTTGTCTCCTTAGAACTCAAGGAGACAGTTGTACAACCTATAGAACAGATCCTGTTCAAGTAAGGTCGTACCCTGTCTGCTTCATTCTTCCGTTTAAGTATTGTAATTCTAGTTTACAACTTATCGATGTGGGACATTTGGCAACTTGCGCTTAG

Coding sequence (CDS)

ATGGGTGGAATTGAGCTGAAGATGAAGAAACCAACTGTAGTACAGAACAAACGTATGCGTTCAAGGAGTAAAACAGCCGGAAGAATTCAGAAGCTAAGAAAGAACCAGAAGCTAAGAAAGAACCCAGTAAAGAAAACCAAAAGGAAGAGGAGAGGCCAAAACAAAAAAAAAAAAAACAAAAATGTTGGAGCCCGTCAGACCGCCATGCGACCATCCCAGCAGGACAAAGCCAGCCGAGAACGATCCTCTACAGCCGCAGAACCCAGAGGTTCGTTGGCAGTTAATCACGCTCTAGTCACACGGCAGTGGTTCATCCACCAGACTAAAGTTCTTGTCTCCTTAGAACTCAAGGACACAGTTGTACAACCTATAGAACAGATCCTGTTCAAGAGCGTGGTTCATCCACCAGACTATGGTTCTTGTCTCCTTAGAACTCAAGGAGACAGTTGTACAACCTATAGAACAGATCCTGTTCAAGTAAGGTCGTACCCTGTCTGCTTCATTCTTCCGTTTAAGTATTGTAATTCTAGTTTACAACTTATCGATGTGGGACATTTGGCAACTTGCGCTTAG

Protein sequence

MGGIELKMKKPTVVQNKRMRSRSKTAGRIQKLRKNQKLRKNPVKKTKRKRRGQNKKKKNKNVGARQTAMRPSQQDKASRERSSTAAEPRGSLAVNHALVTRQWFIHQTKVLVSLELKDTVVQPIEQILFKSVVHPPDYGSCLLRTQGDSCTTYRTDPVQVRSYPVCFILPFKYCNSSLQLIDVGHLATCA
Homology
[Close]
BLAST of Lag0011926 vs. NCBI nr
Match: CAD1827950.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-07
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 66  QTAMRPSQQDKASRERSSTAAEPRGSLAVNHALVTRQWFIHQTKVLVSLELKDTVVQPIE 125
           QT   P++   A + RSSTA + +   AVNHAL  R  FIHQT + VS  LKDTVVQPIE
Sbjct: 111 QTTSEPTRLAFAGQGRSSTAGDSQRISAVNHALALRSCFIHQTLLPVSFTLKDTVVQPIE 170

Query: 126 QILFK 131
           QILFK
Sbjct: 171 QILFK 175

[Close]
BLAST of Lag0011926 vs. NCBI nr
Match: KEH27642.1 (hypothetical protein MTR_5g024973 [Medicago truncatula])

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-06
Identity = 42/85 (49.41%), Postives = 47/85 (55.29%), Query Frame = 0 

Query: 79  RERSSTAAEPRG-SLAVNHALVTRQWFIHQTKVLVSLELKDTVVQPIEQILFKSVVHPPD 138
           RERSSTA +     LAVNHAL+TR WFIHQT V VSLE+KDTVV+               
Sbjct: 12  RERSSTAEDDAHIILAVNHALITRSWFIHQTYVPVSLEIKDTVVR--------------- 67

Query: 139 YGSCLLRTQGDSCTTYRTDPVQVRS 163
                         +YRTDPVQVRS
Sbjct: 72  --------------SYRTDPVQVRS 67

[Close]
BLAST of Lag0011926 vs. NCBI nr
Match: CAD1827963.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-06
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 66  QTAMRPSQQDKASRERSSTAAEPRGSLAVNHALVTRQWFIHQTKVLVSLELKDTVVQPIE 125
           +T   P++   A + RSSTA + +   AVNHAL  R  FIHQT + VS  LKDTVVQPI+
Sbjct: 120 KTTSEPTRLAFAGQGRSSTAGDSQRISAVNHALALRSCFIHQTLLPVSFTLKDTVVQPID 179

Query: 126 QILFK 131
           QILFK
Sbjct: 180 QILFK 184

[Close]
BLAST of Lag0011926 vs. NCBI nr
Match: KEH21553.1 (hypothetical protein MTR_7g007390 [Medicago truncatula])

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-04
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 79  RERSSTAAEPRG-SLAVNHALVTRQWFIHQTKVLVSLELKDTVVQ 123
           +ERSSTA +     +AVNHAL+TR WFIHQT V VSLE+KDTVV+
Sbjct: 29  QERSSTAEDDAHIIMAVNHALITRSWFIHQTYVPVSLEIKDTVVR 73

The following BLAST results are available for this feature:
BLAST of Lag0011926 vs. NCBI nr
Match NameE-valueIdentityDescription
CAD1827950.19.9e-0758.46unnamed protein product [Ananas comosus var. bracteatus][more]
KEH27642.12.2e-0649.41hypothetical protein MTR_5g024973 [Medicago truncatula][more]
CAD1827963.16.4e-0655.38unnamed protein product [Ananas comosus var. bracteatus][more]
KEH21553.14.6e-0466.67hypothetical protein MTR_7g007390 [Medicago truncatula][more]
BLAST of Lag0011926 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011926.1Lag0011926.1mRNA