Lag0011906 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011906
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 34759697 .. 34760228 (+)
RNA-Seq Expression	Lag0011906
Synteny	Lag0011906

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTCTACAGTATGATGAAGGGGTTGAAGCTCAATGTTGGGAGCATTATACGTGAGGAGATTCTCTCTTGTGGGAGAAAGAAAGTCGAGAAATTATTCTTTGGGTCCATGATAACCCAACTGTGCCAGAAAGTTAAGATCGTTTCAGGGAAGGATGAGGAGCGACACTTCTGCAAGCCTACTATCGATCTACCTTCGATAGGGAAGTTACAACTCTATAACGCACAGTGGAAAAATAAGGCTTCCACTTTCAGGCTACTCCTTCACCAGGGCCGACACCTGCTTCACCGCCGCCATCCACTACTATTTCAGGGCTTACTCCATAGATCACATTGAAGACCATTTGAAAGCATATTGGGTTTATGCCAAAGAGCGGGATGAAGCCATTAAAGAGTTTTACCTGTCTATCGCCCCTAGCATTGCCCCTGTCTTTCCTGACTTTCCACAAAGTTTACTGCCTCAAGACCCCGAAGAATCTGATGAAGATGAAGAAGAAGAGAATGAAGATTGTTCCTCAGAGGAGGAATAG

mRNA sequence

ATGTTTCTCTACAGTATGATGAAGGGGTTGAAGCTCAATGTTGGGAGCATTATACGTGAGGAGATTCTCTCTTGTGGGAGAAAGAAAGTCGAGAAATTATTCTTTGGGTCCATGATAACCCAACTGTGCCAGAAAGGAAGTTACAACTCTATAACGCACAGTGGAAAAATAAGGCTTCCACTTTCAGGCTACTCCTTCACCAGGGCCGACACCTGCTTCACCGCCGCCATCCACTACTATTTCAGGGCTTACTCCATAGATCACATTGAAGACCATTTGAAAGCATATTGGGTTTATGCCAAAGAGCGGGATGAAGCCATTAAAGAGTTTTACCTGTCTATCGCCCCTAGCATTGCCCCTGTCTTTCCTGACTTTCCACAAAGTTTACTGCCTCAAGACCCCGAAGAATCTGATGAAGATGAAGAAGAAGAGAATGAAGATTGTTCCTCAGAGGAGGAATAG

Coding sequence (CDS)

ATGTTTCTCTACAGTATGATGAAGGGGTTGAAGCTCAATGTTGGGAGCATTATACGTGAGGAGATTCTCTCTTGTGGGAGAAAGAAAGTCGAGAAATTATTCTTTGGGTCCATGATAACCCAACTGTGCCAGAAAGGAAGTTACAACTCTATAACGCACAGTGGAAAAATAAGGCTTCCACTTTCAGGCTACTCCTTCACCAGGGCCGACACCTGCTTCACCGCCGCCATCCACTACTATTTCAGGGCTTACTCCATAGATCACATTGAAGACCATTTGAAAGCATATTGGGTTTATGCCAAAGAGCGGGATGAAGCCATTAAAGAGTTTTACCTGTCTATCGCCCCTAGCATTGCCCCTGTCTTTCCTGACTTTCCACAAAGTTTACTGCCTCAAGACCCCGAAGAATCTGATGAAGATGAAGAAGAAGAGAATGAAGATTGTTCCTCAGAGGAGGAATAG

Protein sequence

MFLYSMMKGLKLNVGSIIREEILSCGRKKVEKLFFGSMITQLCQKGSYNSITHSGKIRLPLSGYSFTRADTCFTAAIHYYFRAYSIDHIEDHLKAYWVYAKERDEAIKEFYLSIAPSIAPVFPDFPQSLLPQDPEESDEDEEEENEDCSSEEE

Homology

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BLAST of Lag0011906 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-04
Identity = 50/188 (26.60%), Postives = 79/188 (42.02%), Query Frame = 0


Query: 1   MFLYSMMKGLKLNVGSIIREEILSCGRKKVEKLFFGSMITQLCQKGSYNSITHSGKIRL- 60
           + LYSM+ G  +NVG +I  EI +C  +K   LFF S+ITQLC+      + +  K+ + 
Sbjct: 71  LLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNARAPFLVNEEKLHIT 130

Query: 61  -----------------PLSGYSFTRADTCFTAA---------------------IHYYF 120
                             L+    T   T  +++                     +  Y 
Sbjct: 131 GEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKALEQRLSQQEVQQYH 190

Query: 121 RAYSIDHIEDHLKAYWVYAKERDEAIKEFYLSIAPSIAPVFPDFPQSLLPQDPE---ESD 147
               + H     + +W Y+KERD A+K+   +      P FP FPQ LL QD +   E++
Sbjct: 191 MMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQELL-QDLDYEYEAE 250

The following BLAST results are available for this feature:

BLAST of Lag0011906 vs. NCBI nr


Match Name	E-value	Identity	Description
PON59596.1	3.7e-04	26.60	hypothetical protein PanWU01x14_158080 [Parasponia andersonii]	[more]

BLAST of Lag0011906 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011906.1	Lag0011906.1	mRNA