Lag0011853 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011853
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAnkyrin repeat protein
Locationchr1: 33842832 .. 33843312 (+)
RNA-Seq ExpressionLag0011853
SyntenyLag0011853
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATGACAAGAGGTTTTAAGCTCTTTCACACTGTTTTCTTAGTGTTTGCTTGGCAGTGTTGTGCAAAGGTAACTGCCACTTTCAACGATGTCACTGGTATTGTCGATCTCGGCCTCAACCATCAATTTTCCTTCCGTGCATTTGGATCACATGGTTTTGGGATCCAAAAGTTGACGGTAGTGTCGCACCAATGTAGACATGCAGAGTCCTGCAGAAGCACCGGGGATTGCCCCTGTTGGGCTTGAAACTCCAATGAGCAAAGACAATAAAGCTTTGTCTTTTAGTCTTGAAATTAAGAAGGGTCTCACTACATCCCTTGGTCTCGAAATTCCCAAGAGCAAGGGCGACGTTGTTGTTTCTCATGGTCACGAAATAAGGAAGAAGAGTGGCGTCAACATTGATATTTCCAATGGTGGAAAAGTTAGTTTGAAGAGCAGCGGTAGTGTTGTTGTTCAAATGCTGGCAAGCCTGGTCTGA

mRNA sequence

ATGACAATGACAAGAGGTTTTAAGCTCTTTCACACTGTTTTCTTAGTGTTTGCTTGGCAGTGTTGTGCAAAGGTAACTGCCACTTTCAACGATGTCACTGACATGCAGAGTCCTGCAGAAGCACCGGGGATTGCCCCTGTTGGGCTTGAAACTCCAATGAGCAAAGACAATAAAGCTTTGTCTTTTAGTCTTGAAATTAAGAAGGGTCTCACTACATCCCTTGGTCTCGAAATTCCCAAGAGCAAGGGCGACGTTGTTGTTTCTCATGGTCACGAAATAAGGAAGAAGAGTGGCGTCAACATTGATATTTCCAATGGTGGAAAAGTTAGTTTGAAGAGCAGCGGTAGTGTTGTTGTTCAAATGCTGGCAAGCCTGGTCTGA

Coding sequence (CDS)

ATGACAATGACAAGAGGTTTTAAGCTCTTTCACACTGTTTTCTTAGTGTTTGCTTGGCAGTGTTGTGCAAAGGTAACTGCCACTTTCAACGATGTCACTGACATGCAGAGTCCTGCAGAAGCACCGGGGATTGCCCCTGTTGGGCTTGAAACTCCAATGAGCAAAGACAATAAAGCTTTGTCTTTTAGTCTTGAAATTAAGAAGGGTCTCACTACATCCCTTGGTCTCGAAATTCCCAAGAGCAAGGGCGACGTTGTTGTTTCTCATGGTCACGAAATAAGGAAGAAGAGTGGCGTCAACATTGATATTTCCAATGGTGGAAAAGTTAGTTTGAAGAGCAGCGGTAGTGTTGTTGTTCAAATGCTGGCAAGCCTGGTCTGA

Protein sequence

MTMTRGFKLFHTVFLVFAWQCCAKVTATFNDVTDMQSPAEAPGIAPVGLETPMSKDNKALSFSLEIKKGLTTSLGLEIPKSKGDVVVSHGHEIRKKSGVNIDISNGGKVSLKSSGSVVVQMLASLV
Homology
BLAST of Lag0011853 vs. NCBI nr
Match: KAE8646352.1 (hypothetical protein Csa_015951, partial [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-14
Identity = 64/153 (41.83%), Postives = 78/153 (50.98%), Query Frame = 0

Query: 1   MTMTRGFKLFHTVFLVFAWQ-CCAKVTATFNDVT-------------------------- 60
           M M RGF LF T+ LVFAW+ CCA+V ATF+D T                          
Sbjct: 1   MPMARGFTLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPNV 60

Query: 61  --------DMQSPAEAP-GIAPVGLETPMSKDNKALSFSLEIKKGLTTSLGLEIPKSKGD 118
                   + Q  AEAP GIAPVGLET ++K++K  S+ L+I K +            G 
Sbjct: 61  DGSITSTVEKQIRAEAPAGIAPVGLETMINKEDKVQSYDLDIIKQI----------KGGG 120

BLAST of Lag0011853 vs. NCBI nr
Match: KAA0048674.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-14
Identity = 63/153 (41.18%), Postives = 79/153 (51.63%), Query Frame = 0

Query: 1   MTMTRGFKLFHTVFLVFAWQ-CCAKVTATFNDVTDM------------------------ 60
           M MTRGFKLF T+ LVFAW+ CCA+V ATF D T +                        
Sbjct: 1   MAMTRGFKLFQTLCLVFAWKYCCAQVGATFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNV 60

Query: 61  ----------QSPAEAP-GIAPVGLETPMSKDNKALSFSLEIKKGLTTSLGLEIPKSKGD 118
                     Q  AEAP GIAPVGL+T ++K+ KA S+ L+I           I + KG 
Sbjct: 61  DGTITSTVKKQIRAEAPAGIAPVGLQTLINKEKKAQSYDLDI-----------IKQIKGG 120

BLAST of Lag0011853 vs. NCBI nr
Match: XP_023004881.1 (uncharacterized protein LOC111498059 [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 56/135 (41.48%), Postives = 73/135 (54.07%), Query Frame = 0

Query: 1   MTMTRGFKLFHTVFLVFAWQCCAKVTATFNDVTDM-------QSPAEAPGIAPVGL---- 60
           M   RGF + H +FLV AW+CCA++ ATFNDVT +       +    + G   +G+    
Sbjct: 1   MAAVRGFNIVHALFLVLAWECCARLGATFNDVTGVIGQGRNHRFSFRSFGDHYIGISKFD 60

Query: 61  -----ETPMSKDNKALSFSLEIKKGLTTSLGLEIPKSKGDVVVSHGHEIRKKSGVNIDIS 117
                 + +S D+KA SF  EIKKG    +G E+PK  G    S GHEI +K G NI  S
Sbjct: 61  HTAIQSSEVSVDDKASSFRNEIKKGGAAFVGREVPKINGGGGFSKGHEIIRKRGGNIVYS 120

BLAST of Lag0011853 vs. NCBI nr
Match: XP_023514551.1 (uncharacterized protein LOC111778808 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 6.8e-12
Identity = 55/135 (40.74%), Postives = 73/135 (54.07%), Query Frame = 0

Query: 1   MTMTRGFKLFHTVFLVFAWQCCAKVTATFNDVTDMQSPAEAP------------GIAP-- 60
           M   RGF + H +FLV AW+CCA++ ATFNDVT +   +               GI+   
Sbjct: 1   MAAVRGFNIVHALFLVLAWECCARLGATFNDVTGVIGKSRNHRFSFRSFGDHYIGISKFD 60

Query: 61  -VGLETP-MSKDNKALSFSLEIKKGLTTSLGLEIPKSKGDVVVSHGHEIRKKSGVNIDIS 117
              +++P +S D+KA SF  EIKKG    +G E+P   G    S GHEI +K G NI  S
Sbjct: 61  HTAIQSPEVSVDDKASSFRNEIKKGGAGFVGREVPNINGGGGYSKGHEIIRKRGGNIVYS 120

BLAST of Lag0011853 vs. NCBI nr
Match: XP_022960412.1 (uncharacterized protein LOC111461146 [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-11
Identity = 56/134 (41.79%), Postives = 71/134 (52.99%), Query Frame = 0

Query: 1   MTMTRGFKLFHTVFLVFAWQCCAKVTATFNDVTDMQSPAEAP------------GIAP-- 60
           M   RGF + H +FLV AW+CCA++ ATFNDVT +                   GI+   
Sbjct: 1   MAAVRGFNIVHALFLVLAWECCARLGATFNDVTGVIGKGRNHRFSFRSFGDHHIGISKFD 60

Query: 61  -VGLETP-MSKDNKALSFSLEIKKGLTTSLGLEIPKSKGDVVVSHGHEIRKKSGVNIDIS 116
              +++P +S D+KA SF  EIKK     +G E+PK  G    S GHEI +K G NI  S
Sbjct: 61  HTAIQSPEVSVDDKASSFRNEIKKDGAGFVGREVPKINGGGGFSKGHEIIRKRGGNIVYS 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646352.13.2e-1441.83hypothetical protein Csa_015951, partial [Cucumis sativus][more]
KAA0048674.15.5e-1441.18Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat pro... [more]
XP_023004881.11.4e-1241.48uncharacterized protein LOC111498059 [Cucurbita maxima][more]
XP_023514551.16.8e-1240.74uncharacterized protein LOC111778808 [Cucurbita pepo subsp. pepo][more]
XP_022960412.11.2e-1141.79uncharacterized protein LOC111461146 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011853.1Lag0011853.1mRNA