Lag0011843 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011843
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 33675412 .. 33676110 (+)
RNA-Seq ExpressionLag0011843
SyntenyLag0011843
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTTCGACAAATGCCCTCAACAAGTTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCTTAGCAGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCTAGTACGTGGGAAACAGACAATTTACTCAAGGAGTACCAAACTTCTACCACCCAAGTCTGCGCAATCATGAGAACTTCTCGTACTCAAACACGAAGAATGTTTTGCAGCCACCACCAGGTTTTGCATCATCCAGTACGCCTGAAAAGAAGAGTAACTTGGAGGAGATGGTGGCTATGTTTATAAAAGAACAAAAAGTGTTGAATGTGAATCTCCAAACGACAGTTAATAACCACGACACAGCTCTGAAAAGCATGGAAGTTCAGATAGGTCAGATCGCTTCAGAGGTAAAGGCCCTTCAGAAGGGAAAATTTCCAAGCGACACTGAACCTAACCCAAGAGAGGAGTGCAAGATGGTGACACTAAGAAGTGGTAGACAGTTGGAGAACAATTCAGAAAAGAAGAAGAAAGAAGAGAAGAGCAAGGATGAAGATGAAAGGACTGAGGCACAAAAAGCCTCCTCTGAAAGGTCCCGGCATTCTCCTAACTCTATTGATTTGGATTGTGGATTTTCTAACAATTTTGCAGGAAGAAAAGAAGATGAACAGAAGAATGGCAGGCATGAAGAGAAACTGAACGAGGAATAA

mRNA sequence

ATGGCATCTTCGACAAATGCCCTCAACAAGTTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCTTAGCAGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCTATACGCCTGAAAAGAAGAGTAACTTGGAGGAGATGGTGGCTATGTTTATAAAAGAACAAAAAGTGTTGAATGTGAATCTCCAAACGACAGTTAATAACCACGACACAGCTCTGAAAAGCATGGAAGTTCAGATAGGTCAGATCGCTTCAGAGGTAAAGGCCCTTCAGAAGGGAAAATTTCCAAGCGACACTGAACCTAACCCAAGAGAGGAGTGCAAGATGGTGACACTAAGAAGTGGTAGACAGTTGGAGAACAATTCAGAAAAGAAGAAGAAAGAAGAGAAGAGCAAGGATGAAGATGAAAGGACTGAGGCACAAAAAGCCTCCTCTGAAAGGTCCCGGCATTCTCCTAACTCTATTGATTTGGATTGTGGATTTTCTAACAATTTTGCAGGAAGAAAAGAAGATGAACAGAAGAATGGCAGGCATGAAGAGAAACTGAACGAGGAATAA

Coding sequence (CDS)

ATGGCATCTTCGACAAATGCCCTCAACAAGTTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCTTAGCAGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCTATACGCCTGAAAAGAAGAGTAACTTGGAGGAGATGGTGGCTATGTTTATAAAAGAACAAAAAGTGTTGAATGTGAATCTCCAAACGACAGTTAATAACCACGACACAGCTCTGAAAAGCATGGAAGTTCAGATAGGTCAGATCGCTTCAGAGGTAAAGGCCCTTCAGAAGGGAAAATTTCCAAGCGACACTGAACCTAACCCAAGAGAGGAGTGCAAGATGGTGACACTAAGAAGTGGTAGACAGTTGGAGAACAATTCAGAAAAGAAGAAGAAAGAAGAGAAGAGCAAGGATGAAGATGAAAGGACTGAGGCACAAAAAGCCTCCTCTGAAAGGTCCCGGCATTCTCCTAACTCTATTGATTTGGATTGTGGATTTTCTAACAATTTTGCAGGAAGAAAAGAAGATGAACAGAAGAATGGCAGGCATGAAGAGAAACTGAACGAGGAATAA

Protein sequence

MASSTNALNKLTSSEVVKSISTLAEGYSKKEGQDVEEVYTPEKKSNLEEMVAMFIKEQKVLNVNLQTTVNNHDTALKSMEVQIGQIASEVKALQKGKFPSDTEPNPREECKMVTLRSGRQLENNSEKKKKEEKSKDEDERTEAQKASSERSRHSPNSIDLDCGFSNNFAGRKEDEQKNGRHEEKLNEE
Homology
BLAST of Lag0011843 vs. NCBI nr
Match: XP_024020480.1 (uncharacterized protein LOC112091333 [Morus notabilis])

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-11
Identity = 50/115 (43.48%), Postives = 77/115 (66.96%), Query Frame = 0

Query: 42  EKKSNLEEMVAMFI--------KEQKVLNVNLQTTVNNHDTALKSMEVQIGQIASEVKAL 101
           EKK ++E++++ FI        K++  L+ N++T  NN +  +KS+EVQIGQ+A+ VK  
Sbjct: 337 EKKPSVEDLLSTFIVETRGRFNKDEARLD-NIETHYNNMNATMKSLEVQIGQLANTVKGQ 396

Query: 102 QKGKFPSDTEPNPREECKMVTLRSGRQLENNSEKKKKEEKSKDEDERTEAQKASS 149
             GKFPSDTEPNP + CK +TLRSG+++E     K +E+K ++E+  TE  K S+
Sbjct: 397 SSGKFPSDTEPNPNDHCKAITLRSGKEVE---APKPQEDKIEEEEVGTEQPKESA 447

BLAST of Lag0011843 vs. NCBI nr
Match: XP_024029937.1 (uncharacterized protein LOC112094091 [Morus notabilis])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 0

Query: 42  EKKSNLEEMVAMFI--------KEQKVLNVNLQTTVNNHDTALKSMEVQIGQIASEVKAL 101
           EKK ++E++++ FI        K++  L+ N++T  NN +  +KS+EV+IGQ+A+ VK  
Sbjct: 234 EKKPSVEDLLSTFIVETRGRFNKDEARLD-NIETHCNNMNATMKSLEVKIGQLANAVKGQ 293

Query: 102 QKGKFPSDTEPNPREECKMVTLRSGRQLENNSEKKKKEEKSKDEDERTEAQKASS 149
             GKFPSDTEPN ++ CK +TLRSG+++E     K +E+K+K+E+  TE  K S+
Sbjct: 294 SSGKFPSDTEPNSKDHCKAITLRSGKEVE---APKPQEDKTKEEEVGTEQPKESA 344

BLAST of Lag0011843 vs. NCBI nr
Match: XP_022883911.1 (uncharacterized protein LOC111400758 [Olea europaea var. sylvestris])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 44  KSNLEEMVAMFIKE-------QKVLNVNLQTTVNNHDTALKSMEVQIGQIASEVKALQKG 103
           K  LE+++  FI E        ++   N++T V+N    +K++EVQIGQ+A+ +K+ QKG
Sbjct: 149 KPPLEDILGTFISETRSCFNKNELRLDNIETHVSNMGATMKNLEVQIGQLATSMKSQQKG 208

Query: 104 KFPSDTEPNPREECKMVTLRSGRQLENNSEKK 129
           KFPSDTE NPRE C ++TLRSG+ +E +  KK
Sbjct: 209 KFPSDTEVNPREHCNVITLRSGKMVEESKPKK 240

BLAST of Lag0011843 vs. NCBI nr
Match: XP_024032903.1 (uncharacterized protein LOC112095347 [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-10
Identity = 57/147 (38.78%), Postives = 88/147 (59.86%), Query Frame = 0

Query: 42  EKKSNLEEMVAMFI--------KEQKVLNVNLQTTVNNHDTALKSMEVQIGQIASEVKAL 101
           EKK ++E++++ FI        K++  L+ N++T  NN +  +KS+EVQIGQ+A+ VK  
Sbjct: 320 EKKPSVEDLLSTFIVETRGRFNKDEARLD-NIETHCNNMNATMKSLEVQIGQLANVVKGQ 379

Query: 102 QKGKFPSDTEPNPREECKMVTLRSGRQLENNSEKKKKEEKSKDEDERTEAQKASSERSRH 161
             GKFPSDTEPNP++ CK +TLRSG+++E     K +E+K+++E+  TE  K S+     
Sbjct: 380 SSGKFPSDTEPNPKDHCKAITLRSGKEVE---APKPQEDKTEEEEVGTEQLKESARPKSI 439

Query: 162 S----PNSIDLDCGFSNNFAGRKEDEQ 177
           S    P  I     +   F  +K D Q
Sbjct: 440 SFPDNPPLITPTLPYPQRFKKKKLDAQ 462

BLAST of Lag0011843 vs. NCBI nr
Match: XP_035539656.1 (uncharacterized protein LOC118344026 [Juglans regia])

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-10
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 0

Query: 42  EKKSNLEEMVAMFIKEQKVLNV-------NLQTTVNNHDTALKSMEVQIGQIASEVKALQ 101
           EKK +LE+ +  F++E             N++T  +N   A+K++EVQIGQ+A+ + A Q
Sbjct: 180 EKKISLEDAMVSFVEETNTRFKKTDSRLDNIETHCSNMGAAIKNIEVQIGQLATTINAQQ 239

Query: 102 KGKFPSDTEPNPREECKMVTLRSGRQLENN 125
           +G FPS+TE NPRE+CK +TLRSGR+L+ +
Sbjct: 240 RGTFPSNTEVNPREQCKAITLRSGRELDRS 269

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024020480.15.0e-1143.48uncharacterized protein LOC112091333 [Morus notabilis][more]
XP_024029937.11.1e-1042.61uncharacterized protein LOC112094091 [Morus notabilis][more]
XP_022883911.11.1e-1045.65uncharacterized protein LOC111400758 [Olea europaea var. sylvestris][more]
XP_024032903.11.9e-1038.78uncharacterized protein LOC112095347 [Morus notabilis][more]
XP_035539656.14.2e-1044.44uncharacterized protein LOC118344026 [Juglans regia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 121..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011843.1Lag0011843.1mRNA