Lag0011792 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011792
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr1: 33034636 .. 33035622 (-)
RNA-Seq Expression	Lag0011792
Synteny	Lag0011792

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCGGCCTTGGCATCATCAAACAGAAGAACTCTTCTCTCTTGGCTAAATGGATTTGGCGCTTTGAAAGCGAGAGGAGCTCTATGGCGTCGACTCATAGCTACTAAATATAGGTCCACCCATTATGATCTAAAGCCAGATACAAAATCTCTAAATTCATCCAAAGGTCCATGGAAATCTATTGATGGCTTGAAAATCCTGGTGTACTCCAATGTATCTATCAAGGTGGGCGATGGTAAAAACACTTCCTTCTGGAAGGACGAGTGGTCGGGGAATATGAGCCTCCAACTTTTGAATCCCAGATTACATCATCTATCGACCAAAAAAGATGCTCCCATAGCTGATTTTTGGTGCTCCCAGTCTAAATCTTGGGTGTGCTACTCAAGGAGAAACCTCACAGACTCACAAGCTGAAGACTGGATCTCATTGGTATCCAACTTACAAACGGTGATTATTAATGATAGAAGCGACATTTGGTGGTGGGAATTAGAGAGAGATAAATCATTCTCTTCTAAATCTCTTTCTAACCTCTTATCATCCTCCTCGCCAAGTGCTTATTCAGAATTATACCAGCACATTTGGGTTGGTCGATACCCCAAAAAGGTAAAATTCTTCCTTTGGGAAGTTAGCCATTCTTGCATCAACACACATGACAAGCTTCAAAAGAGATATCTTGGGACGATGTTATCGCCATCTTGCTGTCCATTATGTTATAGTTATAGTGATGAAGAATCATTGATCCACCTTTTCAGCAGCTGCTCATATGCTTCAAAGTTTTGGAGCTTCCTACAAGCCACATTTGATTGGGTCTTCCCAAGACCGAGTCATATTCTATCCCTTCTATCTCTTACTCTTTTGGGTCATCCCTTCAAAAATGATAAAAAGATCCTATGTGTCATGTTCGGGCTTTCTTCTGGAACCTATGGTTGGAGCGTAATGGTCGCATTTTCAAGGACAAGACTAAAGACATTGGATTCTTCTTAG

mRNA sequence

ATGAAGGCGGCCTTGGCATCATCAAACAGAAGAACTCTTCTCTCTTGGCTAAATGGATTTGGCGCTTTGAAAGCGAGAGGAGCTCTATGGCGTCGACTCATAGCTACTAAATATAGGTCCACCCATTATGATCTAAAGCCAGATACAAAATCTCTAAATTCATCCAAAGGTCCATGGAAATCTATTGATGGCTTGAAAATCCTGGTGTACTCCAATGTATCTATCAAGGTGGGCGATGGTAAAAACACTTCCTTCTGGAAGGACGAGTGGTCGGGGAATATGAGCCTCCAACTTTTGAATCCCAGATTACATCATCTATCGACCAAAAAAGATGCTCCCATAGCTGATTTTTGGTGCTCCCAGTCTAAATCTTGGGTGTGCTACTCAAGGAGAAACCTCACAGACTCACAAGCTGAAGACTGGATCTCATTGGTATCCAACTTACAAACGGTGATTATTAATGATAGAAGCGACATTTGGTGGTGGGAATTAGAGAGAGATAAATCATTCTCTTCTAAATCTCTTTCTAACCTCTTATCATCCTCCTCGCCAAGTGCTTATTCAGAATTATACCAGCACATTTGGGTTGGTCGATACCCCAAAAAGGTAAAATTCTTCCTTTGGGAAGTTAGCCATTCTTGCATCAACACACATGACAAGCTTCAAAAGAGATATCTTGGGACGATGTTATCGCCATCTTGCTGTCCATTATGTTATAGTTATAGTGATGAAGAATCATTGATCCACCTTTTCAGCAGCTGCTCATATGCTTCAAAGTTTTGGAGCTTCCTACAAGCCACATTTGATTGGGTCTTCCCAAGACCGAGTCATATTCTATCCCTTCTATCTCTTACTCTTTTGGGTCATCCCTTCAAAAATGATAAAAAGATCCTATGTGTCATGTTCGGGCTTTCTTCTGGAACCTATGGTTGGAGCGTAATGGTCGCATTTTCAAGGACAAGACTAAAGACATTGGATTCTTCTTAG

Coding sequence (CDS)

ATGAAGGCGGCCTTGGCATCATCAAACAGAAGAACTCTTCTCTCTTGGCTAAATGGATTTGGCGCTTTGAAAGCGAGAGGAGCTCTATGGCGTCGACTCATAGCTACTAAATATAGGTCCACCCATTATGATCTAAAGCCAGATACAAAATCTCTAAATTCATCCAAAGGTCCATGGAAATCTATTGATGGCTTGAAAATCCTGGTGTACTCCAATGTATCTATCAAGGTGGGCGATGGTAAAAACACTTCCTTCTGGAAGGACGAGTGGTCGGGGAATATGAGCCTCCAACTTTTGAATCCCAGATTACATCATCTATCGACCAAAAAAGATGCTCCCATAGCTGATTTTTGGTGCTCCCAGTCTAAATCTTGGGTGTGCTACTCAAGGAGAAACCTCACAGACTCACAAGCTGAAGACTGGATCTCATTGGTATCCAACTTACAAACGGTGATTATTAATGATAGAAGCGACATTTGGTGGTGGGAATTAGAGAGAGATAAATCATTCTCTTCTAAATCTCTTTCTAACCTCTTATCATCCTCCTCGCCAAGTGCTTATTCAGAATTATACCAGCACATTTGGGTTGGTCGATACCCCAAAAAGGTAAAATTCTTCCTTTGGGAAGTTAGCCATTCTTGCATCAACACACATGACAAGCTTCAAAAGAGATATCTTGGGACGATGTTATCGCCATCTTGCTGTCCATTATGTTATAGTTATAGTGATGAAGAATCATTGATCCACCTTTTCAGCAGCTGCTCATATGCTTCAAAGTTTTGGAGCTTCCTACAAGCCACATTTGATTGGGTCTTCCCAAGACCGAGTCATATTCTATCCCTTCTATCTCTTACTCTTTTGGGTCATCCCTTCAAAAATGATAAAAAGATCCTATGTGTCATGTTCGGGCTTTCTTCTGGAACCTATGGTTGGAGCGTAATGGTCGCATTTTCAAGGACAAGACTAAAGACATTGGATTCTTCTTAG

Protein sequence

MKAALASSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDWVFPRPSHILSLLSLTLLGHPFKNDKKILCVMFGLSSGTYGWSVMVAFSRTRLKTLDSS

Homology

[Close]

BLAST of Lag0011792 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 2.0e-39
Identity = 95/267 (35.58%), Postives = 135/267 (50.56%), Query Frame = 0


Query: 7   SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLK 66
           S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++    
Sbjct: 683 STNFALLCKWLWKF--LTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCI 742

Query: 67  ILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWV 126
              Y N+  KV DG++ SFW D W+GN  L L+ PRL  LST K   + D W    K W 
Sbjct: 743 SWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWN 802

Query: 127 CYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA 186
            +  R L D +   W ++ ++L T + +       W+L  +  F + S+   LS +S S 
Sbjct: 803 IHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASP 862

Query: 187 ---YSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSD 246
              +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     
Sbjct: 863 TNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC--NKS 922

Query: 247 EESLIHLFSSCSYASKFWSFLQATFDW 271
           +E + HLF  C Y+ + WS  QA   W
Sbjct: 923 QEDINHLFIHCPYSQQLWSKAQALLKW 945

[Close]

BLAST of Lag0011792 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 3.4e-39
Identity = 95/267 (35.58%), Postives = 134/267 (50.19%), Query Frame = 0


Query: 7   SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLK 66
           S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++    
Sbjct: 589 STNFALLCKWLWKF--LTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCI 648

Query: 67  ILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWV 126
              Y N+  KV DG++ SFW D W+GN  L L  PRL  LST K   + D W    K W 
Sbjct: 649 SWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWN 708

Query: 127 CYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA 186
            +  R L D +   W ++ ++L T + +       W+L  +  F + S+   LS +S S 
Sbjct: 709 IHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASP 768

Query: 187 ---YSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSD 246
              +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     
Sbjct: 769 TNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC--NKS 828

Query: 247 EESLIHLFSSCSYASKFWSFLQATFDW 271
           +E + HLF  C Y+ + WS  QA   W
Sbjct: 829 QEDINHLFIHCPYSQQLWSKAQALLKW 851

[Close]

BLAST of Lag0011792 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 3.4e-39
Identity = 96/279 (34.41%), Postives = 141/279 (50.54%), Query Frame = 0


Query: 7    SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLK 66
            S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++    
Sbjct: 791  STNFALLCKWLWKF--LTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECI 850

Query: 67   ILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWV 126
               Y N+S KV DG++ SFW D W+GN  L L  PRL  LST K   + +FW   S  W 
Sbjct: 851  SWFYKNISWKVNDGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWH 910

Query: 127  CYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SS 186
             +  R L D +   W ++ ++L T + N       W L  +  F + S+   ++    S 
Sbjct: 911  LHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISP 970

Query: 187  PSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSD 246
             + +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     
Sbjct: 971  ANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC--NKS 1030

Query: 247  EESLIHLFSSCSYASKFWSFLQATFDWVFPRPSHILSLL 283
            +E + HLF  C Y+ + WS  +A  +W    P+ + SL+
Sbjct: 1031 QEDINHLFIHCPYSQQLWSKAKALLNW-NSTPTDVQSLI 1064

[Close]

BLAST of Lag0011792 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 9.9e-31
Identity = 74/198 (37.37%), Postives = 106/198 (53.54%), Query Frame = 0


Query: 76  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTD 135
           KV DG++ SFW D W+GN  L L+ PRL  LST K   + DFW   S  W  +  R L D
Sbjct: 201 KVNDGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHINRPLRD 260

Query: 136 SQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SSPSAYSELYQ 195
            +   W ++ ++L T + N       W+L  +  F + S+  +LS    S  + +  LY+
Sbjct: 261 HEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYK 320

Query: 196 HIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFS 255
            +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF 
Sbjct: 321 TLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMC--NKSQEDINHLFI 380

Query: 256 SCSYASKFWSFLQATFDW 271
            C Y+ + WS  +A   W
Sbjct: 381 HCPYSQQLWSKAKALLKW 396

[Close]

BLAST of Lag0011792 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 9.9e-31
Identity = 74/198 (37.37%), Postives = 106/198 (53.54%), Query Frame = 0


Query: 76  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTD 135
           KV DG++ SFW D W+GN  L L+ PRL  LST K   + DFW   S  W  +  R L D
Sbjct: 158 KVNDGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHINRPLRD 217

Query: 136 SQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SSPSAYSELYQ 195
            +   W ++ ++L T + N       W+L  +  F + S+  +LS    S  + +  LY+
Sbjct: 218 HEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYK 277

Query: 196 HIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFS 255
            +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF 
Sbjct: 278 TLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMC--NKSQEDINHLFI 337

Query: 256 SCSYASKFWSFLQATFDW 271
            C Y+ + WS  +A   W
Sbjct: 338 HCPYSQQLWSKAKALLKW 353

[Close]

BLAST of Lag0011792 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 9.6e-40
Identity = 95/267 (35.58%), Postives = 135/267 (50.56%), Query Frame = 0


Query: 7   SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLK 66
           S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++    
Sbjct: 683 STNFALLCKWLWKF--LTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCI 742

Query: 67  ILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWV 126
              Y N+  KV DG++ SFW D W+GN  L L+ PRL  LST K   + D W    K W 
Sbjct: 743 SWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWN 802

Query: 127 CYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA 186
            +  R L D +   W ++ ++L T + +       W+L  +  F + S+   LS +S S 
Sbjct: 803 IHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASP 862

Query: 187 ---YSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSD 246
              +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     
Sbjct: 863 TNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC--NKS 922

Query: 247 EESLIHLFSSCSYASKFWSFLQATFDW 271
           +E + HLF  C Y+ + WS  QA   W
Sbjct: 923 QEDINHLFIHCPYSQQLWSKAQALLKW 945

[Close]

BLAST of Lag0011792 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 96/279 (34.41%), Postives = 141/279 (50.54%), Query Frame = 0


Query: 7    SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLK 66
            S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++    
Sbjct: 791  STNFALLCKWLWKF--LTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECI 850

Query: 67   ILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWV 126
               Y N+S KV DG++ SFW D W+GN  L L  PRL  LST K   + +FW   S  W 
Sbjct: 851  SWFYKNISWKVNDGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWH 910

Query: 127  CYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SS 186
             +  R L D +   W ++ ++L T + N       W L  +  F + S+   ++    S 
Sbjct: 911  LHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISP 970

Query: 187  PSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSD 246
             + +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     
Sbjct: 971  ANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC--NKS 1030

Query: 247  EESLIHLFSSCSYASKFWSFLQATFDWVFPRPSHILSLL 283
            +E + HLF  C Y+ + WS  +A  +W    P+ + SL+
Sbjct: 1031 QEDINHLFIHCPYSQQLWSKAKALLNW-NSTPTDVQSLI 1064

[Close]

BLAST of Lag0011792 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 95/267 (35.58%), Postives = 134/267 (50.19%), Query Frame = 0


Query: 7   SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLK 66
           S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++    
Sbjct: 589 STNFALLCKWLWKF--LTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCI 648

Query: 67  ILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWV 126
              Y N+  KV DG++ SFW D W+GN  L L  PRL  LST K   + D W    K W 
Sbjct: 649 SWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWN 708

Query: 127 CYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA 186
            +  R L D +   W ++ ++L T + +       W+L  +  F + S+   LS +S S 
Sbjct: 709 IHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASP 768

Query: 187 ---YSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSD 246
              +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     
Sbjct: 769 TNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC--NKS 828

Query: 247 EESLIHLFSSCSYASKFWSFLQATFDW 271
           +E + HLF  C Y+ + WS  QA   W
Sbjct: 829 QEDINHLFIHCPYSQQLWSKAQALLKW 851

[Close]

BLAST of Lag0011792 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-31
Identity = 74/198 (37.37%), Postives = 106/198 (53.54%), Query Frame = 0


Query: 76  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTD 135
           KV DG++ SFW D W+GN  L L+ PRL  LST K   + DFW   S  W  +  R L D
Sbjct: 201 KVNDGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHINRPLRD 260

Query: 136 SQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SSPSAYSELYQ 195
            +   W ++ ++L T + N       W+L  +  F + S+  +LS    S  + +  LY+
Sbjct: 261 HEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYK 320

Query: 196 HIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFS 255
            +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF 
Sbjct: 321 TLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMC--NKSQEDINHLFI 380

Query: 256 SCSYASKFWSFLQATFDW 271
            C Y+ + WS  +A   W
Sbjct: 381 HCPYSQQLWSKAKALLKW 396

[Close]

BLAST of Lag0011792 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-31
Identity = 74/198 (37.37%), Postives = 106/198 (53.54%), Query Frame = 0


Query: 76  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTD 135
           KV DG++ SFW D W+GN  L L+ PRL  LST K   + DFW   S  W  +  R L D
Sbjct: 158 KVNDGEDISFWLDNWNGNAPLSLVVPRLFALSTNKKGSVKDFWNPSSNDWHLHINRPLRD 217

Query: 136 SQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SSPSAYSELYQ 195
            +   W ++ ++L T + N       W+L  +  F + S+  +LS    S  + +  LY+
Sbjct: 218 HEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYK 277

Query: 196 HIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFS 255
            +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF 
Sbjct: 278 TLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMC--NKSQEDINHLFI 337

Query: 256 SCSYASKFWSFLQATFDW 271
            C Y+ + WS  +A   W
Sbjct: 338 HCPYSQQLWSKAKALLKW 353

The following BLAST results are available for this feature:

BLAST of Lag0011792 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041397.1	2.0e-39	35.58	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044556.1	3.4e-39	35.58	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	3.4e-39	34.41	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0044451.1	9.9e-31	37.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	9.9e-31	37.37	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0011792 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0011792 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB8	9.6e-40	35.58	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	1.6e-39	34.41	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	1.6e-39	35.58	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	4.8e-31	37.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	4.8e-31	37.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lag0011792 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 170..261 e-value: 2.5E-15 score: 56.9
None	No IPR available	PANTHER	PTHR36617	PROTEIN, PUTATIVE-RELATED	coord: 28..227
None	No IPR available	PANTHER	PTHR36617:SF4	SUBFAMILY NOT NAMED	coord: 28..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011792.1	Lag0011792.1	mRNA