Lag0011710 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011710
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 31434444 .. 31434764 (-)
RNA-Seq Expression	Lag0011710
Synteny	Lag0011710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGCCAATTCTTGGCACCAACGGCGGTGGCTTACAAGTAGATGTCAGCTTGTTCAGCTCCACCGGATTATTTTTGCTTTCAACCATCATTCTTTCCATTTCTCTCATATCAATGATCATATTTGCTTGCGGTCATAACTCTCATCATTCTCCAAAGAAAAAAAAACAGCGACACCACGGCGGTGACGGTGTCGACTGTGGATGTCTCTGTGGTGGAGGTGATGGTGGAGGCGGAGGACATGACGGAGGTGGCGGTGGACATGACGGAGGCGGCGGTGGAGGCGGAGGATGTGGTGGCGGCGGAGGTGGAGGTTAA

mRNA sequence

ATGGCAAGGCCAATTCTTGGCACCAACGGCGGTGGCTTACAAGTAGATGTCAGCTTGTTCAGCTCCACCGGATTATTTTTGCTTTCAACCATCATTCTTTCCATTTCTCTCATATCAATGATCATATTTGCTTGCGGTCATAACTCTCATCATTCTCCAAAGAAAAAAAAACAGCGACACCACGGCGGTGACGGTGTCGACTGTGGATGTCTCTGTGGTGGAGGTGATGGTGGAGGCGGAGGACATGACGGAGGTGGCGGTGGACATGACGGAGGCGGCGGTGGAGGCGGAGGATGTGGTGGCGGCGGAGGTGGAGGTTAA

Coding sequence (CDS)

ATGGCAAGGCCAATTCTTGGCACCAACGGCGGTGGCTTACAAGTAGATGTCAGCTTGTTCAGCTCCACCGGATTATTTTTGCTTTCAACCATCATTCTTTCCATTTCTCTCATATCAATGATCATATTTGCTTGCGGTCATAACTCTCATCATTCTCCAAAGAAAAAAAAACAGCGACACCACGGCGGTGACGGTGTCGACTGTGGATGTCTCTGTGGTGGAGGTGATGGTGGAGGCGGAGGACATGACGGAGGTGGCGGTGGACATGACGGAGGCGGCGGTGGAGGCGGAGGATGTGGTGGCGGCGGAGGTGGAGGTTAA

Protein sequence

MARPILGTNGGGLQVDVSLFSSTGLFLLSTIILSISLISMIIFACGHNSHHSPKKKKQRHHGGDGVDCGCLCGGGDGGGGGHDGGGGGHDGGGGGGGGCGGGGGGG

Homology

[Close]

BLAST of Lag0011710 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-08
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MARPILGTNGGGLQVDVSLFSSTGLFLLSTIILSISLISMIIFACGHNSHHSPKKKKQRH 60
          M RPI   +GGGL  DV+LFSS GL LL+TI++S+SL+SMIIFACG +S    K K++R+
Sbjct: 1  MGRPIPAADGGGLG-DVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSR---KNKRKRN 60

Query: 61 HGGDGVDCGCLCGGGDGGGGG 82
           GG G  CG   GGG GGGGG
Sbjct: 61 GGGGGAGCG---GGGCGGGGG 74

[Close]

BLAST of Lag0011710 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-05
Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MARPILGTNGGGLQVDVSLFSSTGLFLLSTIILSISLISMIIFACGHNSHHSPKKKKQRH 60
           M R I   +GGGL  DV+LFSS GL LL+T++LS+SL+SMIIFACG +S  +   K++R+
Sbjct: 1   MGRSIPAADGGGLG-DVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDN---KRKRN 60

Query: 61  HGGDGVDCGCLCGGGDGGGGGHDGGGGGHDGGGGGGGGCGGGGGG 106
            GG G   G  CGG  GGGGG  GGGGG  G  GGGGGCGGGGGG
Sbjct: 61  GGGCGGGGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGGGGGG 101

The following BLAST results are available for this feature:

BLAST of Lag0011710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603229.1	3.8e-08	59.26	hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6603228.1	5.1e-05	60.00	hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0011710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..106
None	No IPR available	PANTHER	PTHR35420	OS02G0198500 PROTEIN	coord: 1..105
None	No IPR available	PANTHER	PTHR35420:SF5	SUBFAMILY NOT NAMED	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011710.1	Lag0011710.1	mRNA