Lag0011663 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011663
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein FAR-RED ELONGATED HYPOCOTYL 3-like
Locationchr1: 30152473 .. 30152793 (+)
RNA-Seq ExpressionLag0011663
SyntenyLag0011663
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTCCACGCTGCAAGTTGGTCTGCTGAACGTGGTGGTATTATTCAATGGGAGGTGGGATGAAAACAATCGGTACAACGTGTTTAAATCCGATAGTGTGCTAGTACCGAAGGGATGCACAATACAAGAGTTCAATGAATGCATTCGGAGCAAGGTACTTCCGTCTGGCGAGCAAATGATCACTCGGTTAACCATGTACAAGAATGGTATCAACAAGTCTAATATAATCCGGATCACCGACGACAGGGATGTTATGTTTTTAGGGCCCTTTGGAATATCTTTTCGTTTAAGTGTTTTTCAAGAATGCATTTTCTTTTAA

mRNA sequence

ATGCACTCCACGCTGCAAGTTGGTCTGCTGAACGTGGTGGTATTATTCAATGGGAGGTGGGATGAAAACAATCGGTACAACGTGTTTAAATCCGATAGTGTGCTAGTACCGAAGGGATGCACAATACAAGAGTTCAATGAATGCATTCGGAGCAAGGTACTTCCGTCTGGCGAGCAAATGATCACTCGGTTAACCATGTACAAGAATGGTATCAACAAGTCTAATATAATCCGGATCACCGACGACAGGGATGTTATGTTTTTAGGGCCCTTTGGAATATCTTTTCGTTTAAGTGTTTTTCAAGAATGCATTTTCTTTTAA

Coding sequence (CDS)

ATGCACTCCACGCTGCAAGTTGGTCTGCTGAACGTGGTGGTATTATTCAATGGGAGGTGGGATGAAAACAATCGGTACAACGTGTTTAAATCCGATAGTGTGCTAGTACCGAAGGGATGCACAATACAAGAGTTCAATGAATGCATTCGGAGCAAGGTACTTCCGTCTGGCGAGCAAATGATCACTCGGTTAACCATGTACAAGAATGGTATCAACAAGTCTAATATAATCCGGATCACCGACGACAGGGATGTTATGTTTTTAGGGCCCTTTGGAATATCTTTTCGTTTAAGTGTTTTTCAAGAATGCATTTTCTTTTAA

Protein sequence

MHSTLQVGLLNVVVLFNGRWDENNRYNVFKSDSVLVPKGCTIQEFNECIRSKVLPSGEQMITRLTMYKNGINKSNIIRITDDRDVMFLGPFGISFRLSVFQECIFF
Homology
BLAST of Lag0011663 vs. NCBI nr
Match: XP_038887125.1 (uncharacterized protein LOC120077310 [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 8.2e-11
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 9  LLNVVVLFNGRWDENNRYNVFKSDSVLVPKGCTIQEFNECIRSKVLPSGEQMITRLTMYK 68
          L  V +LFNGRWDEN++Y+ F+     +P   + Q+F E I+ K+ PSGE  I+RL MY 
Sbjct: 3  LQRVKLLFNGRWDENSQYHDFRDCDAYIPSNSSFQQFVEYIQGKLFPSGELTISRLIMYW 62

Query: 69 NGINKSNIIRITDDRDVMFL 89
           G + SN+I I +D+ +++L
Sbjct: 63 IGSSNSNLISIVEDKYILWL 82

BLAST of Lag0011663 vs. NCBI nr
Match: KAA0054157.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 7  VGLLNVVVLFNGRWDENNRYNVFKSDSVLVPKGCTIQEFNECIRSKVLPSGEQMITRLTM 66
          +GL  V  +F+GRW E++RY  ++   V VP     QEF  CI+ ++ P+ E  ++RLT+
Sbjct: 1  MGLQRVKTVFDGRWIESSRYIDYRLLDVYVPVSSPFQEFVNCIQRRLFPNLEVSVSRLTV 60

Query: 67 YKNGINKSNIIRITDDRDV 86
          Y    N SN+IRI DD+DV
Sbjct: 61 YWTNCNNSNLIRIVDDKDV 79

BLAST of Lag0011663 vs. NCBI nr
Match: KAA0047392.1 (uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-09
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 7  VGLLNVVVLFNGRWDENNRYNVFKSDSVLVPKGCTIQEFNECIRSKVLPSGEQMITRLTM 66
          + L  V  +F+GRW E+ RY  ++   V VP   + QEF  CI+ ++ P+ E  ++RLT+
Sbjct: 1  MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60

Query: 67 YKNGINKSNIIRITDDRDVMFL 89
          Y    N SN+IRI DD+DV ++
Sbjct: 61 YWKDCNNSNLIRIVDDKDVSWI 82

BLAST of Lag0011663 vs. NCBI nr
Match: TYK14069.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-09
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 7  VGLLNVVVLFNGRWDENNRYNVFKSDSVLVPKGCTIQEFNECIRSKVLPSGEQMITRLTM 66
          + L  V  +F+GRW E+ RY  ++   V VP   + QEF  CI+ ++ P+ E  ++RLT+
Sbjct: 1  MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60

Query: 67 YKNGINKSNIIRITDDRDVMFL 89
          Y    N SN+IRI DD+DV ++
Sbjct: 61 YWKDCNNSNLIRIVDDKDVSWI 82

BLAST of Lag0011663 vs. NCBI nr
Match: KAA0039579.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-08
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 7  VGLLNVVVLFNGRWDENNRYNVFKSDSVLVPKGCTIQEFNECIRSKVLPSGEQMITRLTM 66
          + L  V  +F+GRW E+ RY  ++   V VP   + QEF  CI+ ++ P+ E  ++RLT+
Sbjct: 1  MALQQVKTVFHGRWIESCRYIDYRLLDVYVPISSSFQEFANCIQHRLFPNSEVFVSRLTL 60

Query: 67 YKNGINKSNIIRITDDRDVMFL 89
          Y    N S +IRI DD+DV ++
Sbjct: 61 YWKDCNNSKLIRIFDDKDVSWI 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887125.18.2e-1143.75uncharacterized protein LOC120077310 [Benincasa hispida][more]
KAA0054157.11.5e-0943.04protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa][more]
KAA0047392.13.4e-0940.24uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa][more]
TYK14069.13.4e-0940.24protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa][more]
KAA0039579.12.2e-0839.02protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 prot... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011663.1Lag0011663.1mRNA