Lag0011596 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTGGCAAAGTCCTGGTTTGGCATCACCGAGGAAAAGTTTCTGTAGTTTTTTTGCAGTTCCTGTCAATTTCTTTTATGGCGTTTGAAAATATGATGGAAAATTGGGAGAGATTCAGTCTCACCATTGAAGAGGACTCCACTGAAGTTGATGTGGATCGTCAGGCGGCACTGATTACTAGTCAATCTTTAGGCCTCATAGGCAAATTGCTTGCCCCTCGAATCATCTCGAGTGAGGTGATGCGACATACTTTCAAGTCGGCGTGGAACATCCCCAATGGCCTTATGGTGGGAAAATGGGATCAAATCTGTTTCTATTTACTTCAGGTCGGAAGCTGACCAATCTCGAGTGTTGTGTCAGGAGCCTTGGCTCTTTGACAAGTTCTTGCTCGTCCTTTCGAAACCTATCCCGATGGTGAAGCGTACTGCCATGGTTTTCCAATTTGCAACCTTTTGGGTGCATTTTTGTGATCTTCCAATGGACCTCTATAATCAGTCAATGGCGGAGAGATTGGGTAACGCGATTGGCCAGTTTCAAGAGTATGACAACGGGGGTCGAGGATATGGCTGGAAGGAGAGTCTTAGAGTTCGAGTCATCTTTACAGATATCATGCGCCCTTTTCGTCGAGGTATTAAGGTTCGACTCGATGATTCACTAGGAAGTGTTTGGTCTCCTATTAAGTATGAAAAGCTGCCGAAAATATGCTCGTATTGTGGCCGGATAAGACATGGGATGAGAGATTGCTCTTTCTCGTTGGTTGATGATGGTTCACCCTCACACCGGCAAGAGTACGGGATGTGGATGTCATTTTCTAGGCGTTCTTCACATGTTTTCCGTTTAGTAACCAATAGTTCTATGGGTTCTAATAGGATCATGTCGGAGGTTTCACCAAATCCGATTGGCAATCTGGTGAAGAGTCAAGAAAAAACGGCGGGACAGGAAGTGGGTCTGGATCATTAGCCACACTCACCGCCGATGACAGGTTCCGGTAGCCGGCTGATAAGACCAATTTGTTATACACTTGGATCTCCCAATTTGCTTATCTTAGTTGATTTCCTTGCGAAAAAATGCTTTAAAATGAGTATAATATGTCTATAGGTCCTCACCAGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACCATTCTACCCCTGGAGCCTCATTAG ATGTGTGGCAAAGTCCTGGTTTGGCATCACCGAGGAAAAGTTTCTGTAGTTTTTTTGCAGTTCCTGTCAATTTCTTTTATGGCGTTTGAAAATATGATGGAAAATTGGGAGAGATTCAGTCTCACCATTGAAGAGGACTCCACTGAAGTTGATGTGGATCGTCAGGCGGCACTGATTACTAGTCAATCTTTAGGCCTCATAGGCAAATTGCTTGCCCCTCGAATCATCTCGAGTGAGGTGATGCGACATACTTTCAAGTCGGCGTGGAACATCCCCAATGGCCTTATGGAGCCTTGGCTCTTTGACAAGTTCTTGCTCGTCCTTTCGAAACCTATCCCGATGGTGAAGCGTACTGCCATGGTTTTCCAATTTGCAACCTTTTGGGTGCATTTTTGTGATCTTCCAATGGACCTCTATAATCAGTCAATGGCGGAGAGATTGGGTAACGCGATTGGCCAGTTTCAAGAGTATGACAACGGGGGTCGAGGATATGGCTGGAAGGAGAGTCTTAGAGTTCGAGTCATCTTTACAGATATCATGCGCCCTTTTCGTCGAGGTATTAAGGTTCGACTCGATGATTCACTAGGAAGTGTTTGGTCTCCTATTAAGTATGAAAAGCTGCCGAAAATATGCTCGTATTGTGGCCGGATAAGACATGGGATGAGAGATTGCTCTTTCTCGTTGGTTGATGATGGTTCACCCTCACACCGGCAAGAGTACGGGATGTGGATGTCATTTTCTAGGCGTTCTTCACATGTTTTCCGTTTAGTAACCAATAGTTCTATGGGTTCTAATAGGATCATGTCGGAGGTTTCACCAAATCCGATTGGCAATCTGGTGAAGAGTCAAGAAAAAACGGCGGGACAGGAAGTGGGTCCTCACCAGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACCATTCTACCCCTGGAGCCTCATTAG ATGTGTGGCAAAGTCCTGGTTTGGCATCACCGAGGAAAAGTTTCTGTAGTTTTTTTGCAGTTCCTGTCAATTTCTTTTATGGCGTTTGAAAATATGATGGAAAATTGGGAGAGATTCAGTCTCACCATTGAAGAGGACTCCACTGAAGTTGATGTGGATCGTCAGGCGGCACTGATTACTAGTCAATCTTTAGGCCTCATAGGCAAATTGCTTGCCCCTCGAATCATCTCGAGTGAGGTGATGCGACATACTTTCAAGTCGGCGTGGAACATCCCCAATGGCCTTATGGAGCCTTGGCTCTTTGACAAGTTCTTGCTCGTCCTTTCGAAACCTATCCCGATGGTGAAGCGTACTGCCATGGTTTTCCAATTTGCAACCTTTTGGGTGCATTTTTGTGATCTTCCAATGGACCTCTATAATCAGTCAATGGCGGAGAGATTGGGTAACGCGATTGGCCAGTTTCAAGAGTATGACAACGGGGGTCGAGGATATGGCTGGAAGGAGAGTCTTAGAGTTCGAGTCATCTTTACAGATATCATGCGCCCTTTTCGTCGAGGTATTAAGGTTCGACTCGATGATTCACTAGGAAGTGTTTGGTCTCCTATTAAGTATGAAAAGCTGCCGAAAATATGCTCGTATTGTGGCCGGATAAGACATGGGATGAGAGATTGCTCTTTCTCGTTGGTTGATGATGGTTCACCCTCACACCGGCAAGAGTACGGGATGTGGATGTCATTTTCTAGGCGTTCTTCACATGTTTTCCGTTTAGTAACCAATAGTTCTATGGGTTCTAATAGGATCATGTCGGAGGTTTCACCAAATCCGATTGGCAATCTGGTGAAGAGTCAAGAAAAAACGGCGGGACAGGAAGTGGGTCCTCACCAGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACCATTCTACCCCTGGAGCCTCATTAG MCGKVLVWHHRGKVSVVFLQFLSISFMAFENMMENWERFSLTIEEDSTEVDVDRQAALITSQSLGLIGKLLAPRIISSEVMRHTFKSAWNIPNGLMEPWLFDKFLLVLSKPIPMVKRTAMVFQFATFWVHFCDLPMDLYNQSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRVIFTDIMRPFRRGIKVRLDDSLGSVWSPIKYEKLPKICSYCGRIRHGMRDCSFSLVDDGSPSHRQEYGMWMSFSRRSSHVFRLVTNSSMGSNRIMSEVSPNPIGNLVKSQEKTAGQEVGPHQSFGSNSGLKRAKPERKMTILPLEPH Homology
BLAST of Lag0011596 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia]) HSP 1 Score: 184.1 bits (466), Expect = 1.9e-42 Identity = 98/249 (39.36%), Postives = 132/249 (53.01%), Query Frame = 0
BLAST of Lag0011596 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia]) HSP 1 Score: 177.6 bits (449), Expect = 1.8e-40 Identity = 99/257 (38.52%), Postives = 141/257 (54.86%), Query Frame = 0
BLAST of Lag0011596 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia]) HSP 1 Score: 155.2 bits (391), Expect = 9.3e-34 Identity = 97/319 (30.41%), Postives = 145/319 (45.45%), Query Frame = 0
BLAST of Lag0011596 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis]) HSP 1 Score: 137.1 bits (344), Expect = 2.6e-28 Identity = 84/272 (30.88%), Postives = 131/272 (48.16%), Query Frame = 0
BLAST of Lag0011596 vs. NCBI nr
Match: XP_028124075.1 (uncharacterized protein LOC114321128 [Camellia sinensis]) HSP 1 Score: 136.7 bits (343), Expect = 3.4e-28 Identity = 83/272 (30.51%), Postives = 131/272 (48.16%), Query Frame = 0
BLAST of Lag0011596 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 9.1e-43 Identity = 98/249 (39.36%), Postives = 132/249 (53.01%), Query Frame = 0
BLAST of Lag0011596 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 8.5e-41 Identity = 99/257 (38.52%), Postives = 141/257 (54.86%), Query Frame = 0
BLAST of Lag0011596 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 4.5e-34 Identity = 97/319 (30.41%), Postives = 145/319 (45.45%), Query Frame = 0
BLAST of Lag0011596 vs. ExPASy TrEMBL
Match: A0A2N9FJK9 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14993 PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.0e-25 Identity = 80/255 (31.37%), Postives = 117/255 (45.88%), Query Frame = 0
BLAST of Lag0011596 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 6.5e-25 Identity = 79/245 (32.24%), Postives = 120/245 (48.98%), Query Frame = 0
BLAST of Lag0011596 vs. TAIR 10
Match: AT2G13450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02000.1); Has 247 Blast hits to 243 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 243; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 1.1e-05 Identity = 52/207 (25.12%), Postives = 86/207 (41.55%), Query Frame = 0
BLAST of Lag0011596 vs. TAIR 10
Match: AT4G02000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13450.1); Has 165 Blast hits to 161 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.1 bits (113), Expect = 1.5e-05 Identity = 48/183 (26.23%), Postives = 76/183 (41.53%), Query Frame = 0
BLAST of Lag0011596 vs. TAIR 10
Match: AT1G48095.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36960.1); Has 82 Blast hits to 82 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 2.0e-05 Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 0
BLAST of Lag0011596 vs. TAIR 10
Match: AT2G17920.1 (nucleic acid binding;zinc ion binding ) HSP 1 Score: 47.4 bits (111), Expect = 2.6e-05 Identity = 41/161 (25.47%), Postives = 67/161 (41.61%), Query Frame = 0
BLAST of Lag0011596 vs. TAIR 10
Match: AT2G41590.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25200.1); Has 221 Blast hits to 217 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 9.7e-05 Identity = 35/135 (25.93%), Postives = 56/135 (41.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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