Lag0011562 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011562
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr1: 27786643 .. 27786990 (+)
RNA-Seq ExpressionLag0011562
SyntenyLag0011562
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGACATTCTTGGTAAGTTCTTTGAGTTCGAGCTTTTGTGGGCTTTGATTCAGCGTATGCAACAATCCCCGTTTGCTTCTCTAGATCATGCGACGTTTCACATTTTGTTTAAGCGTTACGTGTCGACGCATTTGGTTACTGAAGCGATTGCTGCTTATGAGAGATTGCTGGAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTCATTGACGCACTTTGTGAGTATAGACATGTAGTTGAAGCTCAGGATTTGTGTTTTGGGAAGAGCAAGGGGTTGGATTGTGATGCGAGTACGAAGATTCATAACTTGATTCTTCGTGGTTGGCTTAAGATGGGGTGA

mRNA sequence

ATGCTCGACATTCTTGGTAAGTTCTTTGAGTTCGAGCTTTTGTGGGCTTTGATTCAGCGTATGCAACAATCCCCGTTTGCTTCTCTAGATCATGCGACGTTTCACATTTTGTTTAAGCGTTACGTGTCGACGCATTTGGTTACTGAAGCGATTGCTGCTTATGAGAGATTGCTGGAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTCATTGACGCACTTTGTGAGTATAGACATGTAGTTGAAGCTCAGGATTTGTGTTTTGGGAAGAGCAAGGGGTTGGATTGTGATGCGAGTACGAAGATTCATAACTTGATTCTTCGTGGTTGGCTTAAGATGGGGTGA

Coding sequence (CDS)

ATGCTCGACATTCTTGGTAAGTTCTTTGAGTTCGAGCTTTTGTGGGCTTTGATTCAGCGTATGCAACAATCCCCGTTTGCTTCTCTAGATCATGCGACGTTTCACATTTTGTTTAAGCGTTACGTGTCGACGCATTTGGTTACTGAAGCGATTGCTGCTTATGAGAGATTGCTGGAGTTTAAATTGAGGGATGAGACTTCGTTTTGTAATCTCATTGACGCACTTTGTGAGTATAGACATGTAGTTGAAGCTCAGGATTTGTGTTTTGGGAAGAGCAAGGGGTTGGATTGTGATGCGAGTACGAAGATTCATAACTTGATTCTTCGTGGTTGGCTTAAGATGGGGTGA

Protein sequence

MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEFKLRDETSFCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKMG
Homology
BLAST of Lag0011562 vs. NCBI nr
Match: XP_022991827.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima] >XP_022991828.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima] >XP_022991829.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           MLDILGKFFEF+L W LIQRM QSPFAS DHATF I+FKRY S HLV+EAIAAYERL EF
Sbjct: 115 MLDILGKFFEFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREF 174

Query: 61  KLRDETSFCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKMG 116
           KLRDETSFCNLIDALCEYRHVVEAQDLCFGK++ L+CDASTKIHNLILRGWLKMG
Sbjct: 175 KLRDETSFCNLIDALCEYRHVVEAQDLCFGKNRKLNCDASTKIHNLILRGWLKMG 229

BLAST of Lag0011562 vs. NCBI nr
Match: XP_022148858.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica charantia])

HSP 1 Score: 208.4 bits (529), Expect = 3.3e-50
Identity = 99/115 (86.09%), Postives = 105/115 (91.30%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           MLDILGKFFEF++ W L+QRMQQS FAS DHATF ILFKRY S HLVTEAIAAYER  EF
Sbjct: 98  MLDILGKFFEFDISWVLVQRMQQSAFASPDHATFRILFKRYASAHLVTEAIAAYERSREF 157

Query: 61  KLRDETSFCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKMG 116
           KLRDETSFCNLIDALCEYRHVVEAQDLCFGK+K +DC+ASTKIHNLILRGWLKMG
Sbjct: 158 KLRDETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMG 212

BLAST of Lag0011562 vs. NCBI nr
Match: XP_022953157.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953158.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953159.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata])

HSP 1 Score: 208.4 bits (529), Expect = 3.3e-50
Identity = 99/115 (86.09%), Postives = 106/115 (92.17%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           MLDILGKFFEF+L W LIQRM QSPFAS DHATF I+FKRY S HLV+EAIAAYERL EF
Sbjct: 115 MLDILGKFFEFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREF 174

Query: 61  KLRDETSFCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKMG 116
           KLRDETSFCNLID+LCEYRHVVEAQDLCFGK++ L+CDASTKIHNLILRGWLKMG
Sbjct: 175 KLRDETSFCNLIDSLCEYRHVVEAQDLCFGKNRKLNCDASTKIHNLILRGWLKMG 229

BLAST of Lag0011562 vs. NCBI nr
Match: XP_023547614.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023547616.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 9.7e-50
Identity = 99/115 (86.09%), Postives = 105/115 (91.30%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           MLDILGKFFEF+L W LIQRM QSPFAS DHATF I+FKRY S HLV+EAIAAYERL EF
Sbjct: 115 MLDILGKFFEFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREF 174

Query: 61  KLRDETSFCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKMG 116
           KLRDETSFCNLIDALCEYRHVVEAQDLCFGK++ L+C ASTKIHNLILRGWLKMG
Sbjct: 175 KLRDETSFCNLIDALCEYRHVVEAQDLCFGKNRKLNCGASTKIHNLILRGWLKMG 229

BLAST of Lag0011562 vs. NCBI nr
Match: KAG7014158.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 99/115 (86.09%), Postives = 105/115 (91.30%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           MLDILGKFFEF+L W LIQRM QSPFAS DHATF I+FKRY S HLV+EAIAAYERL EF
Sbjct: 98  MLDILGKFFEFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAHLVSEAIAAYERLREF 157

Query: 61  KLRDETSFCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKMG 116
           KLRDETSFCNLIDALCEYRHVVEAQDLCFGK++ L+C ASTKIHNLILRGWLKMG
Sbjct: 158 KLRDETSFCNLIDALCEYRHVVEAQDLCFGKNRMLNCGASTKIHNLILRGWLKMG 212

BLAST of Lag0011562 vs. ExPASy Swiss-Prot
Match: Q9M8M3 (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80550 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-34
Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           ++DILGK+FEFE+ WALI RM  +  +  +H TF I+FKRYV+ HLV EAI AY++L +F
Sbjct: 87  VIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDF 146

Query: 61  KLRDETSFCNLIDALCEYRHVVEAQDLCFGKS---KGLDCDASTKIHNLILRGWLKMG 116
            LRDETSF NL+DALCE++HVVEA++LCFGK+    G    ++TKIHNLILRGW K+G
Sbjct: 147 NLRDETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSV-SNTKIHNLILRGWSKLG 203

BLAST of Lag0011562 vs. ExPASy Swiss-Prot
Match: Q9SSR6 (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-11
Identity = 35/115 (30.43%), Postives = 66/115 (57.39%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           +++ILG   +F LLW  +   ++  +  +    F I+F+ Y   +L +EA  A+ R++EF
Sbjct: 108 LVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEF 167

Query: 61  KLRD-ETSFCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKM 115
            ++        L+ +LC+ +HV  AQ+  FGK+KG     S K +++++RGW ++
Sbjct: 168 GIKPCVDDLDQLLHSLCDKKHVNHAQEF-FGKAKGFGIVPSAKTYSILVRGWARI 221

BLAST of Lag0011562 vs. ExPASy Swiss-Prot
Match: Q9LIL5 (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana OX=3702 GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-11
Identity = 39/116 (33.62%), Postives = 60/116 (51.72%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           +LD+LGK   FE    +   M +     ++  T+ +L  RY + H V EA+  +ER  EF
Sbjct: 149 ILDVLGKMRRFEEFHQVFDEMSKRD-GFVNEKTYEVLLNRYAAAHKVDEAVGVFERRKEF 208

Query: 61  KLRDE-TSFCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGWLKMG 116
            + D+  +F  L+  LC Y+HV  A+ L   + +   CD   K  N+IL GW  +G
Sbjct: 209 GIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD--IKAMNMILNGWCVLG 261

BLAST of Lag0011562 vs. ExPASy Swiss-Prot
Match: Q9C9A2 (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 36/112 (32.14%), Postives = 64/112 (57.14%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           +++ LGK  +F+L+W+L+  M+     S +  TF ++ +RY     V EAI A+ ++ EF
Sbjct: 134 LIESLGKIKQFKLIWSLVDDMKAKKLLSKE--TFALISRRYARARKVKEAIGAFHKMEEF 193

Query: 61  KLRDETS-FCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGW 112
             + E+S F  ++D L + R+V +AQ + F K K    +   K + ++L GW
Sbjct: 194 GFKMESSDFNRMLDTLSKSRNVGDAQKV-FDKMKKKRFEPDIKSYTILLEGW 242

BLAST of Lag0011562 vs. ExPASy Swiss-Prot
Match: Q9LFQ4 (Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g15010 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-09
Identity = 37/112 (33.04%), Postives = 58/112 (51.79%), Query Frame = 0

Query: 1   MLDILGKFFEFELLWALIQRMQQSPFASLDHATFHILFKRYVSTHLVTEAIAAYERLLEF 60
           M+ ILGK  +F+  W LI  M++   + ++  T  I+ ++Y + H V +AI  +     F
Sbjct: 167 MISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRF 226

Query: 61  KLR-DETSFCNLIDALCEYRHVVEAQDLCFGKSKGLDCDASTKIHNLILRGW 112
           KL      F +L+ ALC Y++V +A  L F        DA  K  N++L GW
Sbjct: 227 KLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDA--KSFNIVLNGW 276

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022991827.11.5e-5086.96pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ... [more]
XP_022148858.13.3e-5086.09pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica ... [more]
XP_022953157.13.3e-5086.09pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ... [more]
XP_023547614.19.7e-5086.09pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ... [more]
KAG7014158.11.3e-4986.09Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
Q9M8M31.2e-3461.02Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidop... [more]
Q9SSR61.4e-1130.43Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidop... [more]
Q9LIL53.2e-1133.62Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis th... [more]
Q9C9A21.3e-0932.14Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidop... [more]
Q9LFQ43.9e-0933.04Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidop... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..115
e-value: 1.8E-7
score: 32.7
NoneNo IPR availablePANTHERPTHR46128MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1coord: 1..115
NoneNo IPR availablePANTHERPTHR46128:SF230BNAC06G40430D PROTEINcoord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011562.1Lag0011562.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding