Lag0011494 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011494
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr1: 26194062 .. 26194364 (+)
RNA-Seq ExpressionLag0011494
SyntenyLag0011494
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTGCAATGATCGACAAAAGGTGGCTTGTGCTGCTTGTATGCTAAAGAAAGGAGTAAACAAATGGTGGAACTTAACAAGAAGGACGTGGAATGTGCCTAATAACCCATTGAGTTGGGAAAGATTCAATGAGCTTTTCTTCGAGAAGTTCTTTCCCCCTACTGTTAGACAAGATAAGGAAGTTGAGTTCATTAAGTTGGAGCAGGGGAAGTTGAGCCTATTGGAGTATGAAAGAAAGTTTGATGTACTTTCTCAGTATGCTCCTCACTTGGTGGACACTGATTGGAGGAAAACAAGATAA

mRNA sequence

ATGGACTGCAATGATCGACAAAAGGTGGCTTGTGCTGCTTGTATGCTAAAGAAAGGAGTAAACAAATGGTGGAACTTAACAAGAAGGACGTGGAATGTGCCTAATAACCCATTGAGTTGGGAAAGATTCAATGAGCTTTTCTTCGAGAAGTTCTTTCCCCCTACTGTTAGACAAGATAAGGAAGTTGAGTTCATTAAGTTGGAGCAGGGGAAGTTGAGCCTATTGGAGTATGAAAGAAAGTTTGATGTACTTTCTCAGTATGCTCCTCACTTGGTGGACACTGATTGGAGGAAAACAAGATAA

Coding sequence (CDS)

ATGGACTGCAATGATCGACAAAAGGTGGCTTGTGCTGCTTGTATGCTAAAGAAAGGAGTAAACAAATGGTGGAACTTAACAAGAAGGACGTGGAATGTGCCTAATAACCCATTGAGTTGGGAAAGATTCAATGAGCTTTTCTTCGAGAAGTTCTTTCCCCCTACTGTTAGACAAGATAAGGAAGTTGAGTTCATTAAGTTGGAGCAGGGGAAGTTGAGCCTATTGGAGTATGAAAGAAAGTTTGATGTACTTTCTCAGTATGCTCCTCACTTGGTGGACACTGATTGGAGGAAAACAAGATAA

Protein sequence

MDCNDRQKVACAACMLKKGVNKWWNLTRRTWNVPNNPLSWERFNELFFEKFFPPTVRQDKEVEFIKLEQGKLSLLEYERKFDVLSQYAPHLVDTDWRKTR
Homology
BLAST of Lag0011494 vs. NCBI nr
Match: XP_022155935.1 (uncharacterized protein LOC111022935 [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-32
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 0

Query: 9   VACAACMLKKGVNKWWNLTRRTWNVPNNPLSWERFNELFFEKFFPPTVRQDKEVEFIKLE 68
           VACA  MLK GVNKWWN+TR+TWN+  NP+  +RF ELF+ KFFP T RQ+KE +FIKLE
Sbjct: 57  VACATYMLKIGVNKWWNMTRKTWNIAENPMGSDRFKELFYGKFFPLTARQNKEADFIKLE 116

Query: 69  QGKLSLLEYERKFDVLSQYAPHLVDTDWRKTR 101
           QGKLSL+EYE+KF+ LS YAPHLVDTDWRK R
Sbjct: 117 QGKLSLIEYEKKFEELSHYAPHLVDTDWRKAR 148

BLAST of Lag0011494 vs. NCBI nr
Match: XP_015896950.1 (uncharacterized protein LOC107430602 [Ziziphus jujuba] >XP_015896951.1 uncharacterized protein LOC107430602 [Ziziphus jujuba])

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-24
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 0

Query: 2   DCNDRQKVACAACMLKKGVNKWWNLTRRTWNVPNNPLSWERFNELFFEKFFPPTVRQDKE 61
           +C++  KV CA  ML+K    WW  TRRT NV  NP+ WE+F  LF + +FP T+R DK 
Sbjct: 84  ECSEEDKVHCATFMLRKDAWLWWLFTRRTVNVHENPIGWEQFKNLFLDSYFPETLRNDKR 143

Query: 62  VEFIKLEQGKLSLLEYERKFDVLSQYAPHLVDTDWRK 99
            EFI+LEQG L+L+EYER+F+ LS++APHLVDTD +K
Sbjct: 144 REFIQLEQGDLTLVEYEREFEQLSRFAPHLVDTDEKK 180

BLAST of Lag0011494 vs. NCBI nr
Match: KAF3440753.1 (hypothetical protein FNV43_RR19039 [Rhamnella rubrinervis])

HSP 1 Score: 117.1 bits (292), Expect = 8.8e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query: 1   MDCNDRQKVACAACMLKKGVNKWWNLTRRTWNVPNNPLSWERFNELFFEKFFPPTVRQDK 60
           ++C + QKV CA+ MLKK  + WW++ +R +N+  +P+ W +F ELF EK+F    + +K
Sbjct: 86  IECTESQKVVCASFMLKKSASHWWDMVKRAYNLEESPMLWAQFKELFLEKYFLIVKQDEK 145

Query: 61  EVEFIKLEQGKLSLLEYERKFDVLSQYAPHLVDTDWRKTR 101
           + EF++L  G LSLLEYERKFD LS+YA HLVDT  RK R
Sbjct: 146 KAEFLRLTHGNLSLLEYERKFDKLSRYATHLVDTKERKAR 185

BLAST of Lag0011494 vs. NCBI nr
Match: KAF3445903.1 (hypothetical protein FNV43_RR11080 [Rhamnella rubrinervis])

HSP 1 Score: 114.0 bits (284), Expect = 7.5e-22
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 0

Query: 1   MDCNDRQKVACAACMLKKGVNKWWNLTRRTWNVPNNPLSWERFNELFFEKFFPPTVRQDK 60
           +DC + QKV CA+ MLKKG + WW++ ++T+N+  + + W +F ELF EK+FP     +K
Sbjct: 124 VDCIESQKVVCASFMLKKGASHWWDMVKQTYNLEESSMLWIQFKELFLEKYFPIIKWDEK 183

Query: 61  EVEFIKLEQGKLSLLEYERKFDVLSQYAPHLVDTD 96
             EF++L+QG LSLLEYERKFD LS+Y PHLV+ +
Sbjct: 184 GAEFLRLKQGNLSLLEYERKFDELSRYVPHLVNNE 218

BLAST of Lag0011494 vs. NCBI nr
Match: XP_015900803.1 (uncharacterized protein LOC107433919 [Ziziphus jujuba])

HSP 1 Score: 107.8 bits (268), Expect = 5.3e-20
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 0

Query: 1   MDCNDRQKVACAACMLKKGVNKWWNLTRRTWNVPNNPLSWERFNELFFEKFFPPTVRQDK 60
           M+C D +KV CA  MLK+G + WW +T R W+V  NP++W              T R +K
Sbjct: 8   MECTDARKVTCAVYMLKQGASHWWEMTSRAWDVERNPITW--------------TWRDNK 67

Query: 61  EVEFIKLEQGKLSLLEYERKFDVLSQYAPHLVDTDWRKTR 101
             EFI+L+QGK++L +YERKFD LS+YAPHLVDTD RK +
Sbjct: 68  IAEFIELKQGKMTLAQYERKFDELSRYAPHLVDTDERKAQ 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155935.12.1e-3271.74uncharacterized protein LOC111022935 [Momordica charantia][more]
XP_015896950.16.1e-2455.67uncharacterized protein LOC107430602 [Ziziphus jujuba] >XP_015896951.1 uncharact... [more]
KAF3440753.18.8e-2351.00hypothetical protein FNV43_RR19039 [Rhamnella rubrinervis][more]
KAF3445903.17.5e-2251.58hypothetical protein FNV43_RR11080 [Rhamnella rubrinervis][more]
XP_015900803.15.3e-2050.00uncharacterized protein LOC107433919 [Ziziphus jujuba][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 16..96
e-value: 1.4E-10
score: 41.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011494.1Lag0011494.1mRNA