Lag0011461 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011461
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr1: 25451035 .. 25451559 (+)
RNA-Seq ExpressionLag0011461
SyntenyLag0011461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACAGTAAAACCGTTGGGCAAGACCCATGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGAGGGAAGTCCCCGATTCGGTTCGCTTCCTAGAATCTCGTCTTGAAGAGATTGCGACGAGGACAGATAAGATCGATGCGGTAGCTGGTCGCGTGGATGGAATTCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACAGAACTGTGAAACCTAGTAGCTTCGAGCGTGGGGACAGCTCGACGGGCTCTGTTGCCCAAATGGAGGAGCGTGTTGATGGTCTAGACAGCTCCCAGAAAGCAATAGTTCAGATGGTCACAGAACTGTCTGAAGATGTGAAAGCGGCCCTCGACGTCGTCAGAGCCGAAGTGGCGGATTTAAGCGCCAGACTAAACCTCACCATGAGAGCGGTGGGAAACCAAACCCCGACAGGGGGTGCGGTCCAATTAAACAAAGTAAAAGTCCCTGAGCCGAAACCCTTCTGTGGGGTTCGATGCTCTACCTGA

mRNA sequence

ATGTCGACAGTAAAACCGTTGGGCAAGACCCATGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGAGGGAAGTCCCCGATTCGGTTCGCTTCCTAGAATCTCGTCTTGAAGAGATTGCGACGAGGACAGATAAGATCGATGCGGTAGCTGGTCGCGTGGATGGAATTCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACAGAACTGTGAAACCTAGTAGCTTCGAGCGTGGGGACAGCTCGACGGGCTCTGTTGCCCAAATGGAGGAGCGTGTTGATGGTCTAGACAGCTCCCAGAAAGCAATAGTTCAGATGGTCACAGAACTGTCTGAAGATGTGAAAGCGGCCCTCGACGTCGTCAGAGCCGAAGTGGCGGATTTAAGCGCCAGACTAAACCTCACCATGAGAGCGGTGGGAAACCAAACCCCGACAGGGGGTGCGGTCCAATTAAACAAAGTAAAAGTCCCTGAGCCGAAACCCTTCTGTGGGGTTCGATGCTCTACCTGA

Coding sequence (CDS)

ATGTCGACAGTAAAACCGTTGGGCAAGACCCATGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGAGGGAAGTCCCCGATTCGGTTCGCTTCCTAGAATCTCGTCTTGAAGAGATTGCGACGAGGACAGATAAGATCGATGCGGTAGCTGGTCGCGTGGATGGAATTCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACAGAACTGTGAAACCTAGTAGCTTCGAGCGTGGGGACAGCTCGACGGGCTCTGTTGCCCAAATGGAGGAGCGTGTTGATGGTCTAGACAGCTCCCAGAAAGCAATAGTTCAGATGGTCACAGAACTGTCTGAAGATGTGAAAGCGGCCCTCGACGTCGTCAGAGCCGAAGTGGCGGATTTAAGCGCCAGACTAAACCTCACCATGAGAGCGGTGGGAAACCAAACCCCGACAGGGGGTGCGGTCCAATTAAACAAAGTAAAAGTCCCTGAGCCGAAACCCTTCTGTGGGGTTCGATGCTCTACCTGA

Protein sequence

MSTVKPLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGIPIQELIMRVENLENRTVKPSSFERGDSSTGSVAQMEERVDGLDSSQKAIVQMVTELSEDVKAALDVVRAEVADLSARLNLTMRAVGNQTPTGGAVQLNKVKVPEPKPFCGVRCST
Homology
[Close]
BLAST of Lag0011461 vs. NCBI nr
Match: KAA0053339.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 214.2 bits (544), Expect = 9.2e-52
Identity = 112/176 (63.64%), Postives = 142/176 (80.68%), Query Frame = 0 

Query: 1   MSTVKPLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGIP 60
           MS+  P GK   +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQELIMRVENLE-----NRTVKPSSFERGDSSTGSVAQMEERVDGLDSSQKAIVQMVTEL 120
           IQEL+ RV+ LE      RTV   ++ERGDSSTGSVA +EERV  LDSSQK +++M+  +
Sbjct: 61  IQELVTRVDALETTVNIGRTV---NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGM 120

Query: 121 SEDVKAALDVVRAEVADLSARLNLTMRAVGNQTPTGGAVQLNKVKVPEPKPFCGVR 172
           SED +A LDVVR E+AD++ARL+LTMRA+ NQ PTGGA+ +++VK+PEPKPFCG R
Sbjct: 121 SEDFRATLDVVRNEIADVNARLSLTMRAMANQAPTGGAIPVSRVKIPEPKPFCGAR 173

[Close]
BLAST of Lag0011461 vs. NCBI nr
Match: TYK03099.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-51
Identity = 112/176 (63.64%), Postives = 142/176 (80.68%), Query Frame = 0 

Query: 1   MSTVKPLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGIP 60
           MS+  PLGK   +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQELIMRVENLE-----NRTVKPSSFERGDSSTGSVAQMEERVDGLDSSQKAIVQMVTEL 120
           IQEL+ RV+ LE      RTV   ++ERGDSSTGSVA +EERV  LDSSQK +++M+  +
Sbjct: 61  IQELMTRVDALETTVNIGRTV---NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGM 120

Query: 121 SEDVKAALDVVRAEVADLSARLNLTMRAVGNQTPTGGAVQLNKVKVPEPKPFCGVR 172
           SED +A LDVVR E+AD++ARL+LTMRA+ NQ P GGA+ +++VK+PEPKPFCG R
Sbjct: 121 SEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGAR 173

[Close]
BLAST of Lag0011461 vs. NCBI nr
Match: KAA0051251.1 (uncharacterized protein E6C27_scaffold2143G00070 [Cucumis melo var. makuwa] >TYK28094.1 uncharacterized protein E5676_scaffold1510G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-51
Identity = 109/171 (63.74%), Postives = 136/171 (79.53%), Query Frame = 0 

Query: 1   MSTVKPLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGIP 60
           MS+  PLGK   +RLVE+EEQMLYL EVP S+RFLESRLEEIA + D IDAVAGRV G+ 
Sbjct: 1   MSSANPLGKAQRDRLVELEEQMLYLVEVPISIRFLESRLEEIAEKIDMIDAVAGRVKGLL 60

Query: 61  IQELIMRVENLENRTVKPSSFERGDSSTGSVAQMEERVDGLDSSQKAIVQMVTELSEDVK 120
           IQEL+ RV+ LE    +  S ERGDSSTGSVA +EERV  LDSSQK +++M+  +SE+ +
Sbjct: 61  IQELLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSENFR 120

Query: 121 AALDVVRAEVADLSARLNLTMRAVGNQTPTGGAVQLNKVKVPEPKPFCGVR 172
           A LDVVR E+AD++ARL+LTMRA+ NQ P GGA+ +++VK+PEPKPFCG R
Sbjct: 121 ATLDVVRNEIADVNARLSLTMRAMANQAPAGGAISVSRVKIPEPKPFCGAR 171

[Close]
BLAST of Lag0011461 vs. NCBI nr
Match: KAA0037573.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 4.6e-51
Identity = 112/176 (63.64%), Postives = 141/176 (80.11%), Query Frame = 0 

Query: 1   MSTVKPLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGIP 60
           MS+  PLGK   +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IQELIMRVENLE-----NRTVKPSSFERGDSSTGSVAQMEERVDGLDSSQKAIVQMVTEL 120
           IQEL+ RV+ LE      RTV   ++ERGDSSTGSVA +EERV  LDSSQK  ++M+  +
Sbjct: 61  IQELMTRVDALETTVNIGRTV---NYERGDSSTGSVAHIEERVQELDSSQKTRLEMINGM 120

Query: 121 SEDVKAALDVVRAEVADLSARLNLTMRAVGNQTPTGGAVQLNKVKVPEPKPFCGVR 172
           SED +A LDVVR E+AD++ARL+LTMRA+ NQ P GGA+ +++VK+PEPKPFCG R
Sbjct: 121 SEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGAR 173

[Close]
BLAST of Lag0011461 vs. NCBI nr
Match: KAA0035532.1 (uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 6.0e-51
Identity = 111/176 (63.07%), Postives = 141/176 (80.11%), Query Frame = 0 

Query: 1   MSTVKPLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGIP 60
           MS+  P GK   +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNMIDAVAGRVEGFP 60

Query: 61  IQELIMRVENLE-----NRTVKPSSFERGDSSTGSVAQMEERVDGLDSSQKAIVQMVTEL 120
           IQEL+ RV+ LE      RTV   ++ERGDSSTGSVA +EERV  LDSSQK +++M+  +
Sbjct: 61  IQELMTRVDALETTVNIGRTV---NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGM 120

Query: 121 SEDVKAALDVVRAEVADLSARLNLTMRAVGNQTPTGGAVQLNKVKVPEPKPFCGVR 172
           SED +A LDVVR E+AD++ARL+LTMRA+ NQ P GGA+ +++VK+PEPKPFCG R
Sbjct: 121 SEDFRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGAR 173

The following BLAST results are available for this feature:
BLAST of Lag0011461 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053339.19.2e-5263.64reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03099.11.2e-5163.64reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0051251.12.7e-5163.74uncharacterized protein E6C27_scaffold2143G00070 [Cucumis melo var. makuwa] >TYK... [more]
KAA0037573.14.6e-5163.64reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0035532.16.0e-5163.07uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa][more]
BLAST of Lag0011461 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011461.1Lag0011461.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0008270 zinc ion binding