Lag0011437 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011437
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr1: 24745056 .. 24746104 (-)
RNA-Seq ExpressionLag0011437
SyntenyLag0011437
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACTAGTAATAAATAGTATATACTAACTTCAGTAAAATAACCCTCATGTTGATGCAGATGGCACCGTCTACTTCGAAAGCCCCTAACCATATCTGGACACCAATGGAAGATGAAGTTTTGGTCTAGTGTCTGCTACATTTGATTCAAGCAGGTGGATGGCGGGCTGACAATGGGACCTTCAAACCGGGGAACTTGCAACAAGTACAGAAGTTGATGAAAGAGAAATTGTCAGGATGTGACATACAAGTAACGTCGAACTTGGAGTCTAGAGTGAGGATCCTGAAAAGGCAATACAGTGCCCTCGTCGAAATGATGGGTCCCACTTGCAATGGGTTTGGCTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTTAGGGTAACAATTCAAACTTAATCCATGTACAATTCATGAATAAAATGTTATACGATCATGTATGTTAATTGTGTTAGCATGTTGAATACAGGGACACCCAGCTGCTCGTGGTCTGAGGAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGAGAAGGATAGGGCCAATGGAGAAGGTGCTTCGACTCCGAACGAAATGGCCACTGACTTGGATGATGACGTGAACACAGATGTTGAAGATTGTTATGTCCCTTCCCTCCTATAGTTGAACCTGTGGTAGGTGAAGAATTTTATACCACCCGTCCGAGCAAGATTGACACGCCAGGATCATCAAGGGGAAGTTAGAGGAGGCGGACAGTACCAACAGACGCAGTCAATACATTTTGCACGGAGATGCGTTATGTGTCCACGCAAATCGAAAAGATCGCACTCTGGCCTCAACATAAGGATGAAATAGAGTCAGCTTGACGTAAACAACTGTATGGGGAACTACAGTCTATCCCGGGAATGGACATGGACGACTGTTTGCTTGTGGCCAAGACTCTGTTGGCTGATAACAAGAAATTTCACTCATTCCTTGACTACCCTACTGAATGGAAGTATAAATGTTGCATGCGTATCTTGGGAAGGCAGCCATGA

mRNA sequence

ATGTCAACTAGTGGATGGCGGGCTGACAATGGGACCTTCAAACCGGGGAACTTGCAACAAGTACAGAAGTTGATGAAAGAGAAATTGTCAGGATGTGACATACAAGTAACGTCGAACTTGGAGTCTAGAGTGAGGATCCTGAAAAGGCAATACAGTGCCCTCGTCGAAATGATGGGTCCCACTTGCAATGGGTTTGGCTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTTAGGGGACACCCAGCTGCTCGTGGTCTGAGGAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGAGAAGGATAGGGCCAATGGAGAAGGTGCTTCGACTCCGAACGAAATGGCCACTGACTTGGATGATGACGTGAACACAGATGTTGAAGATTGTTATTCTATCCCGGGAATGGACATGGACGACTGTTTGCTTGTGGCCAAGACTCTGTTGGCTGATAACAAGAAATTTCACTCATTCCTTGACTACCCTACTGAATGGAAGTATAAATGTTGCATGCGTATCTTGGGAAGGCAGCCATGA

Coding sequence (CDS)

ATGTCAACTAGTGGATGGCGGGCTGACAATGGGACCTTCAAACCGGGGAACTTGCAACAAGTACAGAAGTTGATGAAAGAGAAATTGTCAGGATGTGACATACAAGTAACGTCGAACTTGGAGTCTAGAGTGAGGATCCTGAAAAGGCAATACAGTGCCCTCGTCGAAATGATGGGTCCCACTTGCAATGGGTTTGGCTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTTAGGGGACACCCAGCTGCTCGTGGTCTGAGGAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGAGAAGGATAGGGCCAATGGAGAAGGTGCTTCGACTCCGAACGAAATGGCCACTGACTTGGATGATGACGTGAACACAGATGTTGAAGATTGTTATTCTATCCCGGGAATGGACATGGACGACTGTTTGCTTGTGGCCAAGACTCTGTTGGCTGATAACAAGAAATTTCACTCATTCCTTGACTACCCTACTGAATGGAAGTATAAATGTTGCATGCGTATCTTGGGAAGGCAGCCATGA

Protein sequence

MSTSGWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVFEKDRANGEGASTPNEMATDLDDDVNTDVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGRQP
Homology
BLAST of Lag0011437 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 9.6e-47
Identity = 116/239 (48.54%), Postives = 138/239 (57.74%), Query Frame = 0

Query: 5   GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNG 64
           GWRADNGTFK G L QVQKLMKEK+ G +IQVT NL+SRV+ILK+QY A+ EMMGP C+G
Sbjct: 32  GWRADNGTFKLGYLVQVQKLMKEKILGSNIQVTPNLKSRVKILKKQYIAIAEMMGPACSG 91

Query: 65  FGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVFEK-DRANGEG----- 124
           FGWN+ERKCIEAEKSVFDDWV+    AR +        DD+ I  E  D  N  G     
Sbjct: 92  FGWNEERKCIEAEKSVFDDWVK---TARDIEE------DDMDINLEDFDIPNPHGLEPPS 151

Query: 125 ----ASTPNEMATDL-------------DDDVNT-----------------------DVE 184
                STP  MA D               D ++T                       ++E
Sbjct: 152 GEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE 211

Query: 185 ---------DCYSIPGMDMDDCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGRQP 189
                    D  +IPGMD+DDCL+VA++LL D    H+FLDYP EWKY+ CMRILGRQP
Sbjct: 212 SSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 261

BLAST of Lag0011437 vs. NCBI nr
Match: XP_031741735.1 (uncharacterized protein At2g29880-like [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 9.0e-45
Identity = 95/145 (65.52%), Postives = 115/145 (79.31%), Query Frame = 0

Query: 5   GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNG 64
           GWRA NGTFKPG L QVQKLMKEK+ G +IQVT NLE RV+ILK+QY+A+VEMMGP+C+ 
Sbjct: 52  GWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSR 111

Query: 65  FGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVFEKDRANGEGASTPNE 124
           FGWN++RKCIEAEK VFDD V+GHP ARGL NKPFPYF DL IVF +DRA G    TP E
Sbjct: 112 FGWNEKRKCIEAEKFVFDDLVKGHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTPVE 171

Query: 125 MAT----DL-DDDVNTDVEDCYSIP 145
           M +    D+ +DD++ ++ED + IP
Sbjct: 172 MCSHNTRDIEEDDMDINLED-FDIP 195

BLAST of Lag0011437 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-43
Identity = 102/210 (48.57%), Postives = 122/210 (58.10%), Query Frame = 0

Query: 6   WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGF 65
           WR DNGTFKPG L QVQKLMKEK+   +IQVT NLES V+ILK+QY+ + EMMGP C+GF
Sbjct: 119 WRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGF 178

Query: 66  GWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVFEKDRANGEGASTPNEM 125
            WN ERKCIEAEKSV +DWV+GH  AR L NKPFPYF DL IVF +DRA G    TP EM
Sbjct: 179 SWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEM 238

Query: 126 ATDL-----DDDVNTDVEDCYSIP------------------------------------ 175
            +       +DD+  ++ED + IP                                    
Sbjct: 239 GSQTARDTEEDDMIINLED-FDIPNPHGLEPPSGEDMPSTPTSMAHDAGSFRPSKKRRSY 298

BLAST of Lag0011437 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-43
Identity = 102/210 (48.57%), Postives = 122/210 (58.10%), Query Frame = 0

Query: 6   WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGF 65
           WR DNGTFKPG L QVQKLMKEK+   +IQVT NLES V+ILK+QY+ + EMMGP C+GF
Sbjct: 119 WRVDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGF 178

Query: 66  GWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVFEKDRANGEGASTPNEM 125
            WN ERKCIEAEKSV +DWV+GH  AR L NKPFPYF DL IVF +DRA G    TP EM
Sbjct: 179 SWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEM 238

Query: 126 ATDL-----DDDVNTDVEDCYSIP------------------------------------ 175
            +       +DD+  ++ED + IP                                    
Sbjct: 239 GSQTARDTEEDDMIINLED-FDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSY 298

BLAST of Lag0011437 vs. NCBI nr
Match: TYK06362.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 8.4e-43
Identity = 97/202 (48.02%), Postives = 112/202 (55.45%), Query Frame = 0

Query: 5   GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNG 64
           GWRADNGTFKPG L                              +QY+A+ EMMGP C+G
Sbjct: 285 GWRADNGTFKPGYL------------------------------KQYTAIAEMMGPACSG 344

Query: 65  FGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVFEKDRANG-------- 124
           FGWN+ERKCIEAEKSVFDDWV+GHP ARGL NKPFPYF DL +VF +DRA G        
Sbjct: 345 FGWNEERKCIEAEKSVFDDWVKGHPKARGLLNKPFPYFYDLEVVFGRDRATGGRYFDIPN 404

Query: 125 ----------EGASTPNEMATDLDDDVNTDVEDCYSIPGMDMDDCLLVAKTLLADNKKFH 184
                     +  STP  MA D      +     YS    D+ D     ++LL D    H
Sbjct: 405 PHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYS---GDLMDTFRATESLLLDPTMLH 453

Query: 185 SFLDYPTEWKYKCCMRILGRQP 189
           +FLDYP EWKY+ CMRILGRQP
Sbjct: 465 AFLDYPAEWKYRKCMRILGRQP 453

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050106.19.6e-4748.54retrotransposon protein [Cucumis melo var. makuwa][more]
XP_031741735.19.0e-4565.52uncharacterized protein At2g29880-like [Cucumis sativus][more]
KAA0033487.11.3e-4348.57uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa][more]
TYK26842.11.3e-4348.57uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa][more]
TYK06362.18.4e-4348.02retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 4..82
e-value: 3.4E-5
score: 24.8
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 3..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011437.1Lag0011437.1mRNA