Lag0011393 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTGCCTCCGATACTGTATCCGCGCCACTCCAAACACCATGCCTTTTGCAAATTGTTCCACCGTCCGGTACTGCCTCCGCCGCAACGACGGCGCCGATGAACAAGTGCTCCAAGTCCGGGTGGGTTACGTGAGCCGTCTGATCTCCCGGTCGCCGTCGGGCGGACTTCCGTACGACATCATCGGAGAAAGTCCGTGGAGTCCAGTGGCGGATGGGGAGTTCCCTCTCCCTCTTCGAGAGCTGGAAGATCCGTTGTTGTGCGAGGCGTACGTGGTTGAACTGCTGCTGTCGTGGTTCAAGCTGGAGCGTGCAACCTGCAACGTCATGGCTCGGAAGGTGACGTCGTTGGTGGGTGAGATCTTGGGCGAAGGAAATTACGACGTGAAGTTCCAGGCGGTGGCGGATATCGAATACATTCATATGTTCTGGGCGGAGGAGCGGAGGAGGAGGAGCTCGGAGAATGTTAATGTTAATGTTAATGTTGGGCGGCGTGGTCATAGTCATGGTGTAATCATGGAGGAGAAAGTGGTTTTGGTGGCGAGGGAGATTAAGCGGGAACACTCGATCAAAGAATGCAGCATCTGTTGCGATGAACTACTCAACGACGTGGCTAAAATCCCATGCGGCCATGTTTATCACAAATCCTGCATCCTCACCTGGTTTCACATTAGCAATTCATGTCCCTTGTGTAGAACCAAAATCAAACAACAAACTTAA ATGTCTTGCCTCCGATACTGTATCCGCGCCACTCCAAACACCATGCCTTTTGCAAATTGTTCCACCGTCCGGTACTGCCTCCGCCGCAACGACGGCGCCGATGAACAAGTGCTCCAAGTCCGGGTGGGTTACGTGAGCCGTCTGATCTCCCGGTCGCCGTCGGGCGGACTTCCGTACGACATCATCGGAGAAAGTCCGTGGAGTCCAGTGGCGGATGGGGAGTTCCCTCTCCCTCTTCGAGAGCTGGAAGATCCGTTGTTGTGCGAGGCGTACGTGGTTGAACTGCTGCTGTCGTGGTTCAAGCTGGAGCGTGCAACCTGCAACGTCATGGCTCGGAAGGTGACGTCGTTGGTGGGTGAGATCTTGGGCGAAGGAAATTACGACGTGAAGTTCCAGGCGGTGGCGGATATCGAATACATTCATATGTTCTGGGCGGAGGAGCGGAGGAGGAGGAGCTCGGAGAATGTTAATGTTAATGTTAATGTTGGGCGGCGTGGTCATAGTCATGGTGTAATCATGGAGGAGAAAGTGGTTTTGGTGGCGAGGGAGATTAAGCGGGAACACTCGATCAAAGAATGCAGCATCTGTTGCGATGAACTACTCAACGACGTGGCTAAAATCCCATGCGGCCATGTTTATCACAAATCCTGCATCCTCACCTGGTTTCACATTAGCAATTCATGTCCCTTGTGTAGAACCAAAATCAAACAACAAACTTAA ATGTCTTGCCTCCGATACTGTATCCGCGCCACTCCAAACACCATGCCTTTTGCAAATTGTTCCACCGTCCGGTACTGCCTCCGCCGCAACGACGGCGCCGATGAACAAGTGCTCCAAGTCCGGGTGGGTTACGTGAGCCGTCTGATCTCCCGGTCGCCGTCGGGCGGACTTCCGTACGACATCATCGGAGAAAGTCCGTGGAGTCCAGTGGCGGATGGGGAGTTCCCTCTCCCTCTTCGAGAGCTGGAAGATCCGTTGTTGTGCGAGGCGTACGTGGTTGAACTGCTGCTGTCGTGGTTCAAGCTGGAGCGTGCAACCTGCAACGTCATGGCTCGGAAGGTGACGTCGTTGGTGGGTGAGATCTTGGGCGAAGGAAATTACGACGTGAAGTTCCAGGCGGTGGCGGATATCGAATACATTCATATGTTCTGGGCGGAGGAGCGGAGGAGGAGGAGCTCGGAGAATGTTAATGTTAATGTTAATGTTGGGCGGCGTGGTCATAGTCATGGTGTAATCATGGAGGAGAAAGTGGTTTTGGTGGCGAGGGAGATTAAGCGGGAACACTCGATCAAAGAATGCAGCATCTGTTGCGATGAACTACTCAACGACGTGGCTAAAATCCCATGCGGCCATGTTTATCACAAATCCTGCATCCTCACCTGGTTTCACATTAGCAATTCATGTCCCTTGTGTAGAACCAAAATCAAACAACAAACTTAA MSCLRYCIRATPNTMPFANCSTVRYCLRRNDGADEQVLQVRVGYVSRLISRSPSGGLPYDIIGESPWSPVADGEFPLPLRELEDPLLCEAYVVELLLSWFKLERATCNVMARKVTSLVGEILGEGNYDVKFQAVADIEYIHMFWAEERRRRSSENVNVNVNVGRRGHSHGVIMEEKVVLVAREIKREHSIKECSICCDELLNDVAKIPCGHVYHKSCILTWFHISNSCPLCRTKIKQQT Homology
BLAST of Lag0011393 vs. NCBI nr
Match: XP_022947841.1 (NEP1-interacting protein-like 1 [Cucurbita moschata]) HSP 1 Score: 227.3 bits (578), Expect = 1.4e-55 Identity = 128/231 (55.41%), Postives = 156/231 (67.53%), Query Frame = 0
BLAST of Lag0011393 vs. NCBI nr
Match: KAG6605222.1 (E3 ubiquitin-protein ligase AMFR, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 227.3 bits (578), Expect = 1.4e-55 Identity = 128/231 (55.41%), Postives = 156/231 (67.53%), Query Frame = 0
BLAST of Lag0011393 vs. NCBI nr
Match: XP_023006825.1 (NEP1-interacting protein-like 1 [Cucurbita maxima]) HSP 1 Score: 223.4 bits (568), Expect = 2.1e-54 Identity = 125/231 (54.11%), Postives = 155/231 (67.10%), Query Frame = 0
BLAST of Lag0011393 vs. NCBI nr
Match: KAG6605180.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 219.5 bits (558), Expect = 3.0e-53 Identity = 123/227 (54.19%), Postives = 149/227 (65.64%), Query Frame = 0
BLAST of Lag0011393 vs. NCBI nr
Match: XP_022947853.1 (E3 ubiquitin-protein ligase MBR2-like [Cucurbita moschata]) HSP 1 Score: 216.5 bits (550), Expect = 2.6e-52 Identity = 123/227 (54.19%), Postives = 150/227 (66.08%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07 Identity = 24/61 (39.34%), Postives = 40/61 (65.57%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07 Identity = 20/48 (41.67%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy Swiss-Prot
Match: Q95SP2 (E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster OX=7227 GN=sip3 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07 Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy Swiss-Prot
Match: Q75DC2 (Alcohol-sensitive RING finger protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=ASR1 PE=3 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.4e-07 Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.4e-07 Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 7.0e-56 Identity = 128/231 (55.41%), Postives = 156/231 (67.53%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54 Identity = 125/231 (54.11%), Postives = 155/231 (67.10%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52 Identity = 123/227 (54.19%), Postives = 150/227 (66.08%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 3.6e-52 Identity = 124/237 (52.32%), Postives = 154/237 (64.98%), Query Frame = 0
BLAST of Lag0011393 vs. ExPASy TrEMBL
Match: A0A5D3BYE9 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00110 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32 Identity = 84/223 (37.67%), Postives = 132/223 (59.19%), Query Frame = 0
BLAST of Lag0011393 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.8 bits (146), Expect = 1.7e-09 Identity = 19/47 (40.43%), Postives = 33/47 (70.21%), Query Frame = 0
BLAST of Lag0011393 vs. TAIR 10
Match: AT5G54990.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.5 bits (145), Expect = 2.2e-09 Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of Lag0011393 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.8 bits (138), Expect = 1.4e-08 Identity = 20/48 (41.67%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of Lag0011393 vs. TAIR 10
Match: AT4G12210.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.8e-08 Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of Lag0011393 vs. TAIR 10
Match: AT1G18760.1 (Zinc finger, C3HC4 type (RING finger) family protein ) HSP 1 Score: 56.6 bits (135), Expect = 3.1e-08 Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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