Lag0011351 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011351
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 22433711 .. 22435223 (-)
RNA-Seq Expression	Lag0011351
Synteny	Lag0011351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCCGAATTGAAGTATGACTTGAAGGCCATCAAGAAATTCTTTCGAAGATTTTCTAAGGTACTATAATATTTAGTTTACTTTTTTTTGTCTCAACAGTGTAGTTAAACATACGATATATGTAGGGCAAATATGTCGATTTAGAGAAATACTTTGGATCAGATGATGGTCTTCTAAAGAAGTGATAAGGATCCTTCAAAGAGGTGCTAGAGATGACGTGTCTGAAAACCAGAAAAAGATGATGGGATGATGGTCCTTCTGAAGGAGGTGATGAGGGTCCTTTGGGCGGGTCCGAACACCCAGAAAAAGGAGATGAGTCAGCTGAAGAGACCCTAGAAGGAGGTGATGGGTCTGACTTCCAGTTGAAAGGATCTGACGAGCAGAGGAGGACACACGAACCTGGTAATAATTAGTTCGTACTATTATCATTCGTACTATTTACATTAGTTTATTGATATTGTGTTTGTTGTGTCGTTGCATAGGTTGTTGAGCCAGAAAAAGGAGATGAGCCAGCTGAAGAGACCCAAAAGTAGGTGATGGATCCGACTTCCAGTTGAAAGGAACTAACGAGGCAGAGGAGGGACACACGAACCTGGTAATAATTAGTTCGTATTATTTATCATTCGCACTATTACATTAGTTATGATATTGTGTTTGTTGCGTCGTTGCATAGCCTGTTGAGCCGTCACAGAGTATTGAAGAGATAGTGGCATTTGATGGAGTCACACACTCTTGGTACCAAAGATGAGGTAAGATCGAAGCTTCTATGTAGTTAAGGTACATAACCCTTGTAGAAAATATTGCATTTAATTCCTTATTAGCTAATCAACTAATAATGCCCATGTAGGTCATTGACTCGCTATTAAGTTTATTTGGAAAAAACTGGATGCTCGTCCATACTTATGCAGACGCAAATTTGTGACAGGAGACGTGGTTGTCGCGGTAAGTAATACATGTTTATTGTTTTCTTATGTAGGATTTTATTATTTGGTGTTTTTGATTAACTAGTCGAGTATGGTAATATTAATCATGTGTTATATAGGACTTTCTATGACGAGACGAAGTACTAGAAGCACTATGACTGGAGTAAGTGGAAGATCGTCATGGACTACGTTATGGGCAACCATTCTTACCATAACATTCCTTGGAGTTCAGTTGAAGCGGTCTACATACCATTCAACCTTGGTGGGAACCATTGGGTGTTGCTGTGTGCTGACTCAAAGATCGGCAAGTTGGTGGTGTCTGATTCCTTTATGCACTTGAATACAGACACCGACTAGAGACGCAGTTGAAGCTTGTTCGAACACTCATGCCGATTTTTCTTGCTAAGTGTGGTGTCATGAAGGTGAAGCCTACACTTCCATTGAATGGATGGAGGCTCAGGAGGAACAAGCTAGTTCCACAGCAGAAGGACAGTGGGGATTGTGGGGTATTCACTGCCAAATTTTTGGAATATGATGTAACGAATTCCAAACTAGACACCCTTAGCCAGGATAGCATGGACTTTTGA

mRNA sequence

ATGGATGCCGAATTGAAGTATGACTTGAAGGCCATCAAGAAATTCTTTCGAAGATTTTCTAAGGTTGTTGAGCCAGAAAAAGGAGATGAGCCAGCTGAAGAGACCCAAAATTATGATATTGTGTTTGTTGCGTCGTTGCATAGCCTGTTGAGCCGTCACAGAACGCAAATTTGTGACAGGAGACGTGGTTGTCGCGGACTTTCTATGACGAGACGAAGTACTAGAAGCACTATGACTGGAGTAAGTGGAAGATCGTCATGGACTACGTTATGGGCAACCATTCTTACCATAACATTCCTTGGAGTTCAGTTGAAGCGACACCGACTAGAGACGCAGTTGAAGCTTGTTCGAACACTCATGCCGATTTTTCTTGCTAAGTGTGGTGTCATGAAGGTGAAGCCTACACTTCCATTGAATGGATGGAGGCTCAGGAGGAACAAGCTAGTTCCACAGCAGAAGGACAGTGGGGATTGTGGGGTATTCACTGCCAAATTTTTGGAATATGATGTAACGAATTCCAAACTAGACACCCTTAGCCAGGATAGCATGGACTTTTGA

Coding sequence (CDS)

ATGGATGCCGAATTGAAGTATGACTTGAAGGCCATCAAGAAATTCTTTCGAAGATTTTCTAAGGTTGTTGAGCCAGAAAAAGGAGATGAGCCAGCTGAAGAGACCCAAAATTATGATATTGTGTTTGTTGCGTCGTTGCATAGCCTGTTGAGCCGTCACAGAACGCAAATTTGTGACAGGAGACGTGGTTGTCGCGGACTTTCTATGACGAGACGAAGTACTAGAAGCACTATGACTGGAGTAAGTGGAAGATCGTCATGGACTACGTTATGGGCAACCATTCTTACCATAACATTCCTTGGAGTTCAGTTGAAGCGACACCGACTAGAGACGCAGTTGAAGCTTGTTCGAACACTCATGCCGATTTTTCTTGCTAAGTGTGGTGTCATGAAGGTGAAGCCTACACTTCCATTGAATGGATGGAGGCTCAGGAGGAACAAGCTAGTTCCACAGCAGAAGGACAGTGGGGATTGTGGGGTATTCACTGCCAAATTTTTGGAATATGATGTAACGAATTCCAAACTAGACACCCTTAGCCAGGATAGCATGGACTTTTGA

Protein sequence

MDAELKYDLKAIKKFFRRFSKVVEPEKGDEPAEETQNYDIVFVASLHSLLSRHRTQICDRRRGCRGLSMTRRSTRSTMTGVSGRSSWTTLWATILTITFLGVQLKRHRLETQLKLVRTLMPIFLAKCGVMKVKPTLPLNGWRLRRNKLVPQQKDSGDCGVFTAKFLEYDVTNSKLDTLSQDSMDF

Homology

[Close]

BLAST of Lag0011351 vs. NCBI nr
Match: XP_022156568.1 (uncharacterized protein LOC111023442 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-12
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 109 LETQLKLVRTLMPIFLAKCGVMKVKPTLPLNGWRLRRNKLVPQQKDSGDCGVFTAKFLEY 168
           LE QLK++ T++P  L K  V+ V+P LP+  WR+RR    P+Q  SGDCG+F  K+ EY
Sbjct: 59  LEEQLKVMHTVIPSLLHKSQVIAVRPNLPMTPWRIRRVTSTPEQFSSGDCGIFCVKYFEY 118

Query: 169 DVTNSKLDTLSQDSMDF 186
           DVT + L+TL Q++M +
Sbjct: 119 DVTWTSLETLRQNNMSY 135

[Close]

BLAST of Lag0011351 vs. NCBI nr
Match: XP_022154364.1 (uncharacterized protein LOC111021646 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 8.4e-11
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 108 RLETQLKLVRTLMPIFLAKCGVMKVKPTLPLNGWRLRRNKLVPQQKDSGDCGVFTAKFLE 167
           +LE +LK + T++P  + + GV   KP +PL  WR+RR    PQQ   GDCG+F   F E
Sbjct: 120 QLEQELKPMITIIPTLICRVGVHLYKPNIPLTPWRIRRVSSAPQQGMDGDCGIFCINFFE 179

Query: 168 YDVTNSKLDTLSQDSMDF 186
           YDVT+   DTL+Q  M F
Sbjct: 180 YDVTSCSFDTLTQSRMSF 197

[Close]

BLAST of Lag0011351 vs. NCBI nr
Match: XP_022155154.1 (uncharacterized protein LOC111022296 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-10
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 90  LWATILTITFLGVQLKRHRLETQLKLVRTLMPIFLAKCGVMKVKPTLPLNGWRLRRNKLV 149
           +W +++ IT          LE QL ++R ++P  L K   + V+P LP+  WR+ R    
Sbjct: 56  VWDSLMAIT------PDASLEEQLNVMRAVIPPLLHKSQAITVRPNLPMTPWRISRVTST 115

Query: 150 PQQKDSGDCGVFTAKFLEYDVTNSKLDTLSQDSMDF 186
           PQQ  SGDCG+F  K+ EYDVT + L+TL Q++M +
Sbjct: 116 PQQFGSGDCGIFCVKYFEYDVTGTSLETLRQNNMSY 145

[Close]

BLAST of Lag0011351 vs. NCBI nr
Match: XP_022141784.1 (uncharacterized protein LOC111012067 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 5.4e-10
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 109 LETQLKLVRTLMPIFLAKCGVMKVKPTLPLNGWRLRRNKLVPQQKDSGDCGVFTAKFLEY 168
           LE QL+++RT++P  L K  V+ V P LP+  WR+RR    PQQ  S DC +F  K+ EY
Sbjct: 59  LEEQLEVMRTVIPSLLHKSQVIAVHPNLPMIPWRIRRVTSAPQQFGSRDCDIFCVKYFEY 118

Query: 169 DVTNSKLDTLSQDSMDF 186
           DVT + L+TL Q++M +
Sbjct: 119 DVTGTSLETLRQNNMPY 135

[Close]

BLAST of Lag0011351 vs. NCBI nr
Match: XP_022148137.1 (uncharacterized protein LOC111016890 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-09
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 78  MTGVSGRSSWTTLWATILTITFLGVQLKRHRLETQLKLVRTLMPIFLAKCGVMKVKPTLP 137
           M G+       T+W ++ T T L        LE +LK + T++P  L   G+  V+P LP
Sbjct: 54  MLGIDLVQGDITVWDSLQTATPL------DELEKELKPMCTILPTLLHHGGIFSVRPDLP 113

Query: 138 LNGWRLRRNKLVPQQKDSGDCGVFTAKFLEYDVTNSKLDTLSQDSM 184
           +  WR+RR + VPQQ    DCG+F  ++ EYD T S +DTL+QD++
Sbjct: 114 VVPWRVRRVR-VPQQSSVTDCGIFYVRYFEYDATGSNMDTLTQDNI 152

The following BLAST results are available for this feature:

BLAST of Lag0011351 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156568.1	9.9e-12	48.05	uncharacterized protein LOC111023442 [Momordica charantia]	[more]
XP_022154364.1	8.4e-11	46.15	uncharacterized protein LOC111021646 [Momordica charantia]	[more]
XP_022155154.1	1.9e-10	39.58	uncharacterized protein LOC111022296 [Momordica charantia]	[more]
XP_022141784.1	5.4e-10	46.75	uncharacterized protein LOC111012067 [Momordica charantia]	[more]
XP_022148137.1	3.5e-09	38.68	uncharacterized protein LOC111016890 [Momordica charantia]	[more]

BLAST of Lag0011351 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 98..185 e-value: 2.2E-8 score: 35.7
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 123..175 e-value: 5.5E-7 score: 29.6
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 123..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011351.1	Lag0011351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity