Lag0011330 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011330
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr1: 21798253 .. 21798646 (+)
RNA-Seq Expression	Lag0011330
Synteny	Lag0011330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTCTGGCTTGAAGCAAGGGTAACTATTAGTGGCCGAGTACGAGAGAAAGTATACCAAGCTTTCACGGTATGCTGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCGAAGGTTTGAAAGAGGGCTGCGTTTTGAGATACATCCCACGGTTACAGTTATTGCTTAGTGGACGAATTTTTCTCAGTTATTAGAGACTGCCCAACGTGTGGAGTAGAGTATAATAGAGGAGAAGTTAGTAGTGGAGCCTAGTCATTGGGCTTCAACAGCCAGCGGTTTCCGAGGTCGTAAGCAGTGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTTAAGCGTTGGTCTGGTGGCCAGTCATCAAGGCAGATGAGTTCAAGTAGTTGA

mRNA sequence

ATGAGTTTCTGGCTTGAAGCAAGGGTAACTATTAGTGGCCGAGTACGAGAGAAAGTATACCAAGCTTTCACGAGTATAATAGAGGAGAAGTTAGTAGTGGAGCCTAGTCATTGGGCTTCAACAGCCAGCGGTTTCCGAGGTCGTAAGCAGTGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTTAAGCGTTGGTCTGGTGGCCAGTCATCAAGGCAGATGAGTTCAAGTAGTTGA

Coding sequence (CDS)

ATGAGTTTCTGGCTTGAAGCAAGGGTAACTATTAGTGGCCGAGTACGAGAGAAAGTATACCAAGCTTTCACGAGTATAATAGAGGAGAAGTTAGTAGTGGAGCCTAGTCATTGGGCTTCAACAGCCAGCGGTTTCCGAGGTCGTAAGCAGTGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTTAAGCGTTGGTCTGGTGGCCAGTCATCAAGGCAGATGAGTTCAAGTAGTTGA

Protein sequence

MSFWLEARVTISGRVREKVYQAFTSIIEEKLVVEPSHWASTASGFRGRKQWRFTPGVNVSGRQDFKRWSGGQSSRQMSSSS

Homology

[Close]

BLAST of Lag0011330 vs. NCBI nr
Match: TYK02477.1 (uncharacterized protein E5676_scaffold1738G001060 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 3.3e-12
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 7   ARVTISGRVREKVYQAFTSIIEEKLVVEPSHWASTASGFRGRKQWRFTPGVNVSGRQDFK 66
           A+ T   ++ E   Q   SI EEKL VE S  ASTASGFRGR+QWRFT G N+SGRQDFK
Sbjct: 201 AKWTNFSQLVETALQVAQSITEEKLAVELSRGASTASGFRGREQWRFTHGENISGRQDFK 260

Query: 67  RWSGGQSSRQMSSSS 82
             SGGQ+SR MS  S
Sbjct: 261 SLSGGQASRNMSYGS 275

[Close]

BLAST of Lag0011330 vs. NCBI nr
Match: KAA0036882.1 (uncharacterized protein E6C27_scaffold2534G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 9.7e-12
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 7   ARVTISGRVREKVYQAFTSIIEEKLVVEPSHWASTASGFRGRKQWRFTPGVNVSGRQDFK 66
           A+ T   ++ E   +   SI EEKL VE S   STASGFRGR+QWRFTPG+N+S RQDFK
Sbjct: 201 AKWTNFSQLVETALRVEQSITEEKLAVELSRGTSTASGFRGREQWRFTPGINISSRQDFK 260

Query: 67  RWSGGQSSRQMS 79
             SGGQ+SR +S
Sbjct: 261 NRSGGQASRNVS 272

[Close]

BLAST of Lag0011330 vs. NCBI nr
Match: TYK14494.1 (uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 7   ARVTISGRVREKVYQAFTSIIEEKLVVEPSHWASTASGFRGRKQWRFTPGVNVSGRQDFK 66
           A+ T   ++ E   +   SI+EEK V+E S   ST SG RGR+QWRFTPGVNVSG QDFK
Sbjct: 309 AKWTNFSQLVETALRVEQSIVEEKSVMELSRGVSTTSGIRGREQWRFTPGVNVSGCQDFK 368

Query: 67  RWSGGQSSRQMSSSS 82
           R SGG+  RQMSS S
Sbjct: 369 RRSGGKPLRQMSSGS 383

[Close]

BLAST of Lag0011330 vs. NCBI nr
Match: KAA0041109.1 (hypothetical protein E6C27_scaffold128G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 7   ARVTISGRVREKVYQAFTSIIEEKLVVEPSHWASTASGFRGRKQWRFTPGVNVSGRQDFK 66
           A+ T   ++ E   +   SI EEK  VE S   STASGFRGR+QWRFTPG+N+S RQDFK
Sbjct: 184 AKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQWRFTPGINISSRQDFK 243

Query: 67  RWSGGQSSRQMSSSS 82
             SGGQ+SR +S  S
Sbjct: 244 NRSGGQASRNVSYGS 258

[Close]

BLAST of Lag0011330 vs. NCBI nr
Match: KAA0065345.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 7   ARVTISGRVREKVYQAFTSIIEEKLVVEPSHWASTASGFRGRKQWRFTPGVNVSGRQDFK 66
           A+ T    + E   +   SIIEEK  VE S    TASGFRGR+QWRFTPG+N+S RQDFK
Sbjct: 136 AKWTNCSELEETALRVEQSIIEEKSAVELSRGTLTASGFRGREQWRFTPGINISSRQDFK 195

Query: 67  RWSGGQSSRQMSSSS 82
             S GQ+SR MS  S
Sbjct: 196 NRSRGQASRNMSYGS 210

The following BLAST results are available for this feature:

BLAST of Lag0011330 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02477.1	3.3e-12	61.33	uncharacterized protein E5676_scaffold1738G001060 [Cucumis melo var. makuwa]	[more]
KAA0036882.1	9.7e-12	58.33	uncharacterized protein E6C27_scaffold2534G00010 [Cucumis melo var. makuwa]	[more]
TYK14494.1	2.8e-11	58.67	uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]	[more]
KAA0041109.1	6.3e-11	56.00	hypothetical protein E6C27_scaffold128G00120 [Cucumis melo var. makuwa]	[more]
KAA0065345.1	1.1e-10	56.00	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]

BLAST of Lag0011330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011330.1	Lag0011330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity