Lag0011313 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011313
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr1: 21047875 .. 21051890 (-)
RNA-Seq Expression	Lag0011313
Synteny	Lag0011313

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTATTATCAGCGGGATCCTCCCAGAACTCCAGATTTTTTGGAATATGTTTCAACTCCAATGAAGCTCTATCGATCAAGCACTAGACAACTGGCTATTCCTAACTCAGTCACTGGCGTTCATCAATACACAATGATCTAGCGTGAATTATCGCCACACAACTCCTAAATCATCCCTAAAACTAGGAGAGGCTATACATACCAGCTAGCTAGGCGGGCACATAATGAAATTAAAGAACAACAATAATTCAAGATGATCATGATCAATAGAATTTCCAAATTTTATAAATATAACAATCACATCATTATTAACCTATGCATACAAGCAATAGTTCATGATTGAAAACATGAAGTACGTTACAATCTCGATAAGCACATCCATAATGCAAAATACACAAGAAATACTAATCTTTTTAGCAATTGGAGAGATGAAATGGCTGCTCCAAACCACCAAGAACATAGAGGAACTTCGTCTCCTTGAGAGGAATTGCACTTGGTCTTCTTAGACCTCCATTTTGCCGTCAATCCGGCCTCCAGCCAATTGATTCGGTCCCCCAATCGTGAATGAGTTTATCTTTGAGGGCTCCTCCTTTTATAAGATGAGGTTTAACCTAATTAGGTTAAATTGGACACATGGCAGACTTTCTAATCTTCTTAGATCCGTAAATAATTCAGATAACACCACTTTATTAAAATGACTAACGAGTTGTGACGTGGCAGTTTTGCTTCTTGCTTTGCTGCAACAAAGATTCTACTCCCTCACGTCGCTCAGCAATATTTTCGGCACAAAATAACTTCCAAAGCCTTCATTCTTCCAAATGGGTTAAAACATATAATATTCATCTAAAAGCAACCATATTTAACACAAATGACACACAAAATACTATAAACCTAAGGCCTAAATAACTCCCTTTTGGAGAGTTATCAGTAGGCTTATTGAGTCGGCGATATTTGGCCACTCTCACCCATGCAAATCAAAGGACAATCCTTAGTAAAAAGGAGTTCATAGTTAGCTCAAGATTAAGATCGGGTTACCTAGGTTATATGTATGAGATGTTCAGTTTCAACAGTAAACGGTGTTGTAAAGTGAAAGTGACTTATCTCTAGTTCGATCTCTATGCAAACTCTTTGCATAGGACGCCCTCACTCACATGTCTTATACATGAACGATTAGGATCACATCGTCTGTCTTTAAGGAACAAAGCGAATCGCGCTAATAGTTTCCCCAAGAATAACGTACCCAGCCTTATCCATATACTATAGATCGTGTAGACTATTTATTTGAACTTGATCCATACTTATGTCACACATAAACTTCAAATATACATAATATAGCCATGGGTTCTTAGTTTATTGGATTTGTGGTTATATTTAGGCAAAACAAATATATAGAAATAATACTTCATTGAAGCAAATCAAATGTTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACATTTTGTCCCCTCGATATGACCGTGATCAGTAAGTCAATCCTTCACAGGTTGTCCGTTACTATGGTCAGGTCAAAAAGTCTTTTTTACCCCTATAACACTTCTTGTTGCTTAAGCCATCACCGAGTCCCTAATGAACAATTGATTTGTGGTCCGACCACGAAACCTAAAACCTCTCGGGCCAATGAGAGGGCAGTGCGCCTTTGTTCACGTTCCGGAGTCAGCACTTAAAGGAACAACCTCTCTACTATCCCTAAAAAAGGGTAGGAGAGAATTTCATCTTGCAAGACTATGTCCCCAACTATCTACTCGGTTTTATCCCCAAAGTGGTAGCTTATTGAGTTACGTTGTTAGGTCACTCTCACCCATACAAATCAAAGGATAATCCCGAATAAACAGGAGTTCATAGTTAGTTCATGATTAAGGTCGAGTTACCTAGGTCATCGCATTGAAATAGTCAGTTTTACAGTAAACGGAGTTATGAAGTTAAAGTGACTTAATGAAGGATTGGAATTCCCAATTCCGTTACAGTGGAAGCAATTGGACCGTTCATAAATTAATTTTGTTTTACAAAATACCAATACATTGGCAAAAAGTTAAGCGATGAGAAACATATCTCCGTCTGACGACTCTGAATTCTTCAACGGACACCACCACAAGGGCTTCCCCACTATAACACTGAGATTAGGAACTTAGTTGTGGGACTACCTAATCTTGAATGGGAAAAACTCTTAGAGAGAAAAACCTCTCTAGAGTTCTTGGGTTGAGAGAATATGAGAGGGAGGCTAGAATGAGACCTTATGGTTAGGGTTCTCATAACCTTTCCTTTTATAAGAGAGGAAACCCTAATGTGAGGTTAGGAAACAATCTTGATCGTTAGATCAAGATCAATTAATTAATTGATAAAATCAATTAATTTAAATGCTAATTAATTAATCTCATGCACATTTAAATCTTATTTAAATGTAATTTCCTCACATCATATGTATAGTTTACTTAATTTAATTAAATCACATTTAATTAATTCAATTAAAACAATCAAATAATTAATTCCAATAATTAATTAATTTCATAATTAAATATCACCCATATTTAATTAATTACTCATTAGAATCATATTCTAATAGCTCTAAGGTTTATTTTGCACGATAACCTATTTCATGAAAAAGGTAATTAAGTCAGTTTTAAGGCACGACTTATAGGGAGGTAATGAGTCGTCTTCTAACCTTTTTAGAAGTTCATTTTTAGACCAATCTTCAATCCTATTGAAATTTAATTCGGCCTAACCTCAAGTGCAAAAGATAGGTGCCATTAGAAACACGTCGCCTTTTCTTTTGAGTCTCAGCTGTTTTAAATATCTCATAATTTAAAATCGCTCTAGACTATATCAGACTTAAAACATATATGTTACTCTTTATGTTTGCAGAAAAATATTGGCATCCTTTTCGATATGAATTGTTCATACATAAAAGGTAATATAATAGCCTTGTTCTAGAAAACAAGATATTAAAATCAAAATTTCTTTTTATCTTAGGAACCATATACATTAAATAATATGTATCGTTCCTTGAAAGAATAACTTCATGTCTCCCACTGCCTTAGCCGAGATGAACTCTTCTACTCTAACTCTAAGAGTTATCTTAACTAGTTCACAACTAGTGTTAGGAACTCATTCCTTGAAAAGAACACATGTGATTAATTAGCCCTGAACCAAGTATCCAGGATGAATTACTATTCATACTAAGAACGTTTTCAAGACGAATAAATCATATTTCGAGTCATGGATCATGTTCTTTTTAGCTAGGCAATTTTCTATGTTTTACTTATCGTGATTATTGCGACAATGAAATAGATATAACATCTTGAGGACATTATACATTTTAAGATTGATTCCATATCACTCACCACGATCTAGTTTTTAAAGTTTGTTTAGTAGTATGTTTCTATACCAATGAAAAATTTGGCGTATAAAAGAAGACATTTTATAGAACCTATACTTATCGCTGAAACTTTAAACAAATAAACTTTAAATTGGTTGTCTAATGTTTTAACCCTTTTACTAATCCATTGAATTTTGCAAAAGCAATTACGCGCCCTATAATCATAATTCTCTTGCAACGATACTTCAGAGGTTTAGAGCAACTGCCACCGAGGGGTGGTCAGCTAGTCCTCCTCTGGATTGGAGAAGCACGCCCAACCACTGTCACGCTTCAACTAGTAGATAGACCAGTGGTAAATCCTGAAGAAAAAATCGAGGATGTTCTGGTGAAAGTTGACAAATTTATTTTTCTAGCGGATTTCATTATACTGGACTACGAAGCTGATAGGGAAGTTCCCATTATTTTGGGAAGATTGTTCCTAGCAACTAACAATACATTAACTGATGTGCAAAAAGGAGAGCTCACCATGTGCATGAATGATCAAAAAGTAGTTTTTAATGTGTCCACCACATTAAAGTACCCAGACGACACTAAGGAATGCGACATGGTGGAACACATAGATGTATGTTCCCCAATGGAAATTCTGCAACTAAATGCGCTCAGAGCTGCGTGA

mRNA sequence

ATGCAGTATTATCAGCGGGATCCTCCCAGAACTCCAGATTTTTTGGAATATGTTTCAACTCCAATGAAGCTCTATCGATCAAGCACTAGACAACTGGCTATTCCTAACTCAGGCATAAAACCCAACATTTTGTCCCCTCGATATGACCGTGATCAAGGTTTAGAGCAACTGCCACCGAGGGGTGGTCAGCTAGTCCTCCTCTGGATTGGAGAAGCACGCCCAACCACTGTCACGCTTCAACTAGTAGATAGACCAGTGGTAAATCCTGAAGAAAAAATCGAGGATGTTCTGGTGAAAGTTGACAAATTTATTTTTCTAGCGGATTTCATTATACTGGACTACGAAGCTGATAGGGAAGTTCCCATTATTTTGGGAAGATTGTTCCTAGCAACTAACAATACATTAACTGATGTGCAAAAAGGAGAGCTCACCATGTGCATGAATGATCAAAAAGTAGTTTTTAATGTGTCCACCACATTAAAGTACCCAGACGACACTAAGGAATGCGACATGGTGGAACACATAGATGTATGTTCCCCAATGGAAATTCTGCAACTAAATGCGCTCAGAGCTGCGTGA

Coding sequence (CDS)

ATGCAGTATTATCAGCGGGATCCTCCCAGAACTCCAGATTTTTTGGAATATGTTTCAACTCCAATGAAGCTCTATCGATCAAGCACTAGACAACTGGCTATTCCTAACTCAGGCATAAAACCCAACATTTTGTCCCCTCGATATGACCGTGATCAAGGTTTAGAGCAACTGCCACCGAGGGGTGGTCAGCTAGTCCTCCTCTGGATTGGAGAAGCACGCCCAACCACTGTCACGCTTCAACTAGTAGATAGACCAGTGGTAAATCCTGAAGAAAAAATCGAGGATGTTCTGGTGAAAGTTGACAAATTTATTTTTCTAGCGGATTTCATTATACTGGACTACGAAGCTGATAGGGAAGTTCCCATTATTTTGGGAAGATTGTTCCTAGCAACTAACAATACATTAACTGATGTGCAAAAAGGAGAGCTCACCATGTGCATGAATGATCAAAAAGTAGTTTTTAATGTGTCCACCACATTAAAGTACCCAGACGACACTAAGGAATGCGACATGGTGGAACACATAGATGTATGTTCCCCAATGGAAATTCTGCAACTAAATGCGCTCAGAGCTGCGTGA

Protein sequence

MQYYQRDPPRTPDFLEYVSTPMKLYRSSTRQLAIPNSGIKPNILSPRYDRDQGLEQLPPRGGQLVLLWIGEARPTTVTLQLVDRPVVNPEEKIEDVLVKVDKFIFLADFIILDYEADREVPIILGRLFLATNNTLTDVQKGELTMCMNDQKVVFNVSTTLKYPDDTKECDMVEHIDVCSPMEILQLNALRAA

Homology

[Close]

BLAST of Lag0011313 vs. NCBI nr
Match: XP_030497888.1 (uncharacterized protein LOC115713544 [Cannabis sativa])

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 79/116 (68.10%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 61  GGQLVLLWIGEARPTTVTLQLVDRPVVNPEEKIEDVLVKVDKFIFLADFIILDYEADREV 120
           G   + L IGEARPTTVTLQLVDR + +PE KIEDV V+VDKFIF ADFIILDYEAD+EV
Sbjct: 451 GCSAIKLGIGEARPTTVTLQLVDRSMAHPEGKIEDVFVQVDKFIFPADFIILDYEADKEV 510

Query: 121 PIILGRLFLATNNTLTDVQKGELTMCMNDQKVVFNVSTTLKYPDDTKECDMVEHID 177
           PIILGR FLAT  TL DVQ GELTM +NDQKV FNV   +++PD+ +EC  +  ID
Sbjct: 511 PIILGRPFLATGRTLIDVQNGELTMRVNDQKVTFNVFNAMRFPDEIEECSGLSVID 566

[Close]

BLAST of Lag0011313 vs. NCBI nr
Match: XP_030504924.1 (uncharacterized protein LOC115719886 [Cannabis sativa])

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 78/110 (70.91%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 67  LWIGEARPTTVTLQLVDRPVVNPEEKIEDVLVKVDKFIFLADFIILDYEADREVPIILGR 126
           L IGEARPTTVTLQL DR + +PE KIEDVLV+VDKFIF ADFIILDYEADR+VPIILGR
Sbjct: 49  LGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGR 108

Query: 127 LFLATNNTLTDVQKGELTMCMNDQKVVFNVSTTLKYPDDTKECDMVEHID 177
            FLAT  TL DVQ GELTM +NDQKV FNV   +++PD+ +EC  +  ID
Sbjct: 109 PFLATGRTLIDVQNGELTMRVNDQKVTFNVFNAMRFPDEIEECSRISVID 158

[Close]

BLAST of Lag0011313 vs. NCBI nr
Match: XP_030477929.1 (uncharacterized protein LOC115694963 [Cannabis sativa])

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 78/110 (70.91%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 67  LWIGEARPTTVTLQLVDRPVVNPEEKIEDVLVKVDKFIFLADFIILDYEADREVPIILGR 126
           L IGEARPTTVTLQL DR + +PE KIEDVLV+VDKFIF ADFIILDYEADR+VPIILGR
Sbjct: 109 LGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGR 168

Query: 127 LFLATNNTLTDVQKGELTMCMNDQKVVFNVSTTLKYPDDTKECDMVEHID 177
            FLAT  TL DVQ GELTM +NDQKV FNV   +++PD+ +EC  +  ID
Sbjct: 169 PFLATGRTLIDVQNGELTMRVNDQKVTFNVFNAMRFPDEIEECSRISVID 218

[Close]

BLAST of Lag0011313 vs. NCBI nr
Match: XP_030478287.1 (uncharacterized protein LOC115695357 [Cannabis sativa])

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 78/110 (70.91%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 67  LWIGEARPTTVTLQLVDRPVVNPEEKIEDVLVKVDKFIFLADFIILDYEADREVPIILGR 126
           L IGEARPTTVTLQL DR + +PE KIEDVLV+VDKFIF ADFIILDYEADR+VPIILGR
Sbjct: 130 LGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGR 189

Query: 127 LFLATNNTLTDVQKGELTMCMNDQKVVFNVSTTLKYPDDTKECDMVEHID 177
            FLAT  TL DVQ GELTM +NDQKV FNV   +++PD+ +EC  +  ID
Sbjct: 190 PFLATGRTLIDVQNGELTMRVNDQKVTFNVFNAMRFPDEIEECSRISVID 239

[Close]

BLAST of Lag0011313 vs. NCBI nr
Match: XP_030502183.1 (uncharacterized protein LOC115717351 [Cannabis sativa])

HSP 1 Score: 151.4 bits (381), Expect = 8.1e-33
Identity = 77/110 (70.00%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 67  LWIGEARPTTVTLQLVDRPVVNPEEKIEDVLVKVDKFIFLADFIILDYEADREVPIILGR 126
           L IGEARPTTVTLQL DR + +PE KIEDVLV+VDKFIF ADFIILDYEADR+VPIILGR
Sbjct: 182 LGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGR 241

Query: 127 LFLATNNTLTDVQKGELTMCMNDQKVVFNVSTTLKYPDDTKECDMVEHID 177
            FLAT  TL DVQ  ELTM +NDQKV FNV   +++PD+ +EC  +  ID
Sbjct: 242 SFLATGRTLIDVQNEELTMRVNDQKVTFNVFNAMRFPDEIEECSRISVID 291

The following BLAST results are available for this feature:

BLAST of Lag0011313 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030497888.1	1.2e-33	68.10	uncharacterized protein LOC115713544 [Cannabis sativa]	[more]
XP_030504924.1	1.2e-33	70.91	uncharacterized protein LOC115719886 [Cannabis sativa]	[more]
XP_030477929.1	1.2e-33	70.91	uncharacterized protein LOC115694963 [Cannabis sativa]	[more]
XP_030478287.1	1.2e-33	70.91	uncharacterized protein LOC115695357 [Cannabis sativa]	[more]
XP_030502183.1	8.1e-33	70.00	uncharacterized protein LOC115717351 [Cannabis sativa]	[more]

BLAST of Lag0011313 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 65..158 e-value: 1.2E-9 score: 39.9
None	No IPR available	PANTHER	PTHR33067:SF24	SUBFAMILY NOT NAMED	coord: 67..168
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 67..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011313.1	Lag0011313.1	mRNA