Lag0011310 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011310
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Enzymatic polyprotein
Location	chr1: 20873624 .. 20874148 (-)
RNA-Seq Expression	Lag0011310
Synteny	Lag0011310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCATGGGATAACCTCACCAGAAATCCTCAATGGACAATAGAAAATGCCTTTGTCCCTCAAAAGAGAGAAAATGAACTTTCCCATATCATCGAACATCCTGATGGGAGAGTAGAGATCAAATTTGAAGATGAAAGACCTCAATTCCCAGTTGTCAAAGAAAACATGAACAAAAAGGAGTTCATGAGTTCAAGACCAAGTACTTCTGGAATAAGACCAGAATTCATTCAAAGTATTGGCAGAACTAACTCACTTAGAGTTATGTCTGTAAAATTAGAACATGGAGTTCCAAATCTCCAATACGAAGAGGATAGACCTCTTTCACCAACCCAAACTGACATGGAAACTGACTCAGTCTTCAAAAGTCAATTGAATGTTATCATCTCCGATAACGAATTCAAAATTGACAAAGAAGCTCTGCAAAAGGAATTCATGGCAAGAGAAAACAGAGAAGAAAGAAAACACTTCTTTAATGATTACTCTGAGGCACAAAGAAAGATTATTAAGGAAGAATACTTTTAA

mRNA sequence

ATGCTTTCATGGGATAACCTCACCAGAAATCCTCAATGGACAATAGAAAATGCCTTTGTCCCTCAAAAGAGAGAAAATGAACTTTCCCATATCATCGAACATCCTGATGGGAGAGTAGAGATCAAATTTGAAGATGAAAGACCTCAATTCCCAGTTGTCAAAGAAAACATGAACAAAAAGGAGTTCATGAGTTCAAGACCAAGTACTTCTGGAATAAGACCAGAATTCATTCAAAGTATTGGCAGAACTAACTCACTTAGAGTTATGTCTGTAAAATTAGAACATGGAGTTCCAAATCTCCAATACGAAGAGGATAGACCTCTTTCACCAACCCAAACTGACATGGAAACTGACTCAGTCTTCAAAAGTCAATTGAATGTTATCATCTCCGATAACGAATTCAAAATTGACAAAGAAGCTCTGCAAAAGGAATTCATGGCAAGAGAAAACAGAGAAGAAAGAAAACACTTCTTTAATGATTACTCTGAGGCACAAAGAAAGATTATTAAGGAAGAATACTTTTAA

Coding sequence (CDS)

ATGCTTTCATGGGATAACCTCACCAGAAATCCTCAATGGACAATAGAAAATGCCTTTGTCCCTCAAAAGAGAGAAAATGAACTTTCCCATATCATCGAACATCCTGATGGGAGAGTAGAGATCAAATTTGAAGATGAAAGACCTCAATTCCCAGTTGTCAAAGAAAACATGAACAAAAAGGAGTTCATGAGTTCAAGACCAAGTACTTCTGGAATAAGACCAGAATTCATTCAAAGTATTGGCAGAACTAACTCACTTAGAGTTATGTCTGTAAAATTAGAACATGGAGTTCCAAATCTCCAATACGAAGAGGATAGACCTCTTTCACCAACCCAAACTGACATGGAAACTGACTCAGTCTTCAAAAGTCAATTGAATGTTATCATCTCCGATAACGAATTCAAAATTGACAAAGAAGCTCTGCAAAAGGAATTCATGGCAAGAGAAAACAGAGAAGAAAGAAAACACTTCTTTAATGATTACTCTGAGGCACAAAGAAAGATTATTAAGGAAGAATACTTTTAA

Protein sequence

MLSWDNLTRNPQWTIENAFVPQKRENELSHIIEHPDGRVEIKFEDERPQFPVVKENMNKKEFMSSRPSTSGIRPEFIQSIGRTNSLRVMSVKLEHGVPNLQYEEDRPLSPTQTDMETDSVFKSQLNVIISDNEFKIDKEALQKEFMARENREERKHFFNDYSEAQRKIIKEEYF

Homology

[Close]

BLAST of Lag0011310 vs. NCBI nr
Match: KAA0057417.1 (Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-13
Identity = 64/173 (36.99%), Postives = 94/173 (54.34%), Query Frame = 0


Query: 2   LSWDNLTRNPQWTIENAFVPQKRENELSHIIEHPDGRVEIKFEDERPQFPVVKENMNKKE 61
           L WD LT+NP W ++    P KR +  + IIE PDG VE++F +    +P +       E
Sbjct: 161 LKWDELTKNPIWKLQGETTPIKRSSTEASIIEFPDGNVEVQF-NTGISYPRI------SE 220

Query: 62  FMSSRPSTSGIRPE--FIQSIGRTNSLRVMSVKLEHGVPNLQYE-EDRPLSPTQTDMETD 121
            MSSRPSTS I+ E  +  ++ R+ S+R  SV   H +P++ YE ED  LSPTQ++ME  
Sbjct: 221 IMSSRPSTSSIKTETSYRDTLRRSESIRA-SVDFSHTIPDVHYEKEDESLSPTQSNMERR 280

Query: 122 S-VFKSQLNVIISDNEFKIDKEALQKEFMARENREERKHFFN--DYSEAQRKI 169
           S    +Q+NVI  D E   +  ++  +   +   E RK F    D+ E   K+
Sbjct: 281 SEPVHNQINVISDDKERFREHYSVYIDQWIKAPAETRKPFLTMPDFVEGMLKM 325

[Close]

BLAST of Lag0011310 vs. NCBI nr
Match: KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-13
Identity = 63/173 (36.42%), Postives = 94/173 (54.34%), Query Frame = 0


Query: 2   LSWDNLTRNPQWTIENAFVPQKRENELSHIIEHPDGRVEIKFEDERPQFPVVKENMNKKE 61
           L WD LT+NP W ++    P  R +  + I E PDG VE++F +    +P +       E
Sbjct: 256 LKWDELTKNPIWKLQGETAPVTRSSTEASITEFPDGNVEVQF-NSGLSYPKI------SE 315

Query: 62  FMSSRPSTSGIRPE--FIQSIGRTNSLRVMSVKLEHGVPNLQYE-EDRPLSPTQTDMETD 121
            MSSRPSTS I+ E  + +++ R+ S+R  SV   H +P++ YE ED  LSPTQ+DME  
Sbjct: 316 IMSSRPSTSSIKSEASYRETLRRSESIRA-SVDFSHTIPDIHYEKEDGSLSPTQSDMERR 375

Query: 122 S-VFKSQLNVIISDNEFKIDKEALQKEFMARENREERKHFFN--DYSEAQRKI 169
           S    +Q+NVI +D E   +  ++  +   +   E RK F    D+ E   K+
Sbjct: 376 SEPVYNQINVISNDKERFREHYSVYIDQWIKAPAETRKPFLTMPDFVEGMLKV 420

[Close]

BLAST of Lag0011310 vs. NCBI nr
Match: KAA0059217.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-13
Identity = 64/173 (36.99%), Postives = 94/173 (54.34%), Query Frame = 0


Query: 2   LSWDNLTRNPQWTIENAFVPQKRENELSHIIEHPDGRVEIKFEDERPQFPVVKENMNKKE 61
           L WD LT+NP W ++    P  R +  + I E PDG VE++F +    +P V       E
Sbjct: 256 LKWDELTKNPIWKLQGETAPVTRSSTEASITEFPDGNVEVQF-NSGLSYPRV------SE 315

Query: 62  FMSSRPSTSGIRPE--FIQSIGRTNSLRVMSVKLEHGVPNLQYE-EDRPLSPTQTDMETD 121
            MSSRPSTS I+ E  + +++ R+ S+R  SV   H +P++ YE ED  LSPTQ+DME  
Sbjct: 316 IMSSRPSTSSIKSEASYRETLRRSESIRA-SVDFSHTIPDVHYEKEDGSLSPTQSDMERR 375

Query: 122 S-VFKSQLNVIISDNEFKIDKEALQKEFMARENREERKHFFN--DYSEAQRKI 169
           S    +Q+NVI +D E   +  ++  +   +   E RK F    D+ E   K+
Sbjct: 376 SEPVYNQINVISNDKERFREHYSVYIDQWIKAPAETRKPFLTMPDFVEGMLKV 420

[Close]

BLAST of Lag0011310 vs. NCBI nr
Match: TYJ97599.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-13
Identity = 63/173 (36.42%), Postives = 94/173 (54.34%), Query Frame = 0


Query: 2   LSWDNLTRNPQWTIENAFVPQKRENELSHIIEHPDGRVEIKFEDERPQFPVVKENMNKKE 61
           L WD LT+NP W ++    P  R +  + I E PDG VE++F +    +P +       E
Sbjct: 256 LKWDELTKNPIWKLQGETAPVTRSSTEASITEFPDGNVEVQF-NSGLSYPRI------SE 315

Query: 62  FMSSRPSTSGIRPE--FIQSIGRTNSLRVMSVKLEHGVPNLQYE-EDRPLSPTQTDMETD 121
            MSSRPSTS I+ E  + +++ R+ S+R  SV   H +P++ YE ED  LSPTQ+DME  
Sbjct: 316 IMSSRPSTSSIKSEASYRETLRRSESIRA-SVDFSHTIPDVHYEKEDGSLSPTQSDMERR 375

Query: 122 S-VFKSQLNVIISDNEFKIDKEALQKEFMARENREERKHFFN--DYSEAQRKI 169
           S    +Q+NVI +D E   +  ++  +   +   E RK F    D+ E   K+
Sbjct: 376 SEPVYNQINVISNDKERFREHYSVYIDQWIKAPAETRKPFLTMPDFVEGMLKV 420

[Close]

BLAST of Lag0011310 vs. NCBI nr
Match: TYJ98087.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-12
Identity = 63/173 (36.42%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 2   LSWDNLTRNPQWTIENAFVPQKRENELSHIIEHPDGRVEIKFEDERPQFPVVKENMNKKE 61
           L WD LT+NP W ++    P KR +  + I E PDG VE++F +    +P +       E
Sbjct: 255 LKWDELTKNPIWKLQGEIAPIKRSSTEASITEFPDGNVEVQF-NTGISYPRI------SE 314

Query: 62  FMSSRPSTSGIRPE--FIQSIGRTNSLRVMSVKLEHGVPNLQYE-EDRPLSPTQTDMETD 121
            MSSR STS I+ E  +  ++ R+ S+R  SV   H +P++ YE EDR LSPTQ+DME  
Sbjct: 315 IMSSRQSTSSIKTETSYRDTLRRSESIRA-SVDFSHTIPDVHYEKEDRSLSPTQSDMERR 374

Query: 122 S-VFKSQLNVIISDNEFKIDKEALQKEFMARENREERKHFFN--DYSEAQRKI 169
           S    +Q+NVI  + E   +  ++  +   +   E RK F    D+ E   K+
Sbjct: 375 SEPVYNQINVISDEKERFREHYSVYIDRWIKAPAETRKPFLTMPDFIEGMLKL 419

The following BLAST results are available for this feature:

BLAST of Lag0011310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057417.1	3.8e-13	36.99	Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprote...	[more]
KAA0056776.1	3.8e-13	36.42	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0059217.1	4.9e-13	36.99	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
TYJ97599.1	6.5e-13	36.42	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
TYJ98087.1	1.4e-12	36.42	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0011310 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011310.1	Lag0011310.1	mRNA