Lag0011307 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011307
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr1: 20682020 .. 20683456 (-)
RNA-Seq Expression	Lag0011307
Synteny	Lag0011307

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGATCGTTTGGTAAAGAATGGACTTCTAAGCAAGTTAGAAGAGGATTCACTACCACCTTGTGAATCTTGTCTCGAGGGAAAAATGACCAAGAGACCCTTTACTGGAAAAGGTTACAGAGCCAAAGAACCCTTAGAGTTAATACATTCGGATCTATGTGGTCCAATGAATGTAAAAGCTCGAGGAGGGTACGTATATTTCATCTCATTTATAGATGATTATTCAAGATATGGTTACTTGTACCTAATGGGACATAAGTCTGAAGCCCTTGAAAAGTTTAAGGAGATTTATTTTTAAGCATGTTTAAACCAATTTTCCAGCAGCTTTAAAAGGGTTTTAAAGTTTAATTGAGTTTTCGTAACGGTATTTTAATGTTAATTAATATACGGCGTAAGGTCCAATCGATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCACTTCGGTCTTGGCCCGTCCTACATGTCAGTCTCGCCTCTGGGGTCCATCTTTCAACCCTATTTCTGTCCACTGTCCTCGTCAACTTCTTGTACATCGGAGTGGTCCAAAATTGCCTGTAACATTAAGCCCCCACTCTTTAATTGGGATTTAGGGTGACTTATTGCTATAGGTTGAGCTCCTTAAGCCCGATTTAAGAGTAATGATCTTTGCCTTGTGCTGACTCATGTACAACTTTATTGCCATTCTGCAAAAAAAGGATAGAAATAGACAAAGTAGATGCTCCCTGAATAGGGGTTAGGTGAAATGGAAATGAGAAATGTGAGGGGTTACAAAAGTGGTGTTGGTCGGCCTCGACCTCAGGAAGATCCGAGCATAACAGCATCCTAATTTTGCTTAAGGGGCATAGCCCCCGAACCCCCATCGGACGCTTCGCCCCTGGACCCCGACTCGCTGACCTGTCAGCGAGACCCCCGTACTTGGTCATTCGAAGTGCTCCATTCCAGGTTCAAGTCATATCCACACATATGATTTGAAGACTTTGAGCTCCTGCATTGAGAAGTTAATTTTTGCAAGAGCGAAGTTAGGGAAGAGGCTAGGGTCGGCCTCAGCCTCAAGCCCCAGCCCAGGCTCGCCTGATGTGAAGATGCTCATGGCAGATGAGGTGAGGTAGACTCATTGGTCCAGGCTCACATGGTCTCAAGTCTGGATGAGGCGAGGTAGACTCGGTAGTCCAGGCTCGCGTAATGTGAAAATGCTATAGCCAGATGAGGGGAGGTAGACTCGTTGGTCCAAGCTCACGTAATCTCAATCTGGATGAGGCGAGGTAGACTCAGTAGTCCAGGCTCGAGTAATGTGAAAATGCTCAAACCAGATGAGGTGAGGAAGACTCGTTGGTCCAGGCTCACGTAATCTCAATCTGGATGAGGCGAGGTAGGCTCAGCCGTCCAGGCTTGCATGATGTGACGATGCTCAAGCCAGATGAAATGAGGTAG

mRNA sequence

ATGATCGATCGTTTGGTAAAGAATGGACTTCTAAGCAAGTTAGAAGAGGATTCACTACCACCTTGTGAATCTTGTCTCGAGGGAAAAATGACCAAGAGACCCTTTACTGGAAAAGGTTACAGAGCCAAAGAACCCTTAGAGTTAATACATTCGGATCTATGTGGTCCAATGAATGTAAAAGCTCGAGGAGGCCCCCGAACCCCCATCGGACGCTTCGCCCCTGGACCCCGACTCGCTGACCTGTCAGCGAGACCCCCGTACTTGGTCATTCGAAGTGCTCCATTCCAGTTAGGGAAGAGGCTAGGGTCGGCCTCAGCCTCAAGCCCCAGCCCAGGCTCGCCTGATGTGAAGATGCTCATGGCAGATGAGATGAGGGGAGGTAGACTCGTTGGTCCAAGCTCACGTAATCTCAATCTGGATGAGGCGAGGCTCAGCCGTCCAGGCTTGCATGATGTGACGATGCTCAAGCCAGATGAAATGAGGTAG

Coding sequence (CDS)

ATGATCGATCGTTTGGTAAAGAATGGACTTCTAAGCAAGTTAGAAGAGGATTCACTACCACCTTGTGAATCTTGTCTCGAGGGAAAAATGACCAAGAGACCCTTTACTGGAAAAGGTTACAGAGCCAAAGAACCCTTAGAGTTAATACATTCGGATCTATGTGGTCCAATGAATGTAAAAGCTCGAGGAGGCCCCCGAACCCCCATCGGACGCTTCGCCCCTGGACCCCGACTCGCTGACCTGTCAGCGAGACCCCCGTACTTGGTCATTCGAAGTGCTCCATTCCAGTTAGGGAAGAGGCTAGGGTCGGCCTCAGCCTCAAGCCCCAGCCCAGGCTCGCCTGATGTGAAGATGCTCATGGCAGATGAGATGAGGGGAGGTAGACTCGTTGGTCCAAGCTCACGTAATCTCAATCTGGATGAGGCGAGGCTCAGCCGTCCAGGCTTGCATGATGTGACGATGCTCAAGCCAGATGAAATGAGGTAG

Protein sequence

MIDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGPRTPIGRFAPGPRLADLSARPPYLVIRSAPFQLGKRLGSASASSPSPGSPDVKMLMADEMRGGRLVGPSSRNLNLDEARLSRPGLHDVTMLKPDEMR

Homology

[Close]

BLAST of Lag0011307 vs. NCBI nr
Match: KAA0066736.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27884.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 7.3e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 2   IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA 61
           I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA
Sbjct: 138 IGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA 197

Query: 62  RGG 65
           RGG
Sbjct: 198 RGG 200

[Close]

BLAST of Lag0011307 vs. NCBI nr
Match: KAA0060399.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK22139.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-26
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 2   IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA 61
           I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPL+LIHSDLCGPMNVKA
Sbjct: 151 IGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKA 210

Query: 62  RGG 65
           RGG
Sbjct: 211 RGG 213

[Close]

BLAST of Lag0011307 vs. NCBI nr
Match: TYK02509.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-26
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 2   IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA 61
           I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA
Sbjct: 208 IGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA 267

Query: 62  RG 64
           RG
Sbjct: 268 RG 269

[Close]

BLAST of Lag0011307 vs. NCBI nr
Match: KAA0067493.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-26
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 2   IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA 61
           I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA
Sbjct: 209 IRRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA 268

Query: 62  RG 64
           RG
Sbjct: 269 RG 270

[Close]

BLAST of Lag0011307 vs. NCBI nr
Match: KAA0062886.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-26
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 4   RLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG 63
           RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGP+NVKARG
Sbjct: 228 RLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPINVKARG 287

Query: 64  G 65
           G
Sbjct: 288 G 288

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BLAST of Lag0011307 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.3e-06
Identity = 22/60 (36.67%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 5   LVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG 64
           L K  L+S  +  ++ PC+ CL GK  +  F     R    L+L++SD+CGPM +++ GG
Sbjct: 440 LAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGG 499

[Close]

BLAST of Lag0011307 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.0e-04
Identity = 22/58 (37.93%), Postives = 32/58 (55.17%), Query Frame = 0


Query: 2   IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNV 60
           ++ LVK G L   +  SL  CE C+ GK  +  F+   +  K PL+ +HSDL G  +V
Sbjct: 84  MELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Lag0011307 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066736.1	7.3e-27	95.24	gag/pol protein [Cucumis melo var. makuwa] >TYK27884.1 gag/pol protein [Cucumis ...	[more]
KAA0060399.1	2.1e-26	93.65	gag/pol protein [Cucumis melo var. makuwa] >TYK22139.1 gag/pol protein [Cucumis ...	[more]
TYK02509.1	3.6e-26	95.16	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0067493.1	4.7e-26	95.16	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062886.1	4.7e-26	95.08	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0011307 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.3e-06	36.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P93293	4.0e-04	37.93	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011307.1	Lag0011307.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding